Wall clock time and date at job start Tue Mar 31 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34705 * 116.99894 * 2 1 4 4 O 1.21479 * 120.00233 * 359.97438 * 3 2 1 5 5 C 1.47744 * 120.00270 * 179.97438 * 3 2 1 6 6 C 1.39555 * 120.11261 * 353.72673 * 5 3 2 7 7 C 1.38582 * 119.77158 * 180.02562 * 6 5 3 8 8 N 1.39958 * 119.99587 * 180.02562 * 7 6 5 9 9 C 1.34779 * 119.99408 * 328.87041 * 8 7 6 10 10 O 1.21286 * 120.00743 * 354.23887 * 9 8 7 11 11 C 1.50708 * 119.99454 * 174.23478 * 9 8 7 12 12 C 1.52995 * 109.46888 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47408 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99408 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00466 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99611 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00122 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47447 * 60.00058 * 17 15 13 19 19 H 1.48497 * 109.47270 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47227 * 300.00033 * 17 15 13 21 21 C 1.38996 * 120.00768 * 359.97239 * 7 6 5 22 22 C 1.38215 * 120.23348 * 0.28196 * 21 7 6 23 23 C 1.38014 * 120.23002 * 359.48396 * 22 21 7 24 24 C 1.50695 * 120.00681 * 180.25486 * 23 22 21 25 25 H 1.09000 * 109.47329 * 300.00096 * 1 2 3 26 26 H 1.08996 * 109.47403 * 60.00038 * 1 2 3 27 27 H 1.09003 * 109.47272 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.11071 * 0.04273 * 6 5 3 29 29 H 0.96993 * 119.99985 * 148.87541 * 8 7 6 30 30 H 1.08993 * 109.47037 * 300.00015 * 11 9 8 31 31 H 1.09001 * 109.46926 * 60.00149 * 11 9 8 32 32 H 1.09005 * 109.47401 * 300.00366 * 12 11 9 33 33 H 1.09001 * 109.47415 * 60.00203 * 12 11 9 34 34 H 0.97009 * 119.99615 * 180.02562 * 16 15 13 35 35 H 1.08002 * 119.88445 * 180.02562 * 21 7 6 36 36 H 1.08007 * 119.88773 * 179.71845 * 22 21 7 37 37 H 1.08997 * 109.47798 * 262.71663 * 24 23 22 38 38 H 1.09001 * 109.47364 * 22.72182 * 24 23 22 39 39 H 1.09008 * 109.46911 * 142.71620 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4019 2.2191 -0.0005 5 6 3.5390 1.2777 0.0006 6 6 4.3010 0.1161 0.1330 7 6 5.6844 0.1969 0.1332 8 7 6.4532 -0.9651 0.2652 9 6 5.9845 -2.0052 0.9829 10 8 4.9460 -1.8974 1.6000 11 6 6.7509 -3.3024 1.0184 12 6 6.0073 -4.3101 1.8972 13 6 6.7739 -5.6070 1.9333 14 1 7.6988 -5.7030 1.3840 15 6 6.2945 -6.6710 2.6676 16 7 5.1680 -6.5543 3.3360 17 14 7.2445 -8.2788 2.7117 18 1 8.5989 -8.0384 3.2709 19 1 6.5228 -9.2569 3.5647 20 1 7.3666 -8.8197 1.3341 21 6 6.3086 1.4318 0.0012 22 6 5.5541 2.5830 -0.1248 23 6 4.1758 2.5133 -0.1310 24 6 3.3582 3.7710 -0.2743 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.8142 -0.8426 0.2348 29 1 7.3233 -1.0219 -0.1597 30 1 6.8406 -3.6992 0.0073 31 1 7.7451 -3.1258 1.4290 32 1 5.9171 -3.9134 2.9085 33 1 5.0132 -4.4866 1.4862 34 1 4.8309 -7.3028 3.8529 35 1 7.3869 1.4925 0.0011 36 1 6.0449 3.5402 -0.2224 37 1 3.0415 4.1129 0.7110 38 1 3.9611 4.5441 -0.7507 39 1 2.4803 3.5658 -0.8872 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291891041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:58 Heat of formation + Delta-G solvation = -102.829899 kcal Electronic energy + Delta-G solvation = -22421.958854 eV Core-core repulsion = 18908.510760 eV Total energy + Delta-G solvation = -3513.448094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.88569 -39.99847 -38.41595 -36.53995 -34.84428 -33.55025 -31.82283 -31.59797 -30.76280 -27.91576 -26.87566 -25.41075 -24.20285 -22.46850 -21.67856 -20.57693 -19.79178 -18.29687 -17.21409 -16.98325 -16.43726 -15.97461 -15.83672 -15.53487 -15.31974 -14.59124 -14.48224 -14.04870 -13.96090 -13.58990 -13.31111 -13.08333 -12.74600 -12.30503 -12.20900 -12.19196 -12.09907 -11.91670 -11.67184 -11.22237 -10.94891 -10.83532 -10.66311 -10.25497 -10.14881 -10.02901 -9.75176 -9.33758 -9.16322 -9.07618 -8.36385 -8.01186 -5.99954 -4.04903 0.59510 1.22589 2.42162 2.65328 3.01336 3.23515 3.32075 3.37333 3.38906 3.71202 4.43813 4.52979 4.71077 4.83669 4.97799 5.04366 5.11884 5.19016 5.25751 5.35123 5.39272 5.46157 5.61054 5.67381 5.79592 5.91932 6.06808 6.10127 6.12037 6.20748 6.23183 6.38316 6.52426 6.78027 6.91722 7.58768 7.68824 7.69181 7.78589 8.01218 8.31127 8.51624 9.02723 9.58952 11.10841 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021077 B = 0.003349 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.169190 B = 8359.127455 C = 9529.077642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.348 6.348 3 C 0.512 3.488 4 O -0.506 6.506 5 C -0.114 4.114 6 C -0.065 4.065 7 C 0.141 3.859 8 N -0.685 5.685 9 C 0.508 3.492 10 O -0.509 6.509 11 C -0.128 4.128 12 C 0.036 3.964 13 C -0.530 4.530 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.113 4.113 22 C -0.114 4.114 23 C -0.045 4.045 24 C -0.117 4.117 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.104 0.896 28 H 0.155 0.845 29 H 0.411 0.589 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.262 0.738 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.035 18.572 -10.042 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.264 6.264 3 C 0.358 3.642 4 O -0.397 6.397 5 C -0.115 4.115 6 C -0.085 4.085 7 C 0.045 3.955 8 N -0.332 5.332 9 C 0.298 3.702 10 O -0.382 6.382 11 C -0.168 4.168 12 C -0.001 4.001 13 C -0.568 4.568 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.134 4.134 22 C -0.133 4.133 23 C -0.046 4.046 24 C -0.173 4.173 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.173 0.827 29 H 0.246 0.754 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.146 18.709 -9.448 21.069 hybrid contribution 0.827 -0.954 -0.062 1.264 sum -1.319 17.755 -9.509 20.184 Atomic orbital electron populations 1.23292 0.75951 1.04025 1.02333 1.86634 1.23545 1.32345 1.83852 1.21175 0.89066 0.81437 0.72513 1.90768 1.67020 1.35541 1.46352 1.18787 0.89022 0.94174 1.09562 1.21591 0.92437 0.99372 0.95141 1.17727 0.90823 0.86787 1.00114 1.43968 1.21808 1.13940 1.53438 1.21909 0.86388 0.85349 0.76595 1.90701 1.23882 1.82357 1.41259 1.21920 1.00105 0.91072 1.03729 1.18921 0.95449 0.91221 0.94529 1.21152 1.08083 0.97274 1.30301 0.92596 1.25019 0.95023 0.98856 0.95415 1.69986 1.20082 1.31728 1.30900 0.86639 0.79942 0.83276 0.77997 1.20235 1.21269 1.20225 1.21148 1.00367 0.90782 1.01124 1.20740 0.92326 0.98244 1.01978 1.19926 0.93981 0.93962 0.96746 1.21035 0.99868 0.93195 1.03233 0.91808 0.91955 0.87796 0.82728 0.75366 0.89659 0.89817 0.95701 0.95655 0.92832 0.85010 0.84824 0.90756 0.92209 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.35 -5.09 9.83 -40.51 -0.40 -5.49 16 3 C 0.51 7.62 7.83 34.62 0.27 7.89 16 4 O -0.51 -7.67 13.15 -19.25 -0.25 -7.93 16 5 C -0.11 -1.64 5.87 -105.00 -0.62 -2.25 16 6 C -0.06 -1.01 8.23 -38.96 -0.32 -1.33 16 7 C 0.14 1.92 6.31 -83.74 -0.53 1.39 16 8 N -0.69 -9.20 5.35 -9.89 -0.05 -9.26 16 9 C 0.51 9.20 7.57 -10.98 -0.08 9.12 16 10 O -0.51 -11.36 13.54 5.55 0.08 -11.28 16 11 C -0.13 -2.44 5.64 -27.88 -0.16 -2.59 16 12 C 0.04 0.94 4.26 -27.89 -0.12 0.82 16 13 C -0.53 -14.64 9.11 -34.44 -0.31 -14.96 16 14 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 17 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.11 -1.19 9.95 -39.31 -0.39 -1.59 16 22 C -0.11 -1.15 9.65 -39.67 -0.38 -1.53 16 23 C -0.04 -0.54 5.92 -104.19 -0.62 -1.16 16 24 C -0.12 -1.23 8.68 36.00 0.31 -0.91 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.16 2.79 5.83 -52.49 -0.31 2.48 16 29 H 0.41 3.91 8.81 -40.82 -0.36 3.55 16 30 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.13 0.95 8.05 -52.48 -0.42 0.52 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.47 8.03 -51.93 -0.42 0.06 16 39 H 0.09 1.04 5.92 -51.92 -0.31 0.74 16 LS Contribution 336.85 15.07 5.08 5.08 Total: -1.00 -34.43 336.85 -6.97 -41.40 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.15 Total: 1.47 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.98 Total: -4.05 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.68 Total: -35.48 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.58 Total: -24.70 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.43 -6.97 -41.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291891041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.431 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds