Wall clock time and date at job start Tue Mar 31 2020 06:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 C 1.50706 * 109.46908 * 240.00489 * 2 1 3 5 5 H 1.07999 * 119.99760 * 235.37723 * 4 2 1 6 6 C 1.37881 * 120.00039 * 55.38056 * 4 2 1 7 7 N 1.31508 * 119.99887 * 198.47984 * 6 4 2 8 8 Si 1.86797 * 119.99964 * 18.48211 * 6 4 2 9 9 H 1.48504 * 109.47441 * 84.47539 * 8 6 4 10 10 H 1.48501 * 109.47431 * 204.47801 * 8 6 4 11 11 H 1.48507 * 109.47480 * 324.47911 * 8 6 4 12 12 C 1.52998 * 109.47736 * 120.00294 * 2 1 3 13 13 N 1.46502 * 109.47092 * 300.00033 * 12 2 1 14 14 C 1.34774 * 120.00108 * 179.97438 * 13 12 2 15 15 O 1.21532 * 119.99759 * 359.97438 * 14 13 12 16 16 C 1.47953 * 119.99947 * 180.02562 * 14 13 12 17 17 C 1.39204 * 120.20083 * 353.63006 * 16 14 13 18 18 C 1.38223 * 120.00016 * 179.97438 * 17 16 14 19 19 C 1.38368 * 120.40876 * 0.02871 * 18 17 16 20 20 C 1.38206 * 120.40173 * 359.97368 * 19 18 17 21 21 C 1.39262 * 119.98990 * 0.02562 * 20 19 18 22 22 C 1.47832 * 120.19942 * 179.97438 * 21 20 19 23 23 O 1.21461 * 120.00037 * 126.24882 * 22 21 20 24 24 O 1.34704 * 120.00418 * 306.24509 * 22 21 20 25 25 H 1.08999 * 109.47183 * 308.29455 * 1 2 3 26 26 H 1.08993 * 109.47568 * 68.30039 * 1 2 3 27 27 H 1.09002 * 109.47185 * 188.30214 * 1 2 3 28 28 H 1.09000 * 109.47258 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47242 * 300.00546 * 3 2 1 30 30 H 1.09000 * 109.47015 * 60.00469 * 3 2 1 31 31 H 0.97004 * 119.99762 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47367 * 180.02562 * 12 2 1 33 33 H 1.08999 * 109.46785 * 59.99857 * 12 2 1 34 34 H 0.97006 * 119.99880 * 359.97438 * 13 12 2 35 35 H 1.07997 * 119.99424 * 0.25929 * 17 16 14 36 36 H 1.07994 * 119.79735 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.79947 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.00502 * 180.02562 * 20 19 18 39 39 H 0.96702 * 117.00645 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.7133 -1.5429 -1.1333 6 6 1.6224 -0.2973 -2.4806 7 7 1.7480 -1.1021 -3.5130 8 14 0.8890 1.4056 -2.7076 9 1 1.9816 2.3960 -2.8829 10 1 0.0169 1.4128 -3.9096 11 1 0.0852 1.7621 -1.5108 12 6 2.0401 -0.7213 1.2491 13 7 1.5518 -0.0307 2.4454 14 6 1.8771 -0.4915 3.6694 15 8 2.5751 -1.4801 3.7808 16 6 1.3835 0.2055 4.8775 17 6 0.6954 1.4098 4.7591 18 6 0.2356 2.0572 5.8905 19 6 0.4552 1.5162 7.1449 20 6 1.1364 0.3216 7.2820 21 6 1.6070 -0.3448 6.1533 22 6 2.3368 -1.6227 6.2945 23 8 1.9686 -2.6035 5.6799 24 8 3.4102 -1.6994 7.1048 25 1 -0.3633 0.6368 0.8065 26 1 -0.3634 0.3799 -0.9548 27 1 -0.3634 -1.0169 0.1484 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.4600 -0.8114 -4.3925 32 1 3.1301 -0.7208 1.2493 33 1 1.6768 -1.7489 1.2491 34 1 0.9944 0.7582 2.3565 35 1 0.5167 1.8358 3.7829 36 1 -0.2983 2.9911 5.7948 37 1 0.0919 2.0307 8.0224 38 1 1.3039 -0.0951 8.2642 39 1 3.8550 -2.5560 7.1644 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315939535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:03 Heat of formation + Delta-G solvation = -107.935823 kcal Electronic energy + Delta-G solvation = -23294.018826 eV Core-core repulsion = 19780.349323 eV Total energy + Delta-G solvation = -3513.669504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.85202 -40.57425 -39.33657 -38.33678 -36.98965 -35.14766 -33.63047 -32.47210 -32.16316 -28.00390 -27.84454 -27.03841 -25.71102 -24.49520 -22.54560 -21.51499 -20.96059 -19.42223 -18.86993 -18.18631 -17.92017 -17.15541 -17.06174 -16.45622 -16.43501 -16.04639 -15.69260 -15.33872 -14.93670 -14.80814 -14.78968 -14.36806 -14.22816 -14.01938 -13.72228 -13.62082 -13.00842 -12.97883 -12.55232 -12.46027 -12.38867 -12.19643 -11.97157 -11.76220 -11.66089 -11.17109 -10.94484 -10.59225 -10.37902 -10.24251 -10.11141 -9.94856 -8.32157 -6.31792 -0.43763 0.08996 1.32408 1.36546 1.39666 1.51546 1.81508 2.01613 2.18263 2.35619 2.76172 3.03412 3.58296 3.72050 4.03770 4.06456 4.13480 4.28405 4.30591 4.34875 4.39694 4.65504 4.77638 4.80690 4.82564 4.87709 4.91776 5.04587 5.12958 5.14730 5.24417 5.36392 5.36833 5.49990 5.59723 5.70061 5.77977 5.79205 6.28475 6.51239 6.70942 6.95885 7.18476 7.31745 8.85356 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.004158 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.174361 B = 6732.458319 C = 7574.226801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.029 3.971 3 C -0.144 4.144 4 C -0.526 4.526 5 H 0.022 0.978 6 C 0.019 3.981 7 N -0.943 5.943 8 Si 0.937 3.063 9 H -0.279 1.279 10 H -0.311 1.311 11 H -0.193 1.193 12 C 0.159 3.841 13 N -0.700 5.700 14 C 0.532 3.468 15 O -0.570 6.570 16 C -0.112 4.112 17 C -0.089 4.089 18 C -0.088 4.088 19 C -0.087 4.087 20 C -0.080 4.080 21 C -0.090 4.090 22 C 0.523 3.477 23 O -0.523 6.523 24 O -0.507 6.507 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.265 0.735 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.412 0.588 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.159 0.841 39 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.759 13.242 25.372 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 C -0.201 4.201 4 C -0.564 4.564 5 H 0.040 0.960 6 C -0.179 4.179 7 N -0.582 5.582 8 Si 0.764 3.236 9 H -0.207 1.207 10 H -0.240 1.240 11 H -0.117 1.117 12 C 0.035 3.965 13 N -0.353 5.353 14 C 0.320 3.680 15 O -0.450 6.450 16 C -0.115 4.115 17 C -0.108 4.108 18 C -0.105 4.105 19 C -0.104 4.104 20 C -0.098 4.098 21 C -0.092 4.092 22 C 0.366 3.634 23 O -0.412 6.412 24 O -0.321 6.321 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.251 0.749 35 H 0.173 0.827 36 H 0.195 0.805 37 H 0.197 0.803 38 H 0.177 0.823 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -5.573 12.591 25.048 28.583 hybrid contribution 0.515 -0.809 -1.289 1.606 sum -5.059 11.782 23.759 26.998 Atomic orbital electron populations 1.22290 0.95957 1.00547 1.01293 1.18642 0.93832 0.93445 0.91297 1.22244 1.00970 0.96340 1.00559 1.20973 1.28629 1.15851 0.90936 0.95987 1.25893 0.95432 1.01361 0.95231 1.70165 1.49395 1.37372 1.01252 0.86508 0.79132 0.79788 0.78126 1.20651 1.24028 1.11664 1.21062 0.97310 0.94870 0.83274 1.45877 1.52880 1.31887 1.04628 1.18944 0.80629 0.83906 0.84541 1.90826 1.39769 1.27336 1.87102 1.19880 1.03047 0.97848 0.90726 1.21637 0.95059 0.92039 1.02022 1.21861 0.96857 1.00744 0.91044 1.21860 0.95194 0.93726 0.99665 1.21580 0.96179 0.95007 0.97028 1.19147 1.01787 0.93449 0.94789 1.21142 0.78616 0.88856 0.74782 1.90920 1.67093 1.39597 1.43545 1.84526 1.41622 1.43834 1.62129 0.91212 0.93016 0.94608 0.93564 0.94164 0.90693 0.92609 0.93932 0.94753 0.74898 0.82743 0.80453 0.80331 0.82343 0.71216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 7.50 71.98 0.54 -4.98 16 2 C 0.03 1.25 0.50 -52.93 -0.03 1.23 16 3 C -0.14 -5.27 7.66 71.98 0.55 -4.72 16 4 C -0.53 -29.66 8.61 25.60 0.22 -29.44 16 5 H 0.02 1.42 7.99 -2.91 -0.02 1.40 16 6 C 0.02 1.07 5.26 84.66 0.45 1.51 16 7 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 8 Si 0.94 41.70 22.90 68.60 1.57 43.27 16 9 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.31 -14.28 7.11 99.48 0.71 -13.57 16 11 H -0.19 -7.07 4.58 99.48 0.46 -6.61 16 12 C 0.16 6.76 4.50 86.38 0.39 7.15 16 13 N -0.70 -23.23 4.95 -465.88 -2.31 -25.54 16 14 C 0.53 19.18 7.66 86.82 0.67 19.84 16 15 O -0.57 -26.15 12.94 19.30 0.25 -25.90 16 16 C -0.11 -2.95 5.90 -19.86 -0.12 -3.06 16 17 C -0.09 -1.43 9.52 22.50 0.21 -1.22 16 18 C -0.09 -0.78 10.03 22.30 0.22 -0.55 16 19 C -0.09 -0.72 10.03 22.29 0.22 -0.50 16 20 C -0.08 -1.19 9.77 22.51 0.22 -0.97 16 21 C -0.09 -2.27 5.79 -19.88 -0.12 -2.38 16 22 C 0.52 16.16 6.47 70.36 0.45 16.61 16 23 O -0.52 -21.17 15.40 27.64 0.43 -20.75 16 24 O -0.51 -11.68 13.43 -56.14 -0.75 -12.43 16 25 H 0.07 2.00 7.10 -2.39 -0.02 1.99 16 26 H 0.05 2.06 3.86 -2.39 -0.01 2.05 16 27 H 0.03 1.45 8.13 -2.39 -0.02 1.43 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.04 1.50 2.71 -2.38 -0.01 1.50 16 30 H 0.07 2.02 6.86 -2.39 -0.02 2.00 16 31 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.03 1.65 8.14 -2.39 -0.02 1.64 16 34 H 0.41 10.36 4.32 -92.70 -0.40 9.96 16 35 H 0.16 1.81 6.45 -2.91 -0.02 1.79 16 36 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 37 H 0.18 0.05 8.06 -2.91 -0.02 0.02 16 38 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 39 H 0.43 6.49 9.11 -74.06 -0.67 5.82 16 Total: -1.00 -86.63 315.02 3.16 -83.48 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -0.22 Total: 18.15 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 3.89 Total: -1.49 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.01 Total: -84.33 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -0.08 Total: -59.08 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.57 Total: 43.27 kcal Total: -86.63 3.16 -83.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315939535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.460 kcal (2) G-P(sol) polarization free energy of solvation -86.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds