Wall clock time and date at job start Tue Mar 31 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34753 * 116.99769 * 2 1 4 4 O 1.21502 * 119.99712 * 0.02562 * 3 2 1 5 5 C 1.47459 * 119.99726 * 179.97438 * 3 2 1 6 6 C 1.39820 * 120.08260 * 353.51928 * 5 3 2 7 7 C 1.37628 * 119.92472 * 180.23150 * 6 5 3 8 8 C 1.39169 * 120.07613 * 359.49315 * 7 6 5 9 9 N 1.39407 * 119.92231 * 180.25455 * 8 7 6 10 10 C 1.34773 * 119.99906 * 35.85814 * 9 8 7 11 11 O 1.21271 * 120.00330 * 355.46874 * 10 9 8 12 12 C 1.50703 * 119.99916 * 175.47259 * 10 9 8 13 13 C 1.53001 * 109.46922 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46922 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00111 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99827 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00238 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47567 * 89.99611 * 18 16 14 20 20 H 1.48498 * 109.47288 * 209.99685 * 18 16 14 21 21 H 1.48505 * 109.47194 * 329.99592 * 18 16 14 22 22 C 1.39130 * 120.15753 * 0.51115 * 8 7 6 23 23 C 1.37669 * 120.07790 * 359.74290 * 22 8 7 24 24 C 1.50701 * 120.04227 * 179.97438 * 23 22 8 25 25 H 1.08996 * 109.47353 * 59.99832 * 1 2 3 26 26 H 1.09000 * 109.46696 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47108 * 299.99487 * 1 2 3 28 28 H 1.08006 * 120.04117 * 359.95963 * 6 5 3 29 29 H 1.08002 * 119.96212 * 179.75314 * 7 6 5 30 30 H 0.96999 * 120.00072 * 215.85427 * 9 8 7 31 31 H 1.08999 * 109.47339 * 299.99693 * 12 10 9 32 32 H 1.08999 * 109.47238 * 59.99982 * 12 10 9 33 33 H 1.09001 * 109.47202 * 299.99567 * 13 12 10 34 34 H 1.08995 * 109.47576 * 60.00182 * 13 12 10 35 35 H 0.96998 * 120.00147 * 180.02562 * 17 16 14 36 36 H 1.08000 * 119.96204 * 179.76398 * 22 8 7 37 37 H 1.09008 * 109.46862 * 263.10626 * 24 23 22 38 38 H 1.09005 * 109.46748 * 23.09332 * 24 23 22 39 39 H 1.08996 * 109.47609 * 143.10152 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2196 0.0005 5 6 3.5364 1.2778 0.0006 6 6 4.2991 0.1141 0.1377 7 6 5.6732 0.1904 0.1426 8 6 6.3038 1.4229 0.0007 9 7 7.6960 1.4958 0.0007 10 6 8.4223 0.5127 -0.5669 11 8 7.8698 -0.4742 -1.0044 12 6 9.9212 0.6396 -0.6578 13 6 10.4978 -0.6030 -1.3393 14 6 11.9968 -0.4763 -1.4296 15 1 12.4889 0.4027 -1.0404 16 6 12.7399 -1.4822 -2.0102 17 7 12.1406 -2.5524 -2.4847 18 14 14.5980 -1.3255 -2.1216 19 1 15.2178 -1.9091 -0.9049 20 1 15.0849 -2.0516 -3.3220 21 1 14.9684 0.1087 -2.2265 22 6 5.5481 2.5830 -0.1359 23 6 4.1731 2.5148 -0.1364 24 6 3.3553 3.7720 -0.2838 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 3.8105 -0.8433 0.2440 29 1 6.2630 -0.7077 0.2524 30 1 8.1419 2.2542 0.4093 31 1 10.1763 1.5250 -1.2401 32 1 10.3396 0.7310 0.3445 33 1 10.2429 -1.4882 -0.7566 34 1 10.0796 -0.6948 -2.3416 35 1 12.6634 -3.2602 -2.8928 36 1 6.0407 3.5383 -0.2420 37 1 3.0485 4.1234 0.7014 38 1 3.9547 4.5399 -0.7730 39 1 2.4716 3.5621 -0.8863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291825499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:55 Heat of formation + Delta-G solvation = -125.297035 kcal Electronic energy + Delta-G solvation = -22017.746106 eV Core-core repulsion = 18503.323764 eV Total energy + Delta-G solvation = -3514.422342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.95253 -41.29472 -39.54509 -37.57057 -36.06008 -35.56457 -33.61037 -33.06952 -31.42621 -28.92919 -27.94389 -27.63362 -24.99300 -23.73746 -23.03425 -21.98542 -20.98724 -18.99971 -18.92763 -18.35013 -18.03801 -17.46872 -17.42590 -16.74857 -16.46297 -15.91252 -15.63017 -15.23861 -14.96219 -14.69036 -14.39379 -14.24047 -14.12970 -13.92002 -13.73441 -13.29179 -13.23503 -13.06671 -12.94805 -12.81348 -12.47628 -12.31393 -11.91578 -11.79442 -11.64764 -11.44412 -11.30933 -11.25076 -10.75436 -10.55626 -9.86710 -9.32425 -8.17607 -6.31133 -0.45130 0.29451 1.28245 1.43691 1.45722 1.56515 1.67103 1.71757 2.01432 2.44193 2.67985 3.16152 3.67480 3.72121 3.78892 3.90933 4.15891 4.29407 4.30476 4.34630 4.38480 4.51778 4.54936 4.67967 4.74094 4.82227 4.85613 4.98509 5.07020 5.14362 5.21621 5.28620 5.38139 5.51416 5.52738 5.63522 5.84121 5.87087 6.17528 6.39659 6.67766 6.87412 7.14376 7.39300 8.94923 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.036484 B = 0.002613 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.271846 B =10713.690271 C =11326.835765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.512 3.488 4 O -0.521 6.521 5 C -0.172 4.172 6 C -0.036 4.036 7 C -0.166 4.166 8 C 0.186 3.814 9 N -0.661 5.661 10 C 0.514 3.486 11 O -0.557 6.557 12 C -0.116 4.116 13 C 0.040 3.960 14 C -0.542 4.542 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.972 3.028 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.255 1.255 22 C -0.155 4.155 23 C -0.001 4.001 24 C -0.115 4.115 25 H 0.064 0.936 26 H 0.129 0.871 27 H 0.066 0.934 28 H 0.148 0.852 29 H 0.124 0.876 30 H 0.433 0.567 31 H 0.112 0.888 32 H 0.113 0.887 33 H -0.015 1.015 34 H -0.016 1.016 35 H 0.262 0.738 36 H 0.169 0.831 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.194 13.080 8.141 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.360 3.640 4 O -0.413 6.413 5 C -0.174 4.174 6 C -0.054 4.054 7 C -0.186 4.186 8 C 0.090 3.910 9 N -0.308 5.308 10 C 0.304 3.696 11 O -0.434 6.434 12 C -0.156 4.156 13 C 0.002 3.998 14 C -0.579 4.579 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.214 1.214 21 H -0.178 1.178 22 C -0.175 4.175 23 C -0.002 4.002 24 C -0.171 4.171 25 H 0.083 0.917 26 H 0.147 0.853 27 H 0.085 0.915 28 H 0.165 0.835 29 H 0.142 0.858 30 H 0.274 0.726 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.004 0.996 34 H 0.002 0.998 35 H 0.071 0.929 36 H 0.186 0.814 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.696 12.500 7.729 24.575 hybrid contribution 0.820 -0.447 -0.144 0.945 sum -18.876 12.054 7.585 23.646 Atomic orbital electron populations 1.23569 0.74227 1.05720 1.02772 1.86568 1.25351 1.32156 1.84003 1.21145 0.89086 0.81498 0.72295 1.90768 1.67346 1.35879 1.47292 1.19038 0.89145 0.95056 1.14189 1.21359 0.92704 0.98357 0.93025 1.21268 0.94939 0.98119 1.04289 1.18264 0.83628 0.94554 0.94549 1.43522 1.03874 1.25858 1.57560 1.21675 0.91247 0.81496 0.75174 1.90686 1.73552 1.31532 1.47581 1.21682 0.87470 1.01943 1.04490 1.18718 0.94711 0.92280 0.94080 1.21717 0.92706 1.04871 1.38645 0.90385 1.26115 1.04455 0.94909 0.94983 1.70171 1.37851 1.09113 1.40645 0.85348 0.78562 0.78997 0.77509 1.19790 1.21430 1.17845 1.20983 0.92350 0.98360 1.05769 1.20026 0.93545 0.94420 0.92236 1.21080 0.99557 0.92891 1.03616 0.91747 0.85278 0.91495 0.83457 0.85817 0.72644 0.86964 0.86859 0.99627 0.99782 0.92909 0.81358 0.89887 0.89619 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.57 113.37 1.20 1.61 16 2 O -0.36 -7.77 9.83 -56.64 -0.56 -8.33 16 3 C 0.51 12.40 7.82 70.25 0.55 12.95 16 4 O -0.52 -13.49 13.13 19.83 0.26 -13.23 16 5 C -0.17 -4.22 5.87 -20.09 -0.12 -4.34 16 6 C -0.04 -0.92 9.60 22.51 0.22 -0.70 16 7 C -0.17 -4.88 8.66 22.35 0.19 -4.69 16 8 C 0.19 4.79 6.28 38.37 0.24 5.03 16 9 N -0.66 -16.26 5.31 -303.50 -1.61 -17.87 16 10 C 0.51 18.11 7.66 87.66 0.67 18.78 16 11 O -0.56 -25.23 13.44 -3.00 -0.04 -25.27 16 12 C -0.12 -4.22 5.64 29.85 0.17 -4.05 16 13 C 0.04 2.11 4.26 29.85 0.13 2.23 16 14 C -0.54 -29.67 9.11 25.60 0.23 -29.44 16 15 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 16 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 17 N -0.94 -58.47 13.29 21.45 0.28 -58.19 16 18 Si 0.97 43.34 29.54 68.60 2.03 45.36 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.25 -10.49 7.11 99.48 0.71 -9.79 16 22 C -0.15 -3.10 9.57 22.35 0.21 -2.88 16 23 C 0.00 -0.02 5.91 -19.62 -0.12 -0.14 16 24 C -0.12 -2.04 8.71 71.24 0.62 -1.42 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.13 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.15 3.38 7.62 -2.91 -0.02 3.35 16 29 H 0.12 4.29 6.27 -2.91 -0.02 4.27 16 30 H 0.43 6.72 8.82 -92.71 -0.82 5.90 16 31 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 32 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 33 H -0.01 -0.88 8.10 -2.39 -0.02 -0.90 16 34 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 35 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.17 2.19 8.05 -2.91 -0.02 2.17 16 37 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.09 1.10 8.03 -2.38 -0.02 1.08 16 39 H 0.08 1.64 5.88 -2.39 -0.01 1.63 16 Total: -1.00 -76.85 336.75 5.28 -71.57 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.26 Total: 12.96 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 4.66 Total: -7.00 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -1.33 Total: -76.06 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -0.34 Total: -46.83 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -76.85 5.28 -71.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291825499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.731 kcal (2) G-P(sol) polarization free energy of solvation -76.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds