Wall clock time and date at job start Tue Mar 31 2020 06:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.54937 * 2 1 4 4 S 1.65605 * 119.99632 * 311.86797 * 3 2 1 5 5 O 1.42094 * 104.27416 * 186.25631 * 4 3 2 6 6 O 1.42102 * 104.27710 * 314.11741 * 4 3 2 7 7 C 1.81402 * 104.44686 * 70.18805 * 4 3 2 8 8 C 1.53001 * 109.46777 * 171.15484 * 7 4 3 9 9 C 1.53001 * 109.46852 * 179.97438 * 8 7 4 10 10 C 1.50700 * 109.46921 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00231 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99936 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00097 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99987 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46899 * 89.99791 * 14 12 10 16 16 H 1.48499 * 109.47150 * 209.99630 * 14 12 10 17 17 H 1.48500 * 109.47255 * 329.99941 * 14 12 10 18 18 C 1.53208 * 109.61154 * 239.78024 * 2 1 3 19 19 C 1.53093 * 109.14883 * 183.11970 * 18 2 1 20 20 O 1.42898 * 109.42988 * 57.60374 * 19 18 2 21 21 C 1.42911 * 114.09436 * 298.83870 * 20 19 18 22 22 C 1.53091 * 109.41441 * 61.15512 * 21 20 19 23 23 H 1.09004 * 109.47096 * 309.62689 * 1 2 3 24 24 H 1.09002 * 109.47243 * 69.61914 * 1 2 3 25 25 H 1.08993 * 109.47451 * 189.62583 * 1 2 3 26 26 H 0.96996 * 119.99947 * 131.86653 * 3 2 1 27 27 H 1.09000 * 109.47163 * 291.14748 * 7 4 3 28 28 H 1.08996 * 109.47352 * 51.15529 * 7 4 3 29 29 H 1.08997 * 109.47324 * 299.99896 * 8 7 4 30 30 H 1.08998 * 109.47548 * 60.00250 * 8 7 4 31 31 H 1.08997 * 109.47368 * 300.00232 * 9 8 7 32 32 H 1.09005 * 109.47157 * 60.00163 * 9 8 7 33 33 H 0.96996 * 120.00312 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.53428 * 63.21018 * 18 2 1 35 35 H 1.09001 * 109.52026 * 303.01172 * 18 2 1 36 36 H 1.08998 * 109.47831 * 297.61015 * 19 18 2 37 37 H 1.09003 * 109.48035 * 177.59538 * 19 18 2 38 38 H 1.08999 * 109.47753 * 181.13976 * 21 20 19 39 39 H 1.08995 * 109.47853 * 301.16101 * 21 20 19 40 40 H 1.09004 * 109.52187 * 62.29947 * 22 21 20 41 41 H 1.09003 * 109.51919 * 182.42067 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0202 1.3805 0.0000 4 16 1.3952 2.4810 -1.0681 5 8 2.1954 3.6408 -0.8845 6 8 1.3774 1.7922 -2.3108 7 6 -0.2952 2.7742 -0.4786 8 6 -0.9103 3.9411 -1.2536 9 6 -2.3363 4.1880 -0.7569 10 6 -2.9419 5.3378 -1.5199 11 1 -2.3672 5.8423 -2.2824 12 6 -4.2295 5.7464 -1.2436 13 7 -4.9293 5.1324 -0.3147 14 14 -4.9801 7.1721 -2.1888 15 1 -5.6685 6.6558 -3.3991 16 1 -5.9604 7.8775 -1.3248 17 1 -3.9080 8.1164 -2.5942 18 6 2.0442 -0.7264 -1.2471 19 6 3.5731 -0.7885 -1.1974 20 8 3.9833 -1.4479 0.0022 21 6 3.5713 -0.7878 1.2009 22 6 2.0423 -0.7257 1.2478 23 1 -0.3633 0.6555 0.7916 24 1 -0.3634 0.3579 -0.9633 25 1 -0.3634 -1.0131 0.1718 26 1 2.7108 1.6500 0.6256 27 1 -0.8951 1.8777 -0.6351 28 1 -0.2727 3.0155 0.5841 29 1 -0.3104 4.8376 -1.0973 30 1 -0.9329 3.6999 -2.3163 31 1 -2.9359 3.2914 -0.9136 32 1 -2.3141 4.4291 0.3059 33 1 -5.8352 5.4196 -0.1206 34 1 1.7304 -0.1850 -2.1396 35 1 1.6392 -1.7381 -1.2723 36 1 3.9786 0.2230 -1.2131 37 1 3.9426 -1.3417 -2.0609 38 1 3.9394 -1.3406 2.0651 39 1 3.9770 0.2237 1.2166 40 1 1.6373 -1.7373 1.2731 41 1 1.7270 -0.1847 2.1401 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331276592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:12 Heat of formation + Delta-G solvation = -158.682216 kcal Electronic energy + Delta-G solvation = -22552.487093 eV Core-core repulsion = 19172.061012 eV Total energy + Delta-G solvation = -3380.426081 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.89412 -38.25291 -37.17375 -36.96726 -36.47918 -34.21806 -32.06035 -32.00101 -30.22260 -28.98587 -25.64110 -24.60498 -23.97269 -22.33533 -21.21915 -20.07897 -18.72683 -18.60497 -17.52982 -17.35007 -16.94766 -16.81700 -16.48228 -16.21700 -15.71717 -15.58041 -15.25152 -14.55150 -14.25820 -14.15673 -13.86198 -13.57409 -13.42250 -13.22147 -13.18231 -13.08537 -12.90451 -12.82983 -12.69472 -12.60341 -12.37648 -12.17419 -12.11685 -11.75534 -11.67985 -11.36030 -11.19139 -11.06521 -10.65825 -10.57759 -10.24526 -8.23270 -6.34062 -0.73649 1.39979 1.40380 1.51824 1.74237 2.39332 2.73806 2.99435 3.10373 3.19755 3.54457 3.72400 3.74343 3.81496 3.93641 4.09203 4.17167 4.31112 4.38860 4.45669 4.60389 4.65971 4.73305 4.76143 4.80659 4.88544 4.94513 4.98003 5.05735 5.16447 5.22359 5.26905 5.40328 5.45020 5.62791 5.79001 6.07727 6.19527 6.28514 6.81389 7.35278 8.88095 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.035561 B = 0.003585 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.194843 B = 7809.245095 C = 8117.965315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.178 3.822 3 N -1.102 6.102 4 S 2.624 3.376 5 O -0.997 6.997 6 O -0.979 6.979 7 C -0.622 4.622 8 C -0.106 4.106 9 C 0.032 3.968 10 C -0.554 4.554 11 H 0.059 0.941 12 C 0.004 3.996 13 N -0.929 5.929 14 Si 0.961 3.039 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.266 1.266 18 C -0.186 4.186 19 C 0.062 3.938 20 O -0.398 6.398 21 C 0.050 3.950 22 C -0.145 4.145 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.423 0.577 27 H 0.154 0.846 28 H 0.147 0.853 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.004 0.996 32 H 0.003 0.997 33 H 0.265 0.735 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.053 0.947 40 H 0.098 0.902 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.026 -14.749 4.663 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.090 3.910 3 N -0.863 5.863 4 S 2.720 3.280 5 O -0.987 6.987 6 O -0.969 6.969 7 C -0.752 4.752 8 C -0.145 4.145 9 C -0.006 4.006 10 C -0.592 4.592 11 H 0.077 0.923 12 C -0.194 4.194 13 N -0.568 5.568 14 Si 0.786 3.214 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.225 4.225 19 C -0.015 4.015 20 O -0.317 6.317 21 C -0.027 4.027 22 C -0.184 4.184 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.123 0.877 26 H 0.260 0.740 27 H 0.172 0.828 28 H 0.165 0.835 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.118 0.882 38 H 0.132 0.868 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.328 -14.610 3.882 21.528 hybrid contribution -1.086 1.128 0.247 1.586 sum 14.242 -13.482 4.129 20.041 Atomic orbital electron populations 1.22959 0.93599 1.06522 1.03093 1.20276 0.93896 0.79970 0.96875 1.55567 1.53590 1.20915 1.56276 1.04395 0.76823 0.72486 0.74329 1.93528 1.67440 1.51205 1.86562 1.93492 1.87377 1.72995 1.42991 1.31071 1.22410 1.09133 1.12586 1.21308 0.98947 0.95383 0.98851 1.18949 0.90577 0.95548 0.95519 1.21744 0.99500 1.17106 1.20806 0.92320 1.25908 0.97703 0.99657 0.96134 1.70059 1.11010 1.42814 1.32966 0.85501 0.78304 0.79088 0.78523 1.19696 1.20512 1.18992 1.23028 0.97214 1.02773 0.99522 1.22531 0.93945 0.97248 0.87745 1.87903 1.77458 1.51900 1.14435 1.22809 0.93985 0.98115 0.87770 1.22457 0.96677 1.02391 0.96919 0.89510 0.92163 0.87747 0.73995 0.82799 0.83452 0.91838 0.91808 0.97715 0.97829 0.92619 0.88813 0.88871 0.93957 0.88197 0.86807 0.92854 0.88371 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.35 6.69 71.98 0.48 -2.87 16 2 C 0.18 2.99 0.71 3.73 0.00 2.99 16 3 N -1.10 -21.15 4.69 -151.71 -0.71 -21.87 16 4 S 2.62 73.00 5.01 -56.49 -0.28 72.72 16 5 O -1.00 -34.53 18.08 -127.65 -2.31 -36.83 16 6 O -0.98 -31.31 14.80 -127.65 -1.89 -33.20 16 7 C -0.62 -18.12 4.58 71.98 0.33 -17.79 16 8 C -0.11 -4.25 5.16 30.60 0.16 -4.09 16 9 C 0.03 1.65 4.97 29.85 0.15 1.79 16 10 C -0.55 -31.34 9.11 25.60 0.23 -31.10 16 11 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 12 C 0.00 0.25 5.46 84.66 0.46 0.71 16 13 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 14 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 18 C -0.19 -3.60 4.84 30.69 0.15 -3.46 16 19 C 0.06 1.21 6.68 72.01 0.48 1.69 16 20 O -0.40 -7.61 10.77 -148.98 -1.60 -9.22 16 21 C 0.05 0.66 6.67 72.01 0.48 1.14 16 22 C -0.15 -1.71 5.00 30.68 0.15 -1.56 16 23 H 0.09 1.30 7.00 -2.38 -0.02 1.29 16 24 H 0.06 1.18 5.79 -2.39 -0.01 1.16 16 25 H 0.10 1.29 8.12 -2.39 -0.02 1.27 16 26 H 0.42 6.52 7.31 -96.75 -0.71 5.81 16 27 H 0.15 4.00 4.80 -2.39 -0.01 3.99 16 28 H 0.15 3.69 8.14 -2.39 -0.02 3.67 16 29 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 33 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.09 2.25 5.48 -2.39 -0.01 2.23 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 0.88 7.75 -2.39 -0.02 0.86 16 37 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 0.67 6.87 -2.39 -0.02 0.66 16 40 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -73.12 327.94 -1.09 -74.21 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.32 Total: 15.63 kcal Atomic # 6 Polarization: -55.62 SS G_CDS: 3.08 Total: -52.54 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -0.43 Total: -76.72 kcal Atomic # 8 Polarization: -73.45 SS G_CDS: -5.80 Total: -79.25 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 73.00 SS G_CDS: -0.28 Total: 72.72 kcal Total: -73.12 -1.09 -74.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331276592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.473 kcal (2) G-P(sol) polarization free energy of solvation -73.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds