Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47348 * 2 1 4 4 O 1.42898 * 113.27565 * 313.06882 * 3 2 1 5 5 C 1.53492 * 114.20819 * 180.02562 * 3 2 1 6 6 N 1.47065 * 87.98122 * 220.34485 * 5 3 2 7 7 C 1.34782 * 136.05768 * 207.08414 * 6 5 3 8 8 O 1.21599 * 119.99914 * 355.38863 * 7 6 5 9 9 C 1.47531 * 120.00394 * 175.39210 * 7 6 5 10 10 C 1.39663 * 120.19741 * 33.58845 * 9 7 6 11 11 C 1.37834 * 119.91913 * 180.02562 * 10 9 7 12 12 C 1.38568 * 120.32196 * 0.02780 * 11 10 9 13 13 C 1.38024 * 120.40276 * 359.67748 * 12 11 10 14 14 C 1.38833 * 120.07146 * 0.59425 * 13 12 11 15 15 O 1.35520 * 120.15922 * 179.69867 * 14 13 12 16 16 C 1.34810 * 117.00328 * 5.92365 * 15 14 13 17 17 H 1.08002 * 119.99643 * 354.89602 * 16 15 14 18 18 C 1.38696 * 120.00219 * 174.62338 * 16 15 14 19 19 N 1.31521 * 119.99887 * 0.27422 * 18 16 15 20 20 Si 1.86802 * 120.00001 * 180.26963 * 18 16 15 21 21 H 1.48506 * 109.46826 * 60.00355 * 20 18 16 22 22 H 1.48501 * 109.47226 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47479 * 300.00312 * 20 18 16 24 24 C 1.47056 * 87.88829 * 27.34334 * 6 5 3 25 25 H 1.08995 * 109.47486 * 59.99596 * 1 2 3 26 26 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47130 * 299.99735 * 1 2 3 28 28 H 1.08996 * 109.47556 * 240.00128 * 2 1 3 29 29 H 1.09005 * 109.47523 * 119.99826 * 2 1 3 30 30 H 0.96703 * 114.00607 * 46.93671 * 4 3 2 31 31 H 1.08993 * 113.46790 * 105.56652 * 5 3 2 32 32 H 1.09004 * 113.46737 * 335.12236 * 5 3 2 33 33 H 1.08002 * 120.04334 * 0.05408 * 10 9 7 34 34 H 1.08003 * 119.83550 * 180.02562 * 11 10 9 35 35 H 1.08005 * 119.79747 * 179.97438 * 12 11 10 36 36 H 1.08007 * 119.96302 * 180.30219 * 13 12 11 37 37 H 0.96997 * 119.99843 * 179.97438 * 19 18 16 38 38 H 1.09003 * 113.47230 * 87.43677 * 24 6 5 39 39 H 1.09010 * 113.46793 * 217.88100 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.3831 2.2737 -0.9590 5 6 3.5697 1.5692 -0.0006 6 7 3.4260 2.6812 0.9511 7 6 4.1358 3.7807 1.2733 8 8 5.2198 3.9771 0.7584 9 6 3.5978 4.7460 2.2507 10 6 2.8145 4.3020 3.3183 11 6 2.3143 5.2089 4.2278 12 6 2.5842 6.5608 4.0884 13 6 3.3618 7.0136 3.0417 14 6 3.8694 6.1152 2.1128 15 8 4.6280 6.5585 1.0810 16 6 4.9561 7.8660 1.0801 17 1 4.5487 8.5255 1.8321 18 6 5.8211 8.3633 0.1167 19 7 6.3171 7.5602 -0.7992 20 14 6.2816 10.1737 0.1199 21 1 6.9426 10.5139 1.4055 22 1 7.2122 10.4498 -1.0039 23 1 5.0558 10.9966 -0.0395 24 6 2.1704 2.0620 1.4012 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 0.4196 2.1916 -0.9564 31 1 3.9797 1.8726 -0.9639 32 1 4.0774 0.7010 0.4197 33 1 2.6013 3.2493 3.4314 34 1 1.7091 4.8640 5.0532 35 1 2.1876 7.2641 4.8057 36 1 3.5717 8.0684 2.9426 37 1 6.9218 7.9080 -1.4731 38 1 2.3090 1.3237 2.1910 39 1 1.3881 2.7853 1.6321 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298091637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = -37.220613 kcal Electronic energy + Delta-G solvation = -23380.827410 eV Core-core repulsion = 19870.224348 eV Total energy + Delta-G solvation = -3510.603062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54052 -39.12031 -37.35847 -36.29934 -35.20181 -32.78387 -32.31355 -30.78324 -28.94754 -28.15579 -26.03225 -25.34552 -24.12364 -22.41128 -21.35625 -20.36318 -19.06058 -18.02157 -17.28770 -16.87577 -16.28828 -15.54334 -15.22667 -14.86446 -14.67454 -14.36206 -14.33446 -13.87707 -13.60062 -13.53821 -13.21584 -12.68971 -12.58750 -12.52151 -12.31173 -12.06156 -11.71426 -11.66822 -11.35256 -11.31219 -11.08986 -10.87128 -10.80493 -10.59675 -10.45510 -9.88771 -9.54289 -8.89937 -8.83349 -8.28823 -8.20142 -7.28931 -6.41295 -4.01845 1.79358 2.32961 3.13713 3.16394 3.18823 3.25200 3.64268 3.86490 3.96440 4.21067 4.50353 4.63374 4.72987 4.98677 5.06711 5.15775 5.21136 5.33827 5.37844 5.47109 5.54291 5.55464 5.63235 5.69477 5.76908 5.77698 5.89387 5.98205 5.98848 6.16348 6.31721 6.59301 6.74698 6.96641 7.08251 7.27246 7.32784 7.58014 7.71127 7.96666 8.25621 8.98048 9.03257 9.69217 10.73356 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.004654 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.640677 B = 6014.302143 C = 6953.625730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.137 4.137 3 C 0.091 3.909 4 O -0.526 6.526 5 C 0.116 3.884 6 N -0.643 5.643 7 C 0.596 3.404 8 O -0.505 6.505 9 C -0.214 4.214 10 C -0.041 4.041 11 C -0.230 4.230 12 C -0.052 4.052 13 C -0.237 4.237 14 C 0.190 3.810 15 O -0.137 6.137 16 C -0.402 4.402 17 H 0.094 0.906 18 C 0.044 3.956 19 N -0.838 5.838 20 Si 0.942 3.058 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.269 1.269 24 C 0.076 3.924 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.376 0.624 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.272 0.728 38 H 0.086 0.914 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.384 -12.716 4.798 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.175 4.175 3 C 0.048 3.952 4 O -0.332 6.332 5 C -0.007 4.007 6 N -0.381 5.381 7 C 0.389 3.611 8 O -0.379 6.379 9 C -0.219 4.219 10 C -0.059 4.059 11 C -0.249 4.249 12 C -0.071 4.071 13 C -0.256 4.256 14 C 0.131 3.869 15 O -0.036 6.036 16 C -0.478 4.478 17 H 0.111 0.889 18 C -0.163 4.163 19 N -0.469 5.469 20 Si 0.766 3.234 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.049 4.049 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.224 0.776 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.150 0.850 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.707 -12.272 3.980 16.766 hybrid contribution -0.433 0.755 0.307 0.922 sum -11.140 -11.518 4.287 16.587 Atomic orbital electron populations 1.21790 0.95288 1.02487 1.02140 1.21948 0.96702 0.95337 1.03540 1.22538 0.94084 0.89346 0.89192 1.86640 1.23689 1.65363 1.57485 1.22910 0.93055 0.89596 0.95171 1.49262 1.25152 1.22743 1.40970 1.17759 0.83373 0.78767 0.81244 1.90884 1.19915 1.73934 1.53165 1.18687 1.11134 0.90909 1.01126 1.20806 0.93762 0.98360 0.93020 1.20455 1.08592 0.93397 1.02438 1.20883 0.95076 0.95249 0.95895 1.21127 1.05664 1.00421 0.98391 1.19206 0.89588 0.90991 0.87137 1.84075 1.55933 1.27399 1.36215 1.21405 1.28829 0.81640 1.15931 0.88872 1.25387 0.95445 1.00404 0.95092 1.70103 1.27816 1.35395 1.13621 0.85776 0.78846 0.80276 0.78474 1.19346 1.20156 1.19383 1.23743 0.87949 0.96401 0.96781 0.92282 0.91982 0.92156 0.90584 0.90262 0.77551 0.89824 0.89106 0.86975 0.87281 0.87152 0.85020 0.91783 0.89600 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.36 37.15 0.35 -0.59 16 2 C -0.14 -1.02 5.72 -26.73 -0.15 -1.17 16 3 C 0.09 1.05 1.67 -89.97 -0.15 0.90 16 4 O -0.53 -7.07 13.52 -35.23 -0.48 -7.55 16 5 C 0.12 1.72 8.04 -8.51 -0.07 1.65 16 6 N -0.64 -11.86 3.67 -186.31 -0.68 -12.54 16 7 C 0.60 14.43 7.62 -12.47 -0.09 14.34 16 8 O -0.51 -14.87 16.67 -12.92 -0.22 -15.08 16 9 C -0.21 -4.98 5.80 -104.81 -0.61 -5.58 16 10 C -0.04 -0.75 8.69 -39.20 -0.34 -1.09 16 11 C -0.23 -3.91 10.03 -39.61 -0.40 -4.31 16 12 C -0.05 -0.96 10.03 -39.54 -0.40 -1.35 16 13 C -0.24 -5.26 9.16 -39.44 -0.36 -5.62 16 14 C 0.19 4.93 6.62 -38.60 -0.26 4.67 16 15 O -0.14 -4.21 8.36 -17.38 -0.15 -4.36 16 16 C -0.40 -11.75 9.49 30.90 0.29 -11.45 16 17 H 0.09 2.45 5.21 -52.49 -0.27 2.18 16 18 C 0.04 1.26 5.49 -17.52 -0.10 1.17 16 19 N -0.84 -26.03 13.67 55.48 0.76 -25.27 16 20 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 C 0.08 0.95 5.78 -8.38 -0.05 0.91 16 25 H 0.06 0.33 6.71 -51.93 -0.35 -0.02 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.49 7.89 -51.93 -0.41 0.08 16 30 H 0.38 3.35 6.93 45.56 0.32 3.67 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.09 1.07 8.10 -51.93 -0.42 0.64 16 33 H 0.11 1.68 6.25 -52.49 -0.33 1.36 16 34 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 35 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 37 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.09 0.83 7.92 -51.93 -0.41 0.42 16 39 H 0.08 1.05 7.58 -51.92 -0.39 0.66 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -38.19 329.46 -7.39 -45.58 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.24 Total: 5.78 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.33 Total: -7.55 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.07 Total: -37.82 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.84 Total: -26.99 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -38.19 -7.39 -45.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298091637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.359 kcal (2) G-P(sol) polarization free energy of solvation -38.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds