Wall clock time and date at job start Tue Mar 31 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.92491 * 2 1 4 4 C 1.38109 * 120.06576 * 180.02562 * 3 2 1 5 5 C 1.38878 * 119.92977 * 0.23040 * 4 3 2 6 6 N 1.39927 * 120.06630 * 179.72286 * 5 4 3 7 7 C 1.34778 * 120.00426 * 33.29281 * 6 5 4 8 8 O 1.21296 * 119.99695 * 5.27234 * 7 6 5 9 9 C 1.50692 * 120.00463 * 185.27084 * 7 6 5 10 10 O 1.45195 * 109.47502 * 179.97438 * 9 7 6 11 11 C 1.34226 * 117.00425 * 179.97438 * 10 9 7 12 12 O 1.20833 * 119.99987 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00218 * 180.02562 * 11 10 9 14 14 C 1.53003 * 109.46874 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47100 * 180.02562 * 14 13 11 16 16 H 1.08007 * 119.99451 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00221 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99960 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00203 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47558 * 89.99553 * 19 17 15 21 21 H 1.48500 * 109.47174 * 209.99864 * 19 17 15 22 22 H 1.48507 * 109.47079 * 329.99621 * 19 17 15 23 23 C 1.38867 * 119.85665 * 359.49527 * 5 4 3 24 24 C 1.38108 * 119.93280 * 0.50320 * 23 5 4 25 25 H 1.08997 * 109.47196 * 90.00330 * 1 2 3 26 26 H 1.09001 * 109.46970 * 210.00363 * 1 2 3 27 27 H 1.09004 * 109.47548 * 329.99737 * 1 2 3 28 28 H 1.07999 * 119.96687 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.03249 * 179.97438 * 4 3 2 30 30 H 0.96996 * 119.99827 * 213.28925 * 6 5 4 31 31 H 1.08996 * 109.47387 * 300.00010 * 9 7 6 32 32 H 1.09005 * 109.46988 * 59.99646 * 9 7 6 33 33 H 1.08990 * 109.47202 * 300.00385 * 13 11 10 34 34 H 1.09004 * 109.47119 * 60.00579 * 13 11 10 35 35 H 1.08998 * 109.47323 * 299.99936 * 14 13 11 36 36 H 1.09004 * 109.47252 * 60.00608 * 14 13 11 37 37 H 0.97001 * 120.00172 * 180.02562 * 18 17 15 38 38 H 1.08003 * 120.03350 * 180.23156 * 23 5 4 39 39 H 1.07996 * 119.96656 * 179.74852 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2738 0.0000 -0.0059 6 7 5.6731 0.0002 -0.0123 7 6 6.3499 0.9747 0.6270 8 8 5.7503 1.7966 1.2874 9 6 7.8516 1.0431 0.5216 10 8 8.3400 2.1725 1.2924 11 6 9.6669 2.3749 1.3031 12 8 10.3962 1.6331 0.6883 13 6 10.2471 3.5272 2.0819 14 6 11.7694 3.5318 1.9277 15 6 12.3497 4.6837 2.7070 16 1 11.6979 5.3461 3.2576 17 6 13.7126 4.8922 2.7172 18 7 14.5062 4.0853 2.0473 19 14 14.4320 6.3196 3.6838 20 1 14.7398 5.8757 5.0670 21 1 15.6783 6.7856 3.0245 22 1 13.4496 7.4324 3.7282 23 6 3.5780 -1.2017 -0.0001 24 6 2.1969 -1.1984 0.0004 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6551 2.1328 -0.0004 29 1 4.1162 2.1382 -0.0010 30 1 6.1560 -0.7011 -0.4769 31 1 8.2855 0.1222 0.9109 32 1 8.1372 1.1659 -0.5232 33 1 9.8409 4.4642 1.7012 34 1 9.9886 3.4205 3.1354 35 1 12.1759 2.5947 2.3082 36 1 12.0276 3.6387 0.8741 37 1 15.4650 4.2317 2.0547 38 1 4.1163 -2.1380 -0.0005 39 1 1.6553 -2.1327 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291364032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:49 Heat of formation + Delta-G solvation = -128.075313 kcal Electronic energy + Delta-G solvation = -21429.887754 eV Core-core repulsion = 17915.344936 eV Total energy + Delta-G solvation = -3514.542817 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.95818 -41.28427 -39.64717 -37.63148 -36.20413 -35.65732 -33.23275 -32.75894 -31.90638 -30.23225 -27.97639 -26.84925 -24.29530 -23.98072 -22.65319 -21.57903 -21.49868 -19.21328 -19.13356 -18.25801 -18.00727 -17.91952 -16.96223 -16.59533 -16.47747 -16.32053 -15.74761 -15.37022 -14.98404 -14.65138 -14.58545 -14.36623 -14.26533 -13.93838 -13.85723 -13.24756 -13.19138 -12.96853 -12.83688 -12.55958 -12.51912 -12.05318 -12.02946 -11.90689 -11.77728 -11.54779 -11.37753 -11.29587 -11.00043 -10.57474 -9.89863 -9.02704 -8.20301 -6.33527 0.20129 0.44144 1.13307 1.15169 1.32758 1.44023 1.45513 1.56841 2.19793 2.44071 2.81173 3.13609 3.37064 3.86303 3.92692 3.96915 4.01557 4.03259 4.10895 4.40384 4.43289 4.44197 4.47801 4.54652 4.83927 4.86582 4.88723 5.07311 5.13321 5.20724 5.32020 5.37739 5.46692 5.48189 5.55379 5.69360 5.80372 6.06100 6.13141 6.21662 6.70318 6.84363 6.90132 7.36455 8.92115 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.049359 B = 0.002155 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.138743 B =12991.113083 C =13449.124173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.106 4.106 3 C -0.114 4.114 4 C -0.141 4.141 5 C 0.121 3.879 6 N -0.653 5.653 7 C 0.520 3.480 8 O -0.540 6.540 9 C 0.041 3.959 10 O -0.346 6.346 11 C 0.472 3.528 12 O -0.533 6.533 13 C -0.096 4.096 14 C 0.039 3.961 15 C -0.546 4.546 16 H 0.075 0.925 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.973 3.027 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.258 1.258 23 C -0.136 4.136 24 C -0.104 4.104 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.431 0.569 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.114 0.886 35 H -0.006 1.006 36 H -0.006 1.006 37 H 0.264 0.736 38 H 0.153 0.847 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.659 -12.470 -6.303 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.132 4.132 4 C -0.162 4.162 5 C 0.028 3.972 6 N -0.302 5.302 7 C 0.307 3.693 8 O -0.415 6.415 9 C -0.035 4.035 10 O -0.263 6.263 11 C 0.317 3.683 12 O -0.422 6.422 13 C -0.133 4.133 14 C 0.002 3.998 15 C -0.584 4.584 16 H 0.093 0.907 17 C -0.200 4.200 18 N -0.573 5.573 19 Si 0.797 3.203 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.182 1.182 23 C -0.156 4.156 24 C -0.123 4.123 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.151 0.849 29 H 0.129 0.871 30 H 0.271 0.729 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.013 0.987 36 H 0.013 0.987 37 H 0.073 0.927 38 H 0.171 0.829 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -27.649 -12.133 -6.079 30.799 hybrid contribution 1.273 0.241 -0.039 1.296 sum -26.375 -11.892 -6.119 29.572 Atomic orbital electron populations 1.20820 0.89204 1.03614 1.03154 1.20298 0.97717 0.92795 0.99899 1.21131 0.92989 0.99025 1.00086 1.21180 0.95252 0.97404 1.02326 1.17900 0.82166 0.94782 1.02397 1.43132 1.04802 1.28884 1.53381 1.20388 0.89231 0.81133 0.78498 1.90765 1.70503 1.40455 1.39807 1.22831 0.90546 0.90811 0.99351 1.86589 1.25074 1.48053 1.66549 1.24489 0.79292 0.85893 0.78647 1.90636 1.61055 1.47482 1.42995 1.21543 0.96886 0.94099 1.00765 1.18810 0.88882 0.96144 0.95959 1.21641 0.92807 1.13036 1.30873 0.90707 1.26057 0.97831 0.99545 0.96610 1.70143 1.04398 1.39659 1.43119 0.85329 0.77781 0.78891 0.78305 1.19749 1.21030 1.18238 1.21191 0.95027 0.96497 1.02926 1.21221 0.93256 0.98675 0.99104 0.90181 0.90236 0.91321 0.84896 0.87088 0.72897 0.85818 0.85900 0.86802 0.86777 0.98744 0.98739 0.92712 0.82913 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 71.24 0.71 -0.27 16 2 C -0.11 -1.55 5.88 -19.84 -0.12 -1.67 16 3 C -0.11 -2.12 9.69 22.25 0.22 -1.91 16 4 C -0.14 -3.26 8.66 22.39 0.19 -3.06 16 5 C 0.12 2.36 6.28 38.15 0.24 2.60 16 6 N -0.65 -11.18 5.34 -303.50 -1.62 -12.80 16 7 C 0.52 12.74 7.65 87.65 0.67 13.41 16 8 O -0.54 -18.11 14.19 15.72 0.22 -17.89 16 9 C 0.04 0.99 5.95 71.23 0.42 1.41 16 10 O -0.35 -11.54 9.75 -45.03 -0.44 -11.98 16 11 C 0.47 18.23 7.96 71.24 0.57 18.80 16 12 O -0.53 -23.29 15.73 21.94 0.35 -22.94 16 13 C -0.10 -3.90 5.75 29.85 0.17 -3.73 16 14 C 0.04 2.11 4.26 29.85 0.13 2.24 16 15 C -0.55 -30.58 9.11 25.60 0.23 -30.35 16 16 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 17 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 18 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 19 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 23 C -0.14 -1.91 9.96 22.39 0.22 -1.69 16 24 C -0.10 -1.32 9.69 22.25 0.22 -1.10 16 25 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 27 H 0.07 0.58 8.08 -2.38 -0.02 0.57 16 28 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 29 H 0.11 3.05 6.41 -2.91 -0.02 3.03 16 30 H 0.43 3.84 8.82 -92.71 -0.82 3.02 16 31 H 0.12 2.43 8.13 -2.39 -0.02 2.42 16 32 H 0.12 2.47 8.13 -2.38 -0.02 2.45 16 33 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 34 H 0.11 4.23 8.14 -2.38 -0.02 4.21 16 35 H -0.01 -0.35 8.10 -2.39 -0.02 -0.37 16 36 H -0.01 -0.35 8.10 -2.39 -0.02 -0.36 16 37 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 39 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -77.95 343.98 5.41 -72.54 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.25 Total: 9.44 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 4.34 Total: -4.99 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -1.34 Total: -70.10 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: 0.13 Total: -52.81 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -77.95 5.41 -72.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291364032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.533 kcal (2) G-P(sol) polarization free energy of solvation -77.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds