Wall clock time and date at job start Tue Mar 31 2020 06:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 C 1.50706 * 109.46908 * 240.00489 * 2 1 3 5 5 H 1.07999 * 119.99760 * 235.37723 * 4 2 1 6 6 C 1.37881 * 120.00039 * 55.38056 * 4 2 1 7 7 N 1.31508 * 119.99887 * 198.47984 * 6 4 2 8 8 Si 1.86797 * 119.99964 * 18.48211 * 6 4 2 9 9 H 1.48504 * 109.47441 * 84.47539 * 8 6 4 10 10 H 1.48501 * 109.47431 * 204.47801 * 8 6 4 11 11 H 1.48507 * 109.47480 * 324.47911 * 8 6 4 12 12 C 1.52998 * 109.47736 * 120.00294 * 2 1 3 13 13 N 1.46502 * 109.47092 * 300.00033 * 12 2 1 14 14 C 1.34774 * 120.00108 * 179.97438 * 13 12 2 15 15 O 1.21532 * 119.99759 * 359.97438 * 14 13 12 16 16 C 1.47953 * 119.99947 * 180.02562 * 14 13 12 17 17 C 1.39204 * 120.20083 * 353.63006 * 16 14 13 18 18 C 1.38223 * 120.00016 * 179.97438 * 17 16 14 19 19 C 1.38368 * 120.40876 * 0.02871 * 18 17 16 20 20 C 1.38206 * 120.40173 * 359.97368 * 19 18 17 21 21 C 1.39262 * 119.98990 * 0.02562 * 20 19 18 22 22 C 1.47832 * 120.19942 * 179.97438 * 21 20 19 23 23 O 1.21461 * 120.00037 * 126.24882 * 22 21 20 24 24 O 1.34704 * 120.00418 * 306.24509 * 22 21 20 25 25 H 1.08999 * 109.47183 * 308.29455 * 1 2 3 26 26 H 1.08993 * 109.47568 * 68.30039 * 1 2 3 27 27 H 1.09002 * 109.47185 * 188.30214 * 1 2 3 28 28 H 1.09000 * 109.47258 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47242 * 300.00546 * 3 2 1 30 30 H 1.09000 * 109.47015 * 60.00469 * 3 2 1 31 31 H 0.97004 * 119.99762 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47367 * 180.02562 * 12 2 1 33 33 H 1.08999 * 109.46785 * 59.99857 * 12 2 1 34 34 H 0.97006 * 119.99880 * 359.97438 * 13 12 2 35 35 H 1.07997 * 119.99424 * 0.25929 * 17 16 14 36 36 H 1.07994 * 119.79735 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.79947 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.00502 * 180.02562 * 20 19 18 39 39 H 0.96702 * 117.00645 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.7133 -1.5429 -1.1333 6 6 1.6224 -0.2973 -2.4806 7 7 1.7480 -1.1021 -3.5130 8 14 0.8890 1.4056 -2.7076 9 1 1.9816 2.3960 -2.8829 10 1 0.0169 1.4128 -3.9096 11 1 0.0852 1.7621 -1.5108 12 6 2.0401 -0.7213 1.2491 13 7 1.5518 -0.0307 2.4454 14 6 1.8771 -0.4915 3.6694 15 8 2.5751 -1.4801 3.7808 16 6 1.3835 0.2055 4.8775 17 6 0.6954 1.4098 4.7591 18 6 0.2356 2.0572 5.8905 19 6 0.4552 1.5162 7.1449 20 6 1.1364 0.3216 7.2820 21 6 1.6070 -0.3448 6.1533 22 6 2.3368 -1.6227 6.2945 23 8 1.9686 -2.6035 5.6799 24 8 3.4102 -1.6994 7.1048 25 1 -0.3633 0.6368 0.8065 26 1 -0.3634 0.3799 -0.9548 27 1 -0.3634 -1.0169 0.1484 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.4600 -0.8114 -4.3925 32 1 3.1301 -0.7208 1.2493 33 1 1.6768 -1.7489 1.2491 34 1 0.9944 0.7582 2.3565 35 1 0.5167 1.8358 3.7829 36 1 -0.2983 2.9911 5.7948 37 1 0.0919 2.0307 8.0224 38 1 1.3039 -0.0951 8.2642 39 1 3.8550 -2.5560 7.1644 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315939535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:04 Heat of formation + Delta-G solvation = -81.264450 kcal Electronic energy + Delta-G solvation = -23292.862269 eV Core-core repulsion = 19780.349323 eV Total energy + Delta-G solvation = -3512.512946 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.78303 -39.31820 -38.34977 -36.70719 -35.87989 -33.51507 -31.88124 -31.68170 -31.07558 -26.43323 -26.33836 -25.14858 -24.53258 -23.58867 -21.53929 -20.30311 -19.28430 -18.33837 -17.70494 -17.02401 -16.17378 -16.01844 -15.54431 -15.14946 -15.02159 -14.91036 -14.74539 -14.33942 -13.51894 -13.43348 -13.31603 -12.92737 -12.69573 -12.64026 -12.27269 -12.18636 -12.05182 -11.81725 -11.42904 -11.30386 -10.55828 -10.45623 -10.35151 -10.20714 -10.04630 -9.61692 -9.40032 -9.32577 -9.19850 -8.71600 -8.55646 -8.40243 -6.17589 -4.12050 0.42434 0.79240 2.36479 2.82031 3.04175 3.21960 3.29763 3.36659 3.43506 3.68223 4.34605 4.42928 4.53363 4.62320 4.90176 5.02469 5.09059 5.12939 5.38526 5.50796 5.75377 5.85667 5.91007 6.00391 6.02915 6.05087 6.33054 6.37830 6.47952 6.50343 6.53518 6.62651 6.68328 6.73273 6.93514 7.21166 7.41392 7.71337 7.82629 7.95725 8.41685 8.50603 8.90075 9.47875 10.95468 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.004158 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.174361 B = 6732.458319 C = 7574.226801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.029 3.971 3 C -0.146 4.146 4 C -0.516 4.516 5 H 0.076 0.924 6 C 0.079 3.921 7 N -0.886 5.886 8 Si 0.874 3.126 9 H -0.285 1.285 10 H -0.302 1.302 11 H -0.244 1.244 12 C 0.142 3.858 13 N -0.712 5.712 14 C 0.538 3.462 15 O -0.519 6.519 16 C -0.080 4.080 17 C -0.092 4.092 18 C -0.100 4.100 19 C -0.106 4.106 20 C -0.083 4.083 21 C -0.059 4.059 22 C 0.525 3.475 23 O -0.467 6.467 24 O -0.517 6.517 25 H 0.021 0.979 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.026 0.974 31 H 0.265 0.735 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.395 0.605 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 8.303 22.092 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 C -0.203 4.203 4 C -0.554 4.554 5 H 0.094 0.906 6 C -0.124 4.124 7 N -0.522 5.522 8 Si 0.706 3.294 9 H -0.212 1.212 10 H -0.231 1.231 11 H -0.170 1.170 12 C 0.020 3.980 13 N -0.364 5.364 14 C 0.323 3.677 15 O -0.396 6.396 16 C -0.083 4.083 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.101 4.101 21 C -0.061 4.061 22 C 0.365 3.635 23 O -0.352 6.352 24 O -0.329 6.329 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.231 0.769 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -3.110 7.611 21.703 23.208 hybrid contribution -0.333 0.817 -0.423 0.978 sum -3.443 8.427 21.281 23.146 Atomic orbital electron populations 1.22356 0.97761 1.00109 0.99957 1.18714 0.92530 0.92276 0.93694 1.22330 1.01170 0.98309 0.98477 1.20668 1.29713 1.16897 0.88138 0.90576 1.24940 0.94626 0.96930 0.95945 1.70000 1.46886 1.34776 1.00519 0.87525 0.79330 0.85851 0.76739 1.21202 1.23071 1.17014 1.21576 0.98655 0.96031 0.81696 1.46203 1.52668 1.31656 1.05866 1.18188 0.81712 0.84466 0.83380 1.90853 1.37510 1.24961 1.86322 1.20142 0.99717 0.95786 0.92689 1.21365 0.96178 0.93647 0.99880 1.21350 0.98418 0.99986 0.92096 1.21297 0.97835 0.95241 0.98046 1.21245 0.96849 0.94518 0.97532 1.18976 1.00107 0.93504 0.93482 1.20543 0.78642 0.88519 0.75821 1.90956 1.65397 1.37539 1.41265 1.84556 1.42549 1.42627 1.63206 0.96019 0.92316 0.93229 0.92828 0.93888 0.95509 0.92549 0.91813 0.91515 0.76907 0.84516 0.84625 0.84656 0.84418 0.72932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 7.50 37.16 0.28 -2.67 16 2 C 0.03 0.63 0.50 -155.66 -0.08 0.56 16 3 C -0.15 -2.89 7.66 37.16 0.28 -2.61 16 4 C -0.52 -13.89 8.61 -34.44 -0.30 -14.19 16 5 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 6 C 0.08 2.18 5.26 -17.82 -0.09 2.09 16 7 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 8 Si 0.87 20.61 22.90 -169.99 -3.89 16.71 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.24 -5.18 4.58 56.52 0.26 -4.92 16 12 C 0.14 2.92 4.50 -4.04 -0.02 2.91 16 13 N -0.71 -12.13 4.95 -61.22 -0.30 -12.43 16 14 C 0.54 9.56 7.66 -12.28 -0.09 9.47 16 15 O -0.52 -11.21 12.94 -18.83 -0.24 -11.45 16 16 C -0.08 -1.12 5.90 -104.62 -0.62 -1.73 16 17 C -0.09 -0.95 9.52 -39.23 -0.37 -1.32 16 18 C -0.10 -0.77 10.03 -39.54 -0.40 -1.17 16 19 C -0.11 -0.77 10.03 -39.55 -0.40 -1.17 16 20 C -0.08 -0.77 9.77 -39.21 -0.38 -1.16 16 21 C -0.06 -0.78 5.79 -104.65 -0.61 -1.38 16 22 C 0.52 7.88 6.47 34.66 0.22 8.10 16 23 O -0.47 -8.87 15.40 -27.27 -0.42 -9.29 16 24 O -0.52 -5.90 13.43 -40.50 -0.54 -6.45 16 25 H 0.02 0.36 7.10 -51.93 -0.37 -0.01 16 26 H 0.06 1.27 3.86 -51.93 -0.20 1.07 16 27 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.04 0.90 2.71 -51.93 -0.14 0.76 16 30 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.40 5.67 4.32 -40.82 -0.18 5.49 16 35 H 0.14 1.19 6.45 -52.49 -0.34 0.85 16 36 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 38 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.41 3.00 9.11 45.56 0.42 3.42 16 LS Contribution 315.02 15.07 4.75 4.75 Total: -1.00 -35.23 315.02 -6.27 -41.50 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -3.82 Total: 6.60 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.57 Total: -4.28 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.47 Total: -38.08 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.21 Total: -27.20 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -3.89 Total: 16.71 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.23 -6.27 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315939535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.762 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds