Wall clock time and date at job start Tue Mar 31 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34753 * 116.99769 * 2 1 4 4 O 1.21502 * 119.99712 * 0.02562 * 3 2 1 5 5 C 1.47459 * 119.99726 * 179.97438 * 3 2 1 6 6 C 1.39820 * 120.08260 * 353.51928 * 5 3 2 7 7 C 1.37628 * 119.92472 * 180.23150 * 6 5 3 8 8 C 1.39169 * 120.07613 * 359.49315 * 7 6 5 9 9 N 1.39407 * 119.92231 * 180.25455 * 8 7 6 10 10 C 1.34773 * 119.99906 * 35.85814 * 9 8 7 11 11 O 1.21271 * 120.00330 * 355.46874 * 10 9 8 12 12 C 1.50703 * 119.99916 * 175.47259 * 10 9 8 13 13 C 1.53001 * 109.46922 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46922 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00111 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99827 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00238 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47567 * 89.99611 * 18 16 14 20 20 H 1.48498 * 109.47288 * 209.99685 * 18 16 14 21 21 H 1.48505 * 109.47194 * 329.99592 * 18 16 14 22 22 C 1.39130 * 120.15753 * 0.51115 * 8 7 6 23 23 C 1.37669 * 120.07790 * 359.74290 * 22 8 7 24 24 C 1.50701 * 120.04227 * 179.97438 * 23 22 8 25 25 H 1.08996 * 109.47353 * 59.99832 * 1 2 3 26 26 H 1.09000 * 109.46696 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47108 * 299.99487 * 1 2 3 28 28 H 1.08006 * 120.04117 * 359.95963 * 6 5 3 29 29 H 1.08002 * 119.96212 * 179.75314 * 7 6 5 30 30 H 0.96999 * 120.00072 * 215.85427 * 9 8 7 31 31 H 1.08999 * 109.47339 * 299.99693 * 12 10 9 32 32 H 1.08999 * 109.47238 * 59.99982 * 12 10 9 33 33 H 1.09001 * 109.47202 * 299.99567 * 13 12 10 34 34 H 1.08995 * 109.47576 * 60.00182 * 13 12 10 35 35 H 0.96998 * 120.00147 * 180.02562 * 17 16 14 36 36 H 1.08000 * 119.96204 * 179.76398 * 22 8 7 37 37 H 1.09008 * 109.46862 * 263.10626 * 24 23 22 38 38 H 1.09005 * 109.46748 * 23.09332 * 24 23 22 39 39 H 1.08996 * 109.47609 * 143.10152 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2196 0.0005 5 6 3.5364 1.2778 0.0006 6 6 4.2991 0.1141 0.1377 7 6 5.6732 0.1904 0.1426 8 6 6.3038 1.4229 0.0007 9 7 7.6960 1.4958 0.0007 10 6 8.4223 0.5127 -0.5669 11 8 7.8698 -0.4742 -1.0044 12 6 9.9212 0.6396 -0.6578 13 6 10.4978 -0.6030 -1.3393 14 6 11.9968 -0.4763 -1.4296 15 1 12.4889 0.4027 -1.0404 16 6 12.7399 -1.4822 -2.0102 17 7 12.1406 -2.5524 -2.4847 18 14 14.5980 -1.3255 -2.1216 19 1 15.2178 -1.9091 -0.9049 20 1 15.0849 -2.0516 -3.3220 21 1 14.9684 0.1087 -2.2265 22 6 5.5481 2.5830 -0.1359 23 6 4.1731 2.5148 -0.1364 24 6 3.3553 3.7720 -0.2838 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 3.8105 -0.8433 0.2440 29 1 6.2630 -0.7077 0.2524 30 1 8.1419 2.2542 0.4093 31 1 10.1763 1.5250 -1.2401 32 1 10.3396 0.7310 0.3445 33 1 10.2429 -1.4882 -0.7566 34 1 10.0796 -0.6948 -2.3416 35 1 12.6634 -3.2602 -2.8928 36 1 6.0407 3.5383 -0.2420 37 1 3.0485 4.1234 0.7014 38 1 3.9547 4.5399 -0.7730 39 1 2.4716 3.5621 -0.8863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291825499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:55 Heat of formation + Delta-G solvation = -104.053682 kcal Electronic energy + Delta-G solvation = -22016.824925 eV Core-core repulsion = 18503.323764 eV Total energy + Delta-G solvation = -3513.501161 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93591 -40.14979 -38.42272 -36.63986 -34.83091 -33.59130 -32.60370 -31.35657 -30.21522 -28.10754 -26.98899 -25.96589 -23.70429 -22.48715 -21.83028 -20.71530 -19.70370 -18.05137 -17.51534 -17.08572 -16.83826 -16.56070 -15.85067 -15.47970 -14.81476 -14.65201 -14.49232 -14.10592 -13.96119 -13.50076 -13.23307 -13.16587 -12.83515 -12.73566 -12.31043 -12.26359 -12.23391 -12.06628 -11.36436 -11.24554 -10.99822 -10.98427 -10.65911 -10.34288 -10.27079 -10.07021 -9.77337 -9.34575 -9.16001 -8.89427 -8.39264 -8.23595 -6.02425 -4.07431 0.56294 1.26924 2.34267 2.53639 2.95680 3.17536 3.29671 3.36379 3.38601 3.68195 4.42185 4.58130 4.64359 4.72279 4.85854 4.93164 5.05809 5.16479 5.23168 5.28568 5.32872 5.47270 5.57789 5.60496 5.75244 5.94913 5.99901 6.05432 6.05707 6.24140 6.25577 6.39131 6.43055 6.73691 6.90177 7.50364 7.59820 7.66188 7.74860 7.98151 8.27261 8.44762 9.00286 9.56730 11.08453 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.036484 B = 0.002613 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.271846 B =10713.690271 C =11326.835765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.356 6.356 3 C 0.513 3.487 4 O -0.509 6.509 5 C -0.165 4.165 6 C -0.035 4.035 7 C -0.147 4.147 8 C 0.204 3.796 9 N -0.686 5.686 10 C 0.509 3.491 11 O -0.507 6.507 12 C -0.129 4.129 13 C 0.036 3.964 14 C -0.529 4.529 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.889 5.889 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.171 4.171 23 C 0.003 3.997 24 C -0.120 4.120 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.139 0.861 29 H 0.150 0.850 30 H 0.412 0.588 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.135 0.865 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.539 10.347 7.336 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.360 3.640 4 O -0.400 6.400 5 C -0.167 4.167 6 C -0.054 4.054 7 C -0.167 4.167 8 C 0.107 3.893 9 N -0.331 5.331 10 C 0.300 3.700 11 O -0.379 6.379 12 C -0.168 4.168 13 C -0.001 4.001 14 C -0.568 4.568 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.527 5.527 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.192 4.192 23 C 0.002 3.998 24 C -0.177 4.177 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.157 0.843 29 H 0.167 0.833 30 H 0.248 0.752 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.152 0.848 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.023 9.706 6.883 23.292 hybrid contribution 1.091 0.415 0.087 1.171 sum -18.932 10.122 6.970 22.571 Atomic orbital electron populations 1.23253 0.76189 1.03697 1.02476 1.86579 1.23376 1.32878 1.84430 1.21165 0.89128 0.81234 0.72503 1.90776 1.67105 1.35478 1.46619 1.18823 0.88733 0.94677 1.14470 1.21321 0.93283 0.97604 0.93188 1.21362 0.94333 0.98269 1.02716 1.18143 0.83743 0.94108 0.93315 1.43984 1.03925 1.26490 1.58734 1.21947 0.91416 0.81380 0.75301 1.90685 1.72878 1.29301 1.45062 1.21937 0.86804 1.04710 1.03394 1.18930 0.94731 0.90274 0.96210 1.21182 0.91799 1.04378 1.39411 0.92515 1.25025 0.98646 0.95322 0.95360 1.69992 1.35578 1.07918 1.39231 0.86572 0.85535 0.78129 0.77600 1.20628 1.21186 1.19871 1.20732 0.92705 0.97942 1.07806 1.19703 0.93079 0.94030 0.93001 1.21093 1.00015 0.93263 1.03287 0.91904 0.88062 0.91922 0.84279 0.83279 0.75171 0.89642 0.89640 0.95666 0.95671 0.92856 0.84759 0.90510 0.91989 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.36 -3.92 9.83 -40.64 -0.40 -4.32 16 3 C 0.51 6.39 7.82 34.49 0.27 6.66 16 4 O -0.51 -6.85 13.13 -19.27 -0.25 -7.10 16 5 C -0.16 -2.08 5.87 -104.97 -0.62 -2.70 16 6 C -0.04 -0.45 9.60 -39.21 -0.38 -0.82 16 7 C -0.15 -2.11 8.66 -39.46 -0.34 -2.45 16 8 C 0.20 2.74 6.28 -83.74 -0.53 2.21 16 9 N -0.69 -9.00 5.31 -9.86 -0.05 -9.05 16 10 C 0.51 8.99 7.66 -10.99 -0.08 8.90 16 11 O -0.51 -10.93 13.44 5.57 0.07 -10.86 16 12 C -0.13 -2.39 5.64 -27.88 -0.16 -2.55 16 13 C 0.04 0.92 4.26 -27.88 -0.12 0.81 16 14 C -0.53 -14.51 9.11 -34.44 -0.31 -14.83 16 15 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.17 -1.95 9.57 -39.46 -0.38 -2.33 16 23 C 0.00 0.03 5.91 -104.25 -0.62 -0.58 16 24 C -0.12 -1.22 8.71 36.01 0.31 -0.91 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.14 1.54 7.62 -52.48 -0.40 1.14 16 29 H 0.15 2.40 6.27 -52.49 -0.33 2.07 16 30 H 0.41 3.86 8.82 -40.82 -0.36 3.50 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.13 1.18 8.05 -52.49 -0.42 0.76 16 37 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.06 0.51 8.03 -51.93 -0.42 0.10 16 39 H 0.09 1.04 5.88 -51.93 -0.31 0.74 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -33.78 336.75 -6.97 -40.74 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.15 Total: 1.08 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.98 Total: -5.67 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.68 Total: -35.13 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.58 Total: -22.28 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.78 -6.97 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291825499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.311 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds