Wall clock time and date at job start Tue Mar 31 2020 07:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47149 * 2 1 4 4 C 1.50692 * 109.47180 * 239.99949 * 2 1 3 5 5 H 1.08003 * 120.00541 * 240.00257 * 4 2 1 6 6 C 1.37878 * 120.00128 * 59.99966 * 4 2 1 7 7 N 1.31506 * 120.00022 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99929 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46987 * 90.00064 * 8 6 4 10 10 H 1.48503 * 109.46922 * 209.99627 * 8 6 4 11 11 H 1.48491 * 109.47119 * 329.99858 * 8 6 4 12 12 C 1.53006 * 109.47005 * 119.99854 * 2 1 3 13 13 N 1.46499 * 109.46924 * 299.99784 * 12 2 1 14 14 S 1.65598 * 119.99562 * 164.99948 * 13 12 2 15 15 O 1.42093 * 104.28083 * 308.93081 * 14 13 12 16 16 O 1.42103 * 104.27641 * 181.07286 * 14 13 12 17 17 C 1.81405 * 104.45028 * 65.00200 * 14 13 12 18 18 C 1.53002 * 109.47194 * 179.97438 * 17 14 13 19 19 H 1.09002 * 110.55002 * 61.42851 * 18 17 14 20 20 C 1.55227 * 110.77658 * 184.28795 * 18 17 14 21 21 C 1.54813 * 101.98357 * 155.50393 * 20 18 17 22 22 C 1.54098 * 104.30472 * 339.26359 * 21 20 18 23 23 O 1.43744 * 107.29564 * 357.90152 * 22 21 20 24 24 H 1.09000 * 109.47069 * 300.00500 * 1 2 3 25 25 H 1.08998 * 109.47143 * 59.99803 * 1 2 3 26 26 H 1.08998 * 109.47216 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46878 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46712 * 299.99740 * 3 2 1 29 29 H 1.08996 * 109.46848 * 59.99872 * 3 2 1 30 30 H 0.97007 * 120.00336 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46871 * 180.02562 * 12 2 1 32 32 H 1.08991 * 109.46834 * 60.00122 * 12 2 1 33 33 H 0.96996 * 120.00162 * 344.99926 * 13 12 2 34 34 H 1.09001 * 109.46780 * 59.99651 * 17 14 13 35 35 H 1.09000 * 109.47249 * 299.99964 * 17 14 13 36 36 H 1.08999 * 110.89081 * 37.37124 * 20 18 17 37 37 H 1.09003 * 111.02102 * 273.69638 * 20 18 17 38 38 H 1.09002 * 110.48794 * 220.51904 * 21 20 18 39 39 H 1.09002 * 110.48657 * 98.00326 * 21 20 18 40 40 H 1.08999 * 109.88182 * 117.33024 * 22 21 20 41 41 H 1.08997 * 109.87763 * 238.47782 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1618 -4.4118 10 1 2.4865 -0.1415 -5.1123 11 1 3.6293 -1.7584 -3.7121 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0305 2.4454 14 16 1.6256 -0.7780 3.9212 15 8 1.0210 -2.0453 3.7030 16 8 1.0523 0.1622 4.8194 17 6 3.4006 -0.9668 4.2446 18 6 3.6024 -1.6530 5.5972 19 1 3.1576 -2.6482 5.5915 20 6 5.1109 -1.7334 5.9542 21 6 5.0711 -1.8275 7.4989 22 6 3.6867 -1.2674 7.8789 23 8 3.0446 -0.8528 6.6615 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 0.7089 1.1614 -3.4844 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7488 1.2493 33 1 1.1851 0.8645 2.3729 34 1 3.8732 0.0153 4.2617 35 1 3.8507 -1.5730 3.4585 36 1 5.6349 -0.8333 5.6327 37 1 5.5682 -2.6234 5.5219 38 1 5.8622 -1.2201 7.9387 39 1 5.1643 -2.8648 7.8205 40 1 3.0941 -2.0423 8.3653 41 1 3.8028 -0.4134 8.5461 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316020906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:01 Heat of formation + Delta-G solvation = -150.833239 kcal Electronic energy + Delta-G solvation = -22349.887506 eV Core-core repulsion = 18969.801782 eV Total energy + Delta-G solvation = -3380.085724 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45320 -38.61553 -38.03035 -36.93992 -34.89107 -33.46749 -32.73099 -32.29717 -27.51560 -27.46127 -27.31708 -26.18349 -23.00655 -22.30062 -20.73508 -20.25296 -18.76889 -17.99741 -17.62427 -17.40885 -17.04278 -16.73261 -16.45266 -16.04787 -15.52251 -15.08605 -14.81282 -14.59504 -14.05672 -13.86532 -13.59928 -13.32422 -13.24758 -13.12817 -13.03017 -13.00572 -12.86872 -12.71020 -12.67771 -12.46885 -12.24851 -12.23622 -12.05607 -11.65736 -11.50989 -11.38714 -11.06470 -10.76459 -10.63847 -10.36759 -10.11555 -7.95763 -6.12391 -0.67232 1.46955 1.49941 1.57187 1.86930 2.50233 2.65790 2.84005 3.28026 3.29899 3.44275 3.69879 3.88010 3.99912 4.10063 4.26954 4.31500 4.37450 4.57927 4.64072 4.77811 4.81044 4.83857 4.86426 4.95166 5.07143 5.12693 5.14201 5.19953 5.26399 5.30619 5.55016 5.72295 5.73525 5.79213 6.12706 6.21347 6.31471 6.49031 6.95364 7.55654 9.03146 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029944 B = 0.003856 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.857657 B = 7260.210234 C = 7705.329896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.051 3.949 3 C -0.124 4.124 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.022 3.978 7 N -0.905 5.905 8 Si 0.947 3.053 9 H -0.284 1.284 10 H -0.289 1.289 11 H -0.266 1.266 12 C 0.131 3.869 13 N -1.114 6.114 14 S 2.614 3.386 15 O -0.999 6.999 16 O -0.987 6.987 17 C -0.606 4.606 18 C 0.065 3.935 19 H 0.090 0.910 20 C -0.136 4.136 21 C -0.152 4.152 22 C 0.031 3.969 23 O -0.405 6.405 24 H 0.025 0.975 25 H 0.058 0.942 26 H 0.016 0.984 27 H 0.033 0.967 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.257 0.743 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.416 0.584 34 H 0.161 0.839 35 H 0.174 0.826 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.133 -4.101 17.193 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 C -0.182 4.182 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.178 4.178 7 N -0.544 5.544 8 Si 0.774 3.226 9 H -0.211 1.211 10 H -0.215 1.215 11 H -0.190 1.190 12 C 0.006 3.994 13 N -0.875 5.875 14 S 2.710 3.290 15 O -0.989 6.989 16 O -0.978 6.978 17 C -0.738 4.738 18 C 0.006 3.994 19 H 0.107 0.893 20 C -0.175 4.175 21 C -0.190 4.190 22 C -0.045 4.045 23 O -0.325 6.325 24 H 0.044 0.956 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.252 0.748 34 H 0.179 0.821 35 H 0.192 0.808 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.192 -4.264 17.561 20.747 hybrid contribution 0.363 0.062 -1.331 1.381 sum 10.555 -4.202 16.230 19.811 Atomic orbital electron populations 1.21718 0.98636 0.98338 0.99681 1.18320 0.92309 0.93329 0.91104 1.21688 0.98666 0.97897 0.99904 1.21388 1.31433 1.12192 0.91171 0.92283 1.25551 0.95301 0.95581 1.01326 1.69957 1.37419 1.23696 1.23345 0.85734 0.78888 0.78221 0.79782 1.21066 1.21494 1.19034 1.21452 0.98333 0.95330 0.84325 1.55467 1.78920 1.30328 1.22748 1.04553 0.78900 0.73222 0.72294 1.93528 1.75115 1.45202 1.85099 1.93533 1.76940 1.62873 1.64421 1.30466 1.24985 1.13158 1.05217 1.23081 0.97281 0.94024 0.85006 0.89266 1.23205 0.93028 1.05098 0.96168 1.22988 0.97083 1.03523 0.95364 1.23473 0.93464 1.00901 0.86647 1.89003 1.64480 1.61278 1.17729 0.95590 0.92284 0.96526 0.94752 0.92551 0.95009 0.93360 0.90496 0.92404 0.74815 0.82096 0.80825 0.89274 0.87582 0.88634 0.88832 0.91420 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.08 71.98 0.58 -5.43 16 2 C 0.05 2.32 0.51 -52.93 -0.03 2.29 16 3 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 4 C -0.52 -26.38 8.01 25.60 0.21 -26.17 16 5 H 0.06 2.88 7.74 -2.91 -0.02 2.86 16 6 C 0.02 1.12 5.15 84.66 0.44 1.55 16 7 N -0.91 -48.87 9.35 21.45 0.20 -48.67 16 8 Si 0.95 41.56 29.54 68.60 2.03 43.58 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 12 C 0.13 4.86 4.96 86.38 0.43 5.29 16 13 N -1.11 -37.00 5.22 -187.49 -0.98 -37.98 16 14 S 2.61 82.64 5.29 -56.49 -0.30 82.34 16 15 O -1.00 -38.41 17.50 -127.65 -2.23 -40.64 16 16 O -0.99 -37.31 17.53 -124.72 -2.19 -39.50 16 17 C -0.61 -12.51 5.88 71.98 0.42 -12.09 16 18 C 0.07 1.32 3.37 31.36 0.11 1.42 16 19 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 20 C -0.14 -1.76 6.61 31.98 0.21 -1.55 16 21 C -0.15 -1.66 7.00 31.58 0.22 -1.44 16 22 C 0.03 0.52 7.70 72.35 0.56 1.07 16 23 O -0.40 -10.18 10.45 -146.55 -1.53 -11.71 16 24 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 25 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 2.80 6.07 -2.38 -0.01 2.79 16 29 H 0.03 1.20 6.60 -2.39 -0.02 1.18 16 30 H 0.26 13.45 8.31 -92.70 -0.77 12.68 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.06 2.24 7.69 -2.39 -0.02 2.22 16 33 H 0.42 13.74 6.44 -96.75 -0.62 13.12 16 34 H 0.16 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.17 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.09 1.06 8.06 -2.39 -0.02 1.04 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -69.44 335.29 -0.89 -70.33 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.39 Total: 22.09 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 3.72 Total: -39.84 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -0.78 Total: -86.65 kcal Atomic # 8 Polarization: -85.90 SS G_CDS: -5.95 Total: -91.85 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 82.64 SS G_CDS: -0.30 Total: 82.34 kcal Total: -69.44 -0.89 -70.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316020906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.504 kcal (2) G-P(sol) polarization free energy of solvation -69.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds