Wall clock time and date at job start Tue Mar 31 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34705 * 116.99894 * 2 1 4 4 O 1.21479 * 120.00233 * 359.97438 * 3 2 1 5 5 C 1.47744 * 120.00270 * 179.97438 * 3 2 1 6 6 C 1.39555 * 120.11261 * 353.72673 * 5 3 2 7 7 C 1.38582 * 119.77158 * 180.02562 * 6 5 3 8 8 N 1.39958 * 119.99587 * 180.02562 * 7 6 5 9 9 C 1.34779 * 119.99408 * 328.87041 * 8 7 6 10 10 O 1.21286 * 120.00743 * 354.23887 * 9 8 7 11 11 C 1.50708 * 119.99454 * 174.23478 * 9 8 7 12 12 C 1.52995 * 109.46888 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47408 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99408 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00466 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99611 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00122 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47447 * 60.00058 * 17 15 13 19 19 H 1.48497 * 109.47270 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47227 * 300.00033 * 17 15 13 21 21 C 1.38996 * 120.00768 * 359.97239 * 7 6 5 22 22 C 1.38215 * 120.23348 * 0.28196 * 21 7 6 23 23 C 1.38014 * 120.23002 * 359.48396 * 22 21 7 24 24 C 1.50695 * 120.00681 * 180.25486 * 23 22 21 25 25 H 1.09000 * 109.47329 * 300.00096 * 1 2 3 26 26 H 1.08996 * 109.47403 * 60.00038 * 1 2 3 27 27 H 1.09003 * 109.47272 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.11071 * 0.04273 * 6 5 3 29 29 H 0.96993 * 119.99985 * 148.87541 * 8 7 6 30 30 H 1.08993 * 109.47037 * 300.00015 * 11 9 8 31 31 H 1.09001 * 109.46926 * 60.00149 * 11 9 8 32 32 H 1.09005 * 109.47401 * 300.00366 * 12 11 9 33 33 H 1.09001 * 109.47415 * 60.00203 * 12 11 9 34 34 H 0.97009 * 119.99615 * 180.02562 * 16 15 13 35 35 H 1.08002 * 119.88445 * 180.02562 * 21 7 6 36 36 H 1.08007 * 119.88773 * 179.71845 * 22 21 7 37 37 H 1.08997 * 109.47798 * 262.71663 * 24 23 22 38 38 H 1.09001 * 109.47364 * 22.72182 * 24 23 22 39 39 H 1.09008 * 109.46911 * 142.71620 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4019 2.2191 -0.0005 5 6 3.5390 1.2777 0.0006 6 6 4.3010 0.1161 0.1330 7 6 5.6844 0.1969 0.1332 8 7 6.4532 -0.9651 0.2652 9 6 5.9845 -2.0052 0.9829 10 8 4.9460 -1.8974 1.6000 11 6 6.7509 -3.3024 1.0184 12 6 6.0073 -4.3101 1.8972 13 6 6.7739 -5.6070 1.9333 14 1 7.6988 -5.7030 1.3840 15 6 6.2945 -6.6710 2.6676 16 7 5.1680 -6.5543 3.3360 17 14 7.2445 -8.2788 2.7117 18 1 8.5989 -8.0384 3.2709 19 1 6.5228 -9.2569 3.5647 20 1 7.3666 -8.8197 1.3341 21 6 6.3086 1.4318 0.0012 22 6 5.5541 2.5830 -0.1248 23 6 4.1758 2.5133 -0.1310 24 6 3.3582 3.7710 -0.2743 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.8142 -0.8426 0.2348 29 1 7.3233 -1.0219 -0.1597 30 1 6.8406 -3.6992 0.0073 31 1 7.7451 -3.1258 1.4290 32 1 5.9171 -3.9134 2.9085 33 1 5.0132 -4.4866 1.4862 34 1 4.8309 -7.3028 3.8529 35 1 7.3869 1.4925 0.0011 36 1 6.0449 3.5402 -0.2224 37 1 3.0415 4.1129 0.7110 38 1 3.9611 4.5441 -0.7507 39 1 2.4803 3.5658 -0.8872 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291891041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:57 Heat of formation + Delta-G solvation = -125.344760 kcal Electronic energy + Delta-G solvation = -22422.935172 eV Core-core repulsion = 18908.510760 eV Total energy + Delta-G solvation = -3514.424412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.98214 -41.24154 -39.56813 -37.66158 -36.07788 -35.55775 -33.29285 -32.60592 -32.21914 -28.90308 -28.24076 -26.93992 -25.25668 -23.97121 -22.92482 -21.76196 -21.19013 -19.42096 -18.79838 -18.30799 -17.55612 -17.51429 -16.96731 -16.79202 -16.50049 -16.35989 -15.80801 -15.18295 -14.99010 -14.68384 -14.54746 -14.36305 -14.15229 -13.93876 -13.36434 -13.26820 -13.15181 -13.02180 -12.82263 -12.77867 -12.65122 -12.50882 -11.90418 -11.88025 -11.64443 -11.39612 -11.31565 -11.20509 -10.76033 -10.54763 -10.09496 -9.07639 -8.17176 -6.31147 -0.40802 0.21262 1.33792 1.43277 1.47429 1.55061 1.66083 1.67927 2.05922 2.44509 2.70821 3.16195 3.52485 3.83123 3.88345 3.97455 4.13440 4.19282 4.25475 4.30106 4.41486 4.50550 4.55341 4.60817 4.77609 4.80591 4.82347 5.00161 5.05898 5.17680 5.20313 5.29846 5.38566 5.51019 5.57277 5.63379 5.85384 5.89811 6.17592 6.46656 6.59165 6.87247 7.20470 7.39238 8.95168 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021077 B = 0.003349 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.169190 B = 8359.127455 C = 9529.077642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.505 3.495 4 O -0.516 6.516 5 C -0.137 4.137 6 C -0.089 4.089 7 C 0.118 3.882 8 N -0.660 5.660 9 C 0.510 3.490 10 O -0.563 6.563 11 C -0.116 4.116 12 C 0.040 3.960 13 C -0.543 4.543 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.938 5.938 17 Si 0.973 3.027 18 H -0.262 1.262 19 H -0.290 1.290 20 H -0.262 1.262 21 C -0.091 4.091 22 C -0.102 4.102 23 C -0.045 4.045 24 C -0.114 4.114 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.433 0.567 30 H 0.111 0.889 31 H 0.113 0.887 32 H -0.017 1.017 33 H -0.017 1.017 34 H 0.262 0.738 35 H 0.175 0.825 36 H 0.179 0.821 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.289 20.116 -11.543 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.287 6.287 3 C 0.352 3.648 4 O -0.408 6.408 5 C -0.139 4.139 6 C -0.110 4.110 7 C 0.024 3.976 8 N -0.307 5.307 9 C 0.300 3.700 10 O -0.440 6.440 11 C -0.155 4.155 12 C 0.003 3.997 13 C -0.581 4.581 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.797 3.203 18 H -0.186 1.186 19 H -0.216 1.216 20 H -0.187 1.187 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.046 4.046 24 C -0.170 4.170 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.273 0.727 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.002 0.998 33 H 0.001 0.999 34 H 0.071 0.929 35 H 0.192 0.808 36 H 0.196 0.804 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.228 20.289 -11.002 23.112 hybrid contribution -0.263 -1.321 0.375 1.398 sum 0.965 18.968 -10.626 21.763 Atomic orbital electron populations 1.23565 0.74193 1.05522 1.03025 1.86630 1.25564 1.32724 1.83781 1.21446 0.89653 0.81328 0.72325 1.90744 1.67358 1.35569 1.47108 1.18952 0.88688 0.95048 1.11197 1.21368 0.93847 0.98344 0.97466 1.17915 0.90103 0.87891 1.01733 1.43499 1.22376 1.12828 1.52031 1.21665 0.85491 0.86179 0.76672 1.90702 1.26131 1.83281 1.43928 1.21666 1.00236 0.90001 1.03638 1.18705 0.94406 0.93126 0.93492 1.21689 1.08716 0.97730 1.29959 0.90359 1.26130 0.95974 1.03409 0.94941 1.70177 1.22356 1.33042 1.32194 0.85387 0.78588 0.77791 0.78560 1.18615 1.21571 1.18694 1.21575 1.02446 0.89043 0.98024 1.21261 0.91221 0.99953 0.99590 1.20305 0.95379 0.93374 0.95546 1.21026 0.99666 0.93284 1.03010 0.91636 0.90718 0.86006 0.86489 0.72723 0.87103 0.86882 0.99846 0.99900 0.92923 0.80781 0.80389 0.91098 0.88766 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 16 2 O -0.37 -11.79 9.83 -56.15 -0.55 -12.35 16 3 C 0.51 15.93 7.83 70.34 0.55 16.49 16 4 O -0.52 -16.21 13.15 19.90 0.26 -15.95 16 5 C -0.14 -4.05 5.87 -20.11 -0.12 -4.17 16 6 C -0.09 -2.91 8.23 22.67 0.19 -2.73 16 7 C 0.12 3.08 6.31 38.11 0.24 3.32 16 8 N -0.66 -16.74 5.35 -303.59 -1.62 -18.36 16 9 C 0.51 18.80 7.57 87.66 0.66 19.46 16 10 O -0.56 -26.91 13.54 -3.05 -0.04 -26.95 16 11 C -0.12 -4.35 5.64 29.85 0.17 -4.18 16 12 C 0.04 2.19 4.26 29.85 0.13 2.32 16 13 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 14 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 15 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 16 N -0.94 -59.15 13.29 21.45 0.28 -58.86 16 17 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 21 C -0.09 -1.54 9.95 22.45 0.22 -1.31 16 22 C -0.10 -1.61 9.65 22.21 0.21 -1.40 16 23 C -0.04 -1.00 5.92 -19.58 -0.12 -1.12 16 24 C -0.11 -2.15 8.68 71.23 0.62 -1.53 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.12 4.68 5.83 -2.91 -0.02 4.66 16 29 H 0.43 6.79 8.81 -92.71 -0.82 5.97 16 30 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 31 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 32 H -0.02 -1.04 8.10 -2.38 -0.02 -1.06 16 33 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 34 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 35 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 36 H 0.18 1.31 8.05 -2.91 -0.02 1.28 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 1.11 8.03 -2.39 -0.02 1.09 16 39 H 0.07 1.63 5.92 -2.38 -0.01 1.62 16 Total: -1.00 -81.76 336.85 5.27 -76.49 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.26 Total: 13.15 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 4.65 Total: -2.90 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -1.34 Total: -77.22 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -0.33 Total: -55.24 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -81.76 5.27 -76.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291891041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.854 kcal (2) G-P(sol) polarization free energy of solvation -81.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds