Wall clock time and date at job start Tue Mar 31 2020 06:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 110.51507 * 2 1 4 4 O 1.43985 * 110.56854 * 122.75552 * 2 1 3 5 5 C 1.36605 * 105.47372 * 91.41835 * 4 2 1 6 6 C 1.38558 * 131.43954 * 197.57307 * 5 4 2 7 7 C 1.38172 * 120.11166 * 180.21292 * 6 5 4 8 8 C 1.38848 * 120.07374 * 359.48359 * 7 6 5 9 9 N 1.40091 * 120.00134 * 180.27754 * 8 7 6 10 10 C 1.34782 * 119.99672 * 144.91129 * 9 8 7 11 11 O 1.21289 * 120.00324 * 4.61238 * 10 9 8 12 12 C 1.50706 * 119.99977 * 184.62204 * 10 9 8 13 13 C 1.52998 * 109.47150 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.46791 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00766 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99524 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00019 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00222 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47039 * 90.00109 * 18 16 14 20 20 H 1.48505 * 109.47233 * 210.00037 * 18 16 14 21 21 H 1.48503 * 109.47257 * 329.99840 * 18 16 14 22 22 C 1.38806 * 119.99412 * 0.25836 * 8 7 6 23 23 C 1.38488 * 119.97481 * 359.97438 * 22 8 7 24 24 O 1.36515 * 131.45987 * 179.97438 * 23 22 8 25 25 H 1.09000 * 109.47476 * 297.94705 * 1 2 3 26 26 H 1.09000 * 109.47213 * 57.94213 * 1 2 3 27 27 H 1.09003 * 109.47666 * 177.94058 * 1 2 3 28 28 H 1.09000 * 109.47539 * 182.05348 * 3 2 1 29 29 H 1.08996 * 109.47113 * 302.05673 * 3 2 1 30 30 H 1.09000 * 109.47079 * 62.05538 * 3 2 1 31 31 H 1.07999 * 119.94682 * 359.95127 * 6 5 4 32 32 H 1.08004 * 119.96220 * 179.76710 * 7 6 5 33 33 H 0.97001 * 120.00777 * 324.90850 * 9 8 7 34 34 H 1.09002 * 109.46429 * 299.99656 * 12 10 9 35 35 H 1.09002 * 109.47386 * 59.99528 * 12 10 9 36 36 H 1.09006 * 109.46770 * 299.99449 * 13 12 10 37 37 H 1.09002 * 109.47325 * 59.99535 * 13 12 10 38 38 H 0.96999 * 120.00365 * 179.97438 * 17 16 14 39 39 H 1.07989 * 120.01062 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0661 1.4330 0.0000 4 8 2.0358 -0.7294 1.1337 5 6 2.1943 -2.0147 0.6989 6 6 2.3364 -3.2061 1.3918 7 6 2.4887 -4.3944 0.7033 8 6 2.4891 -4.3990 -0.6851 9 7 2.6379 -5.6054 -1.3816 10 6 1.9852 -5.7965 -2.5453 11 8 1.3361 -4.8948 -3.0318 12 6 2.0617 -7.1308 -3.2418 13 6 1.2383 -7.0814 -4.5303 14 6 1.3154 -8.4155 -5.2270 15 1 1.8941 -9.2181 -4.7944 16 6 0.6469 -8.6113 -6.4170 17 7 0.7145 -9.7754 -7.0254 18 14 -0.3548 -7.2234 -7.1650 19 1 0.5085 -6.4213 -8.0688 20 1 -1.4879 -7.7918 -7.9384 21 1 -0.8812 -6.3536 -6.0825 22 6 2.3417 -3.2082 -1.3830 23 6 2.1938 -2.0161 -0.6939 24 8 2.0353 -0.7327 -1.1315 25 1 -0.3634 0.4816 0.9078 26 1 -0.3634 0.5455 -0.8710 27 1 -0.3634 -1.0270 -0.0369 28 1 3.1553 1.4134 -0.0368 29 1 1.6826 1.9644 -0.8709 30 1 1.7424 1.9420 0.9078 31 1 2.3323 -3.2056 2.4718 32 1 2.6031 -5.3213 1.2458 33 1 3.2105 -6.3031 -1.0265 34 1 3.1008 -7.3558 -3.4825 35 1 1.6645 -7.9061 -2.5866 36 1 0.1993 -6.8566 -4.2891 37 1 1.6351 -6.3061 -5.1857 38 1 0.2440 -9.9133 -7.8623 39 1 2.3424 -3.2114 -2.4629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292629732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:43 Heat of formation + Delta-G solvation = -101.701398 kcal Electronic energy + Delta-G solvation = -22618.244093 eV Core-core repulsion = 19104.844935 eV Total energy + Delta-G solvation = -3513.399159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.35500 -41.38195 -38.87556 -37.27581 -35.68508 -35.52952 -33.67329 -33.28553 -31.42136 -29.73086 -28.61740 -27.76822 -24.44304 -24.04434 -23.17267 -22.64842 -21.24022 -19.75196 -19.28191 -18.74386 -17.82919 -17.52817 -17.14459 -16.57576 -16.37280 -16.22911 -15.78439 -15.32774 -15.08915 -14.90244 -14.65838 -14.41237 -14.14395 -13.96164 -13.88130 -13.51672 -13.42656 -13.40323 -13.17331 -13.06560 -12.91962 -12.43594 -12.17640 -12.12582 -11.96261 -11.78243 -11.40378 -10.92032 -10.79977 -10.77623 -9.76976 -8.81715 -8.31943 -6.34419 -0.00496 0.16426 1.32091 1.34625 1.48556 1.48846 1.67364 2.09270 2.33949 2.34748 2.56853 3.04087 3.46142 3.48832 3.52036 3.81733 3.97905 4.07651 4.15105 4.32417 4.39634 4.43922 4.48743 4.51476 4.56244 4.68975 4.75224 4.93003 4.98550 5.01003 5.08095 5.16614 5.18774 5.23374 5.34794 5.43495 5.58810 5.61950 6.12606 6.22667 6.42652 6.72538 7.14786 7.31021 8.83612 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.003288 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.389616 B = 8514.940715 C = 9364.816148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.240 3.760 3 C -0.141 4.141 4 O -0.307 6.307 5 C 0.000 4.000 6 C -0.075 4.075 7 C -0.119 4.119 8 C 0.150 3.850 9 N -0.656 5.656 10 C 0.514 3.486 11 O -0.564 6.564 12 C -0.112 4.112 13 C 0.002 3.998 14 C -0.527 4.527 15 H 0.055 0.945 16 C 0.015 3.985 17 N -0.943 5.943 18 Si 0.935 3.065 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.134 4.134 23 C 0.028 3.972 24 O -0.323 6.323 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.173 0.827 32 H 0.183 0.817 33 H 0.435 0.565 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.010 0.990 37 H 0.008 0.992 38 H 0.267 0.733 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.175 18.851 22.107 29.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.167 3.833 3 C -0.198 4.198 4 O -0.224 6.224 5 C -0.045 4.045 6 C -0.094 4.094 7 C -0.139 4.139 8 C 0.056 3.944 9 N -0.304 5.304 10 C 0.304 3.696 11 O -0.441 6.441 12 C -0.152 4.152 13 C -0.036 4.036 14 C -0.565 4.565 15 H 0.073 0.927 16 C -0.183 4.183 17 N -0.583 5.583 18 Si 0.760 3.240 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.155 4.155 23 C -0.017 4.017 24 O -0.241 6.241 25 H 0.127 0.873 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.190 0.810 32 H 0.201 0.799 33 H 0.276 0.724 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.029 0.971 37 H 0.026 0.974 38 H 0.076 0.924 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.723 19.555 21.567 29.349 hybrid contribution -0.341 0.072 -1.070 1.126 sum 3.382 19.627 20.496 28.579 Atomic orbital electron populations 1.22580 0.91819 1.03536 1.05978 1.25008 0.94623 0.92749 0.70917 1.21988 1.02710 0.88961 1.06092 1.87382 1.82004 1.16761 1.36269 1.20083 1.06368 0.86971 0.91048 1.20265 1.00686 0.86651 1.01775 1.21076 1.02634 0.99708 0.90467 1.17485 1.00614 0.84663 0.91683 1.43445 1.48051 1.16336 1.22589 1.21577 0.76990 0.90832 0.80179 1.90673 1.42517 1.45561 1.65391 1.21522 1.03982 0.92390 0.97264 1.19253 0.95692 0.95066 0.93558 1.21420 1.30480 0.98113 1.06462 0.92720 1.25769 0.97411 0.97585 0.97558 1.70015 1.44952 1.24896 1.18486 0.85880 0.79137 0.80000 0.78986 1.19547 1.20412 1.18693 1.20065 1.06111 0.88578 1.00759 1.19685 1.03855 0.85704 0.92424 1.87401 1.81875 1.17133 1.37643 0.87259 0.88622 0.93281 0.91112 0.88071 0.86995 0.81005 0.79941 0.72448 0.87053 0.86893 0.97147 0.97358 0.92394 0.86246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 9.19 71.98 0.66 -2.60 16 2 C 0.24 5.23 1.61 30.59 0.05 5.28 16 3 C -0.14 -1.97 9.39 71.98 0.68 -1.30 16 4 O -0.31 -7.33 10.82 -77.29 -0.84 -8.17 16 5 C 0.00 0.01 6.98 22.60 0.16 0.16 16 6 C -0.07 -1.38 10.05 22.33 0.22 -1.16 16 7 C -0.12 -2.09 9.96 22.40 0.22 -1.87 16 8 C 0.15 3.83 6.30 38.10 0.24 4.07 16 9 N -0.66 -15.69 5.34 -303.43 -1.62 -17.31 16 10 C 0.51 17.40 7.67 87.66 0.67 18.07 16 11 O -0.56 -24.40 13.42 -3.06 -0.04 -24.44 16 12 C -0.11 -3.93 5.64 29.85 0.17 -3.76 16 13 C 0.00 0.11 3.33 29.85 0.10 0.21 16 14 C -0.53 -29.73 9.66 25.60 0.25 -29.48 16 15 H 0.05 3.22 7.99 -2.91 -0.02 3.19 16 16 C 0.01 0.86 5.47 84.65 0.46 1.32 16 17 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 18 Si 0.94 46.64 27.47 68.60 1.88 48.53 16 19 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.26 -13.05 6.54 99.48 0.65 -12.40 16 22 C -0.13 -4.32 8.71 22.47 0.20 -4.12 16 23 C 0.03 0.86 6.94 22.58 0.16 1.02 16 24 O -0.32 -9.65 10.82 -76.23 -0.82 -10.48 16 25 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.09 7.94 -2.39 -0.02 1.07 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 32 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.43 6.43 8.82 -92.71 -0.82 5.61 16 34 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 35 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.01 0.52 7.16 -2.38 -0.02 0.50 16 37 H 0.01 0.41 7.53 -2.39 -0.02 0.39 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.12 4.58 6.22 -2.92 -0.02 4.56 16 Total: -1.00 -78.52 330.55 3.29 -75.23 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.20 Total: 9.07 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 4.24 Total: -14.15 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -1.32 Total: -75.59 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.70 Total: -43.08 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.88 Total: 48.53 kcal Total: -78.52 3.29 -75.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292629732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.472 kcal (2) G-P(sol) polarization free energy of solvation -78.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds