Wall clock time and date at job start Tue Mar 31 2020 06:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.54937 * 2 1 4 4 S 1.65605 * 119.99632 * 311.86797 * 3 2 1 5 5 O 1.42094 * 104.27416 * 186.25631 * 4 3 2 6 6 O 1.42102 * 104.27710 * 314.11741 * 4 3 2 7 7 C 1.81402 * 104.44686 * 70.18805 * 4 3 2 8 8 C 1.53001 * 109.46777 * 171.15484 * 7 4 3 9 9 C 1.53001 * 109.46852 * 179.97438 * 8 7 4 10 10 C 1.50700 * 109.46921 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00231 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99936 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00097 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99987 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46899 * 89.99791 * 14 12 10 16 16 H 1.48499 * 109.47150 * 209.99630 * 14 12 10 17 17 H 1.48500 * 109.47255 * 329.99941 * 14 12 10 18 18 C 1.53208 * 109.61154 * 239.78024 * 2 1 3 19 19 C 1.53093 * 109.14883 * 183.11970 * 18 2 1 20 20 O 1.42898 * 109.42988 * 57.60374 * 19 18 2 21 21 C 1.42911 * 114.09436 * 298.83870 * 20 19 18 22 22 C 1.53091 * 109.41441 * 61.15512 * 21 20 19 23 23 H 1.09004 * 109.47096 * 309.62689 * 1 2 3 24 24 H 1.09002 * 109.47243 * 69.61914 * 1 2 3 25 25 H 1.08993 * 109.47451 * 189.62583 * 1 2 3 26 26 H 0.96996 * 119.99947 * 131.86653 * 3 2 1 27 27 H 1.09000 * 109.47163 * 291.14748 * 7 4 3 28 28 H 1.08996 * 109.47352 * 51.15529 * 7 4 3 29 29 H 1.08997 * 109.47324 * 299.99896 * 8 7 4 30 30 H 1.08998 * 109.47548 * 60.00250 * 8 7 4 31 31 H 1.08997 * 109.47368 * 300.00232 * 9 8 7 32 32 H 1.09005 * 109.47157 * 60.00163 * 9 8 7 33 33 H 0.96996 * 120.00312 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.53428 * 63.21018 * 18 2 1 35 35 H 1.09001 * 109.52026 * 303.01172 * 18 2 1 36 36 H 1.08998 * 109.47831 * 297.61015 * 19 18 2 37 37 H 1.09003 * 109.48035 * 177.59538 * 19 18 2 38 38 H 1.08999 * 109.47753 * 181.13976 * 21 20 19 39 39 H 1.08995 * 109.47853 * 301.16101 * 21 20 19 40 40 H 1.09004 * 109.52187 * 62.29947 * 22 21 20 41 41 H 1.09003 * 109.51919 * 182.42067 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0202 1.3805 0.0000 4 16 1.3952 2.4810 -1.0681 5 8 2.1954 3.6408 -0.8845 6 8 1.3774 1.7922 -2.3108 7 6 -0.2952 2.7742 -0.4786 8 6 -0.9103 3.9411 -1.2536 9 6 -2.3363 4.1880 -0.7569 10 6 -2.9419 5.3378 -1.5199 11 1 -2.3672 5.8423 -2.2824 12 6 -4.2295 5.7464 -1.2436 13 7 -4.9293 5.1324 -0.3147 14 14 -4.9801 7.1721 -2.1888 15 1 -5.6685 6.6558 -3.3991 16 1 -5.9604 7.8775 -1.3248 17 1 -3.9080 8.1164 -2.5942 18 6 2.0442 -0.7264 -1.2471 19 6 3.5731 -0.7885 -1.1974 20 8 3.9833 -1.4479 0.0022 21 6 3.5713 -0.7878 1.2009 22 6 2.0423 -0.7257 1.2478 23 1 -0.3633 0.6555 0.7916 24 1 -0.3634 0.3579 -0.9633 25 1 -0.3634 -1.0131 0.1718 26 1 2.7108 1.6500 0.6256 27 1 -0.8951 1.8777 -0.6351 28 1 -0.2727 3.0155 0.5841 29 1 -0.3104 4.8376 -1.0973 30 1 -0.9329 3.6999 -2.3163 31 1 -2.9359 3.2914 -0.9136 32 1 -2.3141 4.4291 0.3059 33 1 -5.8352 5.4196 -0.1206 34 1 1.7304 -0.1850 -2.1396 35 1 1.6392 -1.7381 -1.2723 36 1 3.9786 0.2230 -1.2131 37 1 3.9426 -1.3417 -2.0609 38 1 3.9394 -1.3406 2.0651 39 1 3.9770 0.2237 1.2166 40 1 1.6373 -1.7373 1.2731 41 1 1.7270 -0.1847 2.1401 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331276592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:12 Heat of formation + Delta-G solvation = -133.267682 kcal Electronic energy + Delta-G solvation = -22551.385036 eV Core-core repulsion = 19172.061012 eV Total energy + Delta-G solvation = -3379.324024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.15095 -37.05064 -36.24663 -35.77050 -34.74043 -32.27459 -31.38280 -31.13315 -29.06763 -27.54852 -23.97841 -23.85077 -23.05676 -20.80406 -20.19572 -19.02114 -17.68462 -16.79551 -16.41734 -16.23916 -16.20000 -15.67196 -15.25219 -14.79730 -14.55505 -14.42870 -14.30155 -13.38879 -13.07327 -12.87332 -12.63471 -12.45571 -12.31589 -12.10272 -11.91989 -11.87523 -11.72242 -11.55717 -11.41957 -11.27759 -10.96592 -10.90029 -10.80243 -10.44437 -10.40986 -9.98344 -9.91308 -9.57640 -9.34709 -9.10406 -8.42866 -6.07903 -4.10951 0.44422 2.77440 3.28932 3.35172 3.39273 3.67817 3.89497 4.26632 4.32755 4.40880 4.45758 4.52949 4.76402 4.87547 4.94942 5.10032 5.17041 5.19485 5.28604 5.32928 5.37060 5.45661 5.51326 5.56443 5.66034 5.77032 5.83402 5.95643 6.02292 6.18027 6.25500 6.43266 6.83152 6.87073 6.98798 7.54272 7.64138 7.90060 8.30658 8.95272 9.53923 11.03294 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.035561 B = 0.003585 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.194843 B = 7809.245095 C = 8117.965315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.182 3.818 3 N -1.118 6.118 4 S 2.599 3.401 5 O -0.964 6.964 6 O -0.960 6.960 7 C -0.621 4.621 8 C -0.106 4.106 9 C 0.031 3.969 10 C -0.527 4.527 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.184 4.184 19 C 0.064 3.936 20 O -0.385 6.385 21 C 0.059 3.941 22 C -0.152 4.152 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.413 0.587 27 H 0.138 0.862 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.261 0.739 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.642 -14.106 4.041 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.094 3.906 3 N -0.875 5.875 4 S 2.695 3.305 5 O -0.955 6.955 6 O -0.950 6.950 7 C -0.753 4.753 8 C -0.145 4.145 9 C -0.007 4.007 10 C -0.565 4.565 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.223 4.223 19 C -0.012 4.012 20 O -0.303 6.303 21 C -0.018 4.018 22 C -0.191 4.191 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.247 0.753 27 H 0.156 0.844 28 H 0.147 0.853 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.937 -13.975 3.258 20.713 hybrid contribution -0.998 1.010 0.404 1.476 sum 13.939 -12.965 3.662 19.385 Atomic orbital electron populations 1.22876 0.93835 1.05016 1.03636 1.20085 0.93635 0.80890 0.96018 1.55930 1.53814 1.21103 1.56690 1.05352 0.77695 0.72955 0.74480 1.93575 1.66727 1.49163 1.86009 1.93506 1.87324 1.72753 1.41439 1.31062 1.21571 1.10541 1.12103 1.21503 1.01588 0.93253 0.98165 1.19056 0.87836 0.97102 0.96721 1.21257 0.98825 1.16038 1.20375 0.92383 1.25017 0.97172 0.96930 0.95219 1.69951 1.10577 1.41280 1.31628 0.86558 0.79090 0.82419 0.79767 1.20555 1.21165 1.19729 1.23037 0.97089 1.02216 0.99963 1.22527 0.93967 0.97571 0.87177 1.87917 1.77149 1.51424 1.13851 1.22560 0.93471 0.97642 0.88095 1.22459 0.97189 1.01888 0.97584 0.90209 0.90737 0.89785 0.75325 0.84372 0.85340 0.91500 0.91852 0.96141 0.96147 0.92892 0.86751 0.90152 0.93053 0.88763 0.88733 0.93158 0.89507 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.81 6.69 37.16 0.25 -1.57 16 2 C 0.18 1.72 0.71 -131.62 -0.09 1.63 16 3 N -1.12 -11.64 4.69 0.70 0.00 -11.64 16 4 S 2.60 37.03 5.01 -107.50 -0.54 36.49 16 5 O -0.96 -16.91 18.08 -57.54 -1.04 -17.95 16 6 O -0.96 -15.48 14.80 -57.54 -0.85 -16.33 16 7 C -0.62 -9.28 4.58 37.16 0.17 -9.11 16 8 C -0.11 -2.11 5.16 -26.73 -0.14 -2.25 16 9 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 10 C -0.53 -14.73 9.11 -34.44 -0.31 -15.05 16 11 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 14 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 18 C -0.18 -1.90 4.84 -26.58 -0.13 -2.03 16 19 C 0.06 0.66 6.68 37.21 0.25 0.91 16 20 O -0.38 -4.04 10.77 -35.23 -0.38 -4.42 16 21 C 0.06 0.47 6.67 37.20 0.25 0.72 16 22 C -0.15 -1.13 5.00 -26.59 -0.13 -1.27 16 23 H 0.08 0.70 7.00 -51.93 -0.36 0.33 16 24 H 0.07 0.77 5.79 -51.93 -0.30 0.47 16 25 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 26 H 0.41 3.58 7.31 -34.48 -0.25 3.33 16 27 H 0.14 1.86 4.80 -51.92 -0.25 1.61 16 28 H 0.13 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.11 1.40 5.48 -51.93 -0.28 1.11 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.55 7.75 -51.93 -0.40 0.15 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.38 6.87 -51.93 -0.36 0.02 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -34.12 327.94 -8.68 -42.80 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.40 Total: 1.10 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: -0.13 Total: -25.82 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.74 Total: -37.26 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -2.27 Total: -38.70 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 37.03 SS G_CDS: -0.54 Total: 36.49 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.12 -8.68 -42.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331276592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.472 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds