Wall clock time and date at job start Tue Mar 31 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47348 * 2 1 4 4 O 1.42898 * 113.27565 * 313.06882 * 3 2 1 5 5 C 1.53492 * 114.20819 * 180.02562 * 3 2 1 6 6 N 1.47065 * 87.98122 * 220.34485 * 5 3 2 7 7 C 1.34782 * 136.05768 * 207.08414 * 6 5 3 8 8 O 1.21599 * 119.99914 * 355.38863 * 7 6 5 9 9 C 1.47531 * 120.00394 * 175.39210 * 7 6 5 10 10 C 1.39663 * 120.19741 * 33.58845 * 9 7 6 11 11 C 1.37834 * 119.91913 * 180.02562 * 10 9 7 12 12 C 1.38568 * 120.32196 * 0.02780 * 11 10 9 13 13 C 1.38024 * 120.40276 * 359.67748 * 12 11 10 14 14 C 1.38833 * 120.07146 * 0.59425 * 13 12 11 15 15 O 1.35520 * 120.15922 * 179.69867 * 14 13 12 16 16 C 1.34810 * 117.00328 * 5.92365 * 15 14 13 17 17 H 1.08002 * 119.99643 * 354.89602 * 16 15 14 18 18 C 1.38696 * 120.00219 * 174.62338 * 16 15 14 19 19 N 1.31521 * 119.99887 * 0.27422 * 18 16 15 20 20 Si 1.86802 * 120.00001 * 180.26963 * 18 16 15 21 21 H 1.48506 * 109.46826 * 60.00355 * 20 18 16 22 22 H 1.48501 * 109.47226 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47479 * 300.00312 * 20 18 16 24 24 C 1.47056 * 87.88829 * 27.34334 * 6 5 3 25 25 H 1.08995 * 109.47486 * 59.99596 * 1 2 3 26 26 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47130 * 299.99735 * 1 2 3 28 28 H 1.08996 * 109.47556 * 240.00128 * 2 1 3 29 29 H 1.09005 * 109.47523 * 119.99826 * 2 1 3 30 30 H 0.96703 * 114.00607 * 46.93671 * 4 3 2 31 31 H 1.08993 * 113.46790 * 105.56652 * 5 3 2 32 32 H 1.09004 * 113.46737 * 335.12236 * 5 3 2 33 33 H 1.08002 * 120.04334 * 0.05408 * 10 9 7 34 34 H 1.08003 * 119.83550 * 180.02562 * 11 10 9 35 35 H 1.08005 * 119.79747 * 179.97438 * 12 11 10 36 36 H 1.08007 * 119.96302 * 180.30219 * 13 12 11 37 37 H 0.96997 * 119.99843 * 179.97438 * 19 18 16 38 38 H 1.09003 * 113.47230 * 87.43677 * 24 6 5 39 39 H 1.09010 * 113.46793 * 217.88100 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.3831 2.2737 -0.9590 5 6 3.5697 1.5692 -0.0006 6 7 3.4260 2.6812 0.9511 7 6 4.1358 3.7807 1.2733 8 8 5.2198 3.9771 0.7584 9 6 3.5978 4.7460 2.2507 10 6 2.8145 4.3020 3.3183 11 6 2.3143 5.2089 4.2278 12 6 2.5842 6.5608 4.0884 13 6 3.3618 7.0136 3.0417 14 6 3.8694 6.1152 2.1128 15 8 4.6280 6.5585 1.0810 16 6 4.9561 7.8660 1.0801 17 1 4.5487 8.5255 1.8321 18 6 5.8211 8.3633 0.1167 19 7 6.3171 7.5602 -0.7992 20 14 6.2816 10.1737 0.1199 21 1 6.9426 10.5139 1.4055 22 1 7.2122 10.4498 -1.0039 23 1 5.0558 10.9966 -0.0395 24 6 2.1704 2.0620 1.4012 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 0.4196 2.1916 -0.9564 31 1 3.9797 1.8726 -0.9639 32 1 4.0774 0.7010 0.4197 33 1 2.6013 3.2493 3.4314 34 1 1.7091 4.8640 5.0532 35 1 2.1876 7.2641 4.8057 36 1 3.5717 8.0684 2.9426 37 1 6.9218 7.9080 -1.4731 38 1 2.3090 1.3237 2.1910 39 1 1.3881 2.7853 1.6321 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298091637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:51 Heat of formation + Delta-G solvation = -67.748394 kcal Electronic energy + Delta-G solvation = -23382.151194 eV Core-core repulsion = 19870.224348 eV Total energy + Delta-G solvation = -3511.926846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.85064 -40.78322 -39.08609 -38.05720 -36.45304 -34.36948 -33.53877 -32.37600 -30.64661 -29.47263 -27.44456 -27.10676 -25.21554 -23.79007 -23.01633 -21.38997 -20.56304 -19.92074 -18.90016 -18.01204 -17.86067 -17.05816 -16.62325 -16.38046 -16.08881 -15.82371 -15.62504 -15.50649 -15.30671 -14.82482 -14.58265 -14.27487 -13.96304 -13.87793 -13.58485 -13.22593 -13.03320 -12.89920 -12.70163 -12.55102 -12.51462 -12.39509 -12.17238 -11.88410 -11.66858 -11.41376 -11.00789 -10.85228 -10.54917 -9.92162 -9.66844 -9.07318 -8.48301 -6.20344 0.14392 0.67864 1.29618 1.43590 1.48792 1.80411 1.96554 2.14192 2.81234 2.89874 3.13448 3.24475 3.42296 3.67116 3.79711 4.03659 4.11320 4.23149 4.35930 4.45248 4.47563 4.48990 4.53400 4.62169 4.63937 4.76322 4.87398 4.95899 4.98923 5.05080 5.16147 5.18658 5.28568 5.47411 5.48744 5.59119 5.65799 5.93544 6.14159 6.71846 6.80809 6.90976 7.28594 7.75461 8.73358 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.004654 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.640677 B = 6014.302143 C = 6953.625730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.125 4.125 3 C 0.108 3.892 4 O -0.560 6.560 5 C 0.097 3.903 6 N -0.650 5.650 7 C 0.580 3.420 8 O -0.586 6.586 9 C -0.234 4.234 10 C -0.033 4.033 11 C -0.195 4.195 12 C -0.041 4.041 13 C -0.253 4.253 14 C 0.145 3.855 15 O -0.206 6.206 16 C -0.427 4.427 17 H 0.109 0.891 18 C -0.026 4.026 19 N -0.913 5.913 20 Si 1.027 2.973 21 H -0.253 1.253 22 H -0.273 1.273 23 H -0.250 1.250 24 C 0.075 3.925 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.394 0.606 31 H 0.044 0.956 32 H 0.128 0.872 33 H 0.155 0.845 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.125 0.875 37 H 0.271 0.729 38 H 0.134 0.866 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.199 -14.338 8.684 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.163 4.163 3 C 0.066 3.934 4 O -0.370 6.370 5 C -0.026 4.026 6 N -0.386 5.386 7 C 0.374 3.626 8 O -0.466 6.466 9 C -0.239 4.239 10 C -0.052 4.052 11 C -0.213 4.213 12 C -0.059 4.059 13 C -0.273 4.273 14 C 0.091 3.909 15 O -0.109 6.109 16 C -0.503 4.503 17 H 0.127 0.873 18 C -0.224 4.224 19 N -0.549 5.549 20 Si 0.844 3.156 21 H -0.178 1.178 22 H -0.198 1.198 23 H -0.174 1.174 24 C -0.046 4.046 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.247 0.753 31 H 0.063 0.937 32 H 0.146 0.854 33 H 0.172 0.828 34 H 0.186 0.814 35 H 0.176 0.824 36 H 0.143 0.857 37 H 0.080 0.920 38 H 0.152 0.848 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.659 -13.975 7.933 21.751 hybrid contribution 0.430 0.927 -0.633 1.202 sum -14.229 -13.048 7.301 20.640 Atomic orbital electron populations 1.21808 0.93768 1.03542 1.02531 1.21912 0.97843 0.91655 1.04872 1.22492 0.91269 0.91698 0.87978 1.86601 1.25614 1.66458 1.58301 1.23420 0.96565 0.89406 0.93162 1.49351 1.26347 1.21814 1.41076 1.18140 0.82957 0.80354 0.81195 1.90827 1.23517 1.76143 1.56107 1.19159 1.12019 0.89982 1.02708 1.21301 0.91867 1.00988 0.91001 1.21200 1.05747 0.92293 1.02067 1.21450 0.92746 0.97143 0.94608 1.21298 1.06878 0.99794 0.99286 1.20031 0.89986 0.93135 0.87796 1.84076 1.59513 1.28015 1.39341 1.22010 1.29443 0.82140 1.16690 0.87341 1.26861 0.94992 1.06280 0.94254 1.70314 1.30481 1.38405 1.15741 0.84571 0.79074 0.72961 0.78986 1.17752 1.19754 1.17430 1.24225 0.84942 0.96788 0.98689 0.92456 0.90577 0.91323 0.90438 0.87834 0.75345 0.93680 0.85396 0.82780 0.81408 0.82425 0.85693 0.91975 0.84836 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.36 71.98 0.67 -0.53 16 2 C -0.12 -1.36 5.72 30.59 0.17 -1.18 16 3 C 0.11 2.27 1.67 -10.37 -0.02 2.25 16 4 O -0.56 -14.79 13.52 -148.98 -2.01 -16.80 16 5 C 0.10 2.89 8.04 83.18 0.67 3.56 16 6 N -0.65 -24.14 3.67 -862.09 -3.17 -27.31 16 7 C 0.58 29.73 7.62 86.69 0.66 30.39 16 8 O -0.59 -37.97 16.67 13.37 0.22 -37.75 16 9 C -0.23 -11.10 5.80 -19.99 -0.12 -11.21 16 10 C -0.03 -1.09 8.69 22.52 0.20 -0.90 16 11 C -0.19 -5.41 10.03 22.25 0.22 -5.18 16 12 C -0.04 -1.33 10.03 22.30 0.22 -1.10 16 13 C -0.25 -11.27 9.16 22.36 0.20 -11.07 16 14 C 0.14 7.92 6.62 22.91 0.15 8.07 16 15 O -0.21 -13.84 8.36 -2.61 -0.02 -13.86 16 16 C -0.43 -26.94 9.49 67.93 0.64 -26.29 16 17 H 0.11 6.08 5.21 -2.91 -0.02 6.06 16 18 C -0.03 -1.57 5.49 84.85 0.47 -1.11 16 19 N -0.91 -62.25 13.67 21.62 0.30 -61.95 16 20 Si 1.03 45.70 29.55 68.60 2.03 47.73 16 21 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 24 C 0.08 1.64 5.78 83.27 0.48 2.12 16 25 H 0.06 0.46 6.71 -2.39 -0.02 0.45 16 26 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 0.69 7.89 -2.38 -0.02 0.67 16 30 H 0.39 6.46 6.93 -74.06 -0.51 5.94 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.13 2.81 8.10 -2.38 -0.02 2.79 16 33 H 0.15 3.71 6.25 -2.91 -0.02 3.69 16 34 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 36 H 0.13 5.58 5.64 -2.91 -0.02 5.57 16 37 H 0.27 16.93 8.31 -92.71 -0.77 16.16 16 38 H 0.13 1.73 7.92 -2.39 -0.02 1.71 16 39 H 0.09 1.85 7.58 -2.38 -0.02 1.83 16 Total: -1.00 -100.28 329.46 2.55 -97.73 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.57 Total: 24.40 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 4.63 Total: -12.20 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -2.87 Total: -89.26 kcal Atomic # 8 Polarization: -66.59 SS G_CDS: -1.81 Total: -68.41 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -100.28 2.55 -97.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298091637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.983 kcal (2) G-P(sol) polarization free energy of solvation -100.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds