Wall clock time and date at job start Tue Mar 31 2020 06:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 110.51507 * 2 1 4 4 O 1.43985 * 110.56854 * 122.75552 * 2 1 3 5 5 C 1.36605 * 105.47372 * 91.41835 * 4 2 1 6 6 C 1.38558 * 131.43954 * 197.57307 * 5 4 2 7 7 C 1.38172 * 120.11166 * 180.21292 * 6 5 4 8 8 C 1.38848 * 120.07374 * 359.48359 * 7 6 5 9 9 N 1.40091 * 120.00134 * 180.27754 * 8 7 6 10 10 C 1.34782 * 119.99672 * 144.91129 * 9 8 7 11 11 O 1.21289 * 120.00324 * 4.61238 * 10 9 8 12 12 C 1.50706 * 119.99977 * 184.62204 * 10 9 8 13 13 C 1.52998 * 109.47150 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.46791 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00766 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99524 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00019 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00222 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47039 * 90.00109 * 18 16 14 20 20 H 1.48505 * 109.47233 * 210.00037 * 18 16 14 21 21 H 1.48503 * 109.47257 * 329.99840 * 18 16 14 22 22 C 1.38806 * 119.99412 * 0.25836 * 8 7 6 23 23 C 1.38488 * 119.97481 * 359.97438 * 22 8 7 24 24 O 1.36515 * 131.45987 * 179.97438 * 23 22 8 25 25 H 1.09000 * 109.47476 * 297.94705 * 1 2 3 26 26 H 1.09000 * 109.47213 * 57.94213 * 1 2 3 27 27 H 1.09003 * 109.47666 * 177.94058 * 1 2 3 28 28 H 1.09000 * 109.47539 * 182.05348 * 3 2 1 29 29 H 1.08996 * 109.47113 * 302.05673 * 3 2 1 30 30 H 1.09000 * 109.47079 * 62.05538 * 3 2 1 31 31 H 1.07999 * 119.94682 * 359.95127 * 6 5 4 32 32 H 1.08004 * 119.96220 * 179.76710 * 7 6 5 33 33 H 0.97001 * 120.00777 * 324.90850 * 9 8 7 34 34 H 1.09002 * 109.46429 * 299.99656 * 12 10 9 35 35 H 1.09002 * 109.47386 * 59.99528 * 12 10 9 36 36 H 1.09006 * 109.46770 * 299.99449 * 13 12 10 37 37 H 1.09002 * 109.47325 * 59.99535 * 13 12 10 38 38 H 0.96999 * 120.00365 * 179.97438 * 17 16 14 39 39 H 1.07989 * 120.01062 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0661 1.4330 0.0000 4 8 2.0358 -0.7294 1.1337 5 6 2.1943 -2.0147 0.6989 6 6 2.3364 -3.2061 1.3918 7 6 2.4887 -4.3944 0.7033 8 6 2.4891 -4.3990 -0.6851 9 7 2.6379 -5.6054 -1.3816 10 6 1.9852 -5.7965 -2.5453 11 8 1.3361 -4.8948 -3.0318 12 6 2.0617 -7.1308 -3.2418 13 6 1.2383 -7.0814 -4.5303 14 6 1.3154 -8.4155 -5.2270 15 1 1.8941 -9.2181 -4.7944 16 6 0.6469 -8.6113 -6.4170 17 7 0.7145 -9.7754 -7.0254 18 14 -0.3548 -7.2234 -7.1650 19 1 0.5085 -6.4213 -8.0688 20 1 -1.4879 -7.7918 -7.9384 21 1 -0.8812 -6.3536 -6.0825 22 6 2.3417 -3.2082 -1.3830 23 6 2.1938 -2.0161 -0.6939 24 8 2.0353 -0.7327 -1.1315 25 1 -0.3634 0.4816 0.9078 26 1 -0.3634 0.5455 -0.8710 27 1 -0.3634 -1.0270 -0.0369 28 1 3.1553 1.4134 -0.0368 29 1 1.6826 1.9644 -0.8709 30 1 1.7424 1.9420 0.9078 31 1 2.3323 -3.2056 2.4718 32 1 2.6031 -5.3213 1.2458 33 1 3.2105 -6.3031 -1.0265 34 1 3.1008 -7.3558 -3.4825 35 1 1.6645 -7.9061 -2.5866 36 1 0.1993 -6.8566 -4.2891 37 1 1.6351 -6.3061 -5.1857 38 1 0.2440 -9.9133 -7.8623 39 1 2.3424 -3.2114 -2.4629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292629732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:43 Heat of formation + Delta-G solvation = -78.053665 kcal Electronic energy + Delta-G solvation = -22617.218651 eV Core-core repulsion = 19104.844935 eV Total energy + Delta-G solvation = -3512.373716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.41995 -40.13832 -37.76298 -36.30817 -34.50607 -33.58182 -32.78270 -31.43297 -30.36847 -28.59632 -27.89380 -26.07434 -23.27367 -22.93017 -22.20148 -21.18541 -19.83967 -18.70389 -17.93183 -17.20139 -16.74220 -16.30788 -15.92059 -15.50126 -15.12786 -14.86637 -14.31467 -14.13278 -13.90388 -13.54549 -13.31219 -13.16732 -13.05366 -12.84378 -12.70745 -12.60892 -12.60073 -12.50015 -12.19114 -11.53812 -11.45000 -11.20481 -10.99466 -10.24924 -10.10081 -9.89005 -9.80974 -9.38145 -9.23531 -8.72475 -8.54346 -7.81631 -6.06500 -4.05873 0.99964 1.15324 2.52593 2.87442 3.07606 3.31977 3.35662 3.42599 3.52663 3.56143 4.24541 4.28154 4.43086 4.47731 4.77407 4.90030 4.99106 5.07135 5.17907 5.21300 5.24316 5.28715 5.28898 5.48181 5.59964 5.70229 5.72211 5.93459 5.97874 6.01032 6.09706 6.12936 6.24618 6.58499 6.65384 7.09976 7.29083 7.36102 7.49596 7.73610 8.35691 8.48777 8.95940 9.56157 11.06196 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.003288 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.389616 B = 8514.940715 C = 9364.816148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.255 3.745 3 C -0.144 4.144 4 O -0.302 6.302 5 C 0.006 3.994 6 C -0.082 4.082 7 C -0.142 4.142 8 C 0.168 3.832 9 N -0.680 5.680 10 C 0.509 3.491 11 O -0.518 6.518 12 C -0.120 4.120 13 C 0.001 3.999 14 C -0.527 4.527 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.902 5.902 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.261 1.261 22 C -0.108 4.108 23 C 0.053 3.947 24 O -0.298 6.298 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.414 0.586 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.025 0.975 37 H 0.020 0.980 38 H 0.264 0.736 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 17.916 19.362 26.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.180 3.820 3 C -0.201 4.201 4 O -0.219 6.219 5 C -0.039 4.039 6 C -0.102 4.102 7 C -0.163 4.163 8 C 0.072 3.928 9 N -0.327 5.327 10 C 0.299 3.701 11 O -0.391 6.391 12 C -0.160 4.160 13 C -0.037 4.037 14 C -0.564 4.564 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.541 5.541 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.129 4.129 23 C 0.008 3.992 24 O -0.214 6.214 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.250 0.750 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.043 0.957 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.518 18.628 18.775 26.681 hybrid contribution -0.337 0.350 -0.307 0.574 sum 3.181 18.978 18.468 26.671 Atomic orbital electron populations 1.22560 0.92943 1.04507 1.04229 1.24462 0.93579 0.91816 0.72107 1.21904 1.03101 0.90899 1.04233 1.87407 1.81840 1.16943 1.35741 1.19738 1.06549 0.85951 0.91635 1.19760 1.02648 0.87711 1.00033 1.20660 1.05583 0.98071 0.91985 1.17321 0.99389 0.85605 0.90467 1.43853 1.48929 1.15845 1.24091 1.21886 0.77051 0.91889 0.79249 1.90670 1.40174 1.44432 1.63863 1.21716 1.03796 0.91008 0.99463 1.19395 0.95422 0.97816 0.91101 1.21078 1.31757 0.97045 1.06563 0.90843 1.24970 0.96006 0.95509 0.96698 1.69908 1.43438 1.23055 1.17696 0.86804 0.80256 0.82763 0.79780 1.20195 1.21393 1.18553 1.20142 1.03928 0.86864 1.02002 1.19529 1.02689 0.85711 0.91297 1.87439 1.81355 1.16872 1.35758 0.89731 0.89625 0.91069 0.90506 0.89391 0.89423 0.84583 0.84178 0.74971 0.89083 0.89030 0.95706 0.96151 0.92654 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 9.19 37.15 0.34 -1.40 16 2 C 0.25 2.86 1.61 -26.74 -0.04 2.82 16 3 C -0.14 -1.12 9.39 37.16 0.35 -0.77 16 4 O -0.30 -3.82 10.82 -46.04 -0.50 -4.31 16 5 C 0.01 0.08 6.98 -39.07 -0.27 -0.19 16 6 C -0.08 -0.90 10.05 -39.49 -0.40 -1.29 16 7 C -0.14 -1.51 9.96 -39.38 -0.39 -1.90 16 8 C 0.17 2.25 6.30 -83.65 -0.53 1.73 16 9 N -0.68 -8.78 5.34 -9.84 -0.05 -8.83 16 10 C 0.51 8.78 7.67 -10.98 -0.08 8.69 16 11 O -0.52 -10.93 13.42 5.55 0.07 -10.86 16 12 C -0.12 -2.18 5.64 -27.88 -0.16 -2.33 16 13 C 0.00 0.01 3.33 -27.89 -0.09 -0.08 16 14 C -0.53 -14.74 9.66 -34.44 -0.33 -15.07 16 15 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 18 Si 0.88 22.34 27.47 -169.99 -4.67 17.67 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 22 C -0.11 -1.70 8.71 -39.28 -0.34 -2.04 16 23 C 0.05 0.79 6.94 -39.10 -0.27 0.52 16 24 O -0.30 -4.30 10.82 -45.74 -0.49 -4.80 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.79 7.94 -51.93 -0.41 0.38 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.41 3.74 8.82 -40.82 -0.36 3.38 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.02 0.63 7.16 -51.93 -0.37 0.25 16 37 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.15 2.70 6.22 -52.49 -0.33 2.37 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -34.73 330.55 -7.46 -42.18 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.25 Total: 0.26 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -2.32 Total: -9.39 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.72 Total: -35.73 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.92 Total: -19.97 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.73 -7.46 -42.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292629732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.871 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds