Wall clock time and date at job start Tue Mar 31 2020 07:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47230 * 2 1 4 4 C 1.50697 * 109.47630 * 239.99514 * 2 1 3 5 5 H 1.07997 * 120.00322 * 240.00162 * 4 2 1 6 6 C 1.37880 * 119.99943 * 59.99850 * 4 2 1 7 7 N 1.31518 * 119.99809 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00266 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46941 * 59.99879 * 8 6 4 10 10 H 1.48495 * 109.47084 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46812 * 300.00133 * 8 6 4 12 12 C 1.53009 * 109.47064 * 119.99452 * 2 1 3 13 13 S 1.81397 * 109.47235 * 300.00294 * 12 2 1 14 14 O 1.42105 * 110.54275 * 68.37271 * 13 12 2 15 15 O 1.42101 * 110.54298 * 291.62373 * 13 12 2 16 16 N 1.65599 * 104.44825 * 179.97438 * 13 12 2 17 17 C 1.46497 * 120.00110 * 65.00280 * 16 13 12 18 18 C 1.52997 * 109.47242 * 164.99451 * 17 16 13 19 19 H 1.08991 * 109.82808 * 305.69990 * 18 17 16 20 20 C 1.54384 * 109.82868 * 184.81135 * 18 17 16 21 21 C 1.55456 * 102.18700 * 219.18444 * 20 18 17 22 22 C 1.54950 * 100.98569 * 34.04127 * 21 20 18 23 23 O 1.43241 * 109.82899 * 66.59190 * 18 17 16 24 24 H 1.08998 * 109.47786 * 300.00327 * 1 2 3 25 25 H 1.09005 * 109.47213 * 60.00504 * 1 2 3 26 26 H 1.09009 * 109.46944 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47448 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46897 * 299.99411 * 3 2 1 29 29 H 1.09001 * 109.47695 * 59.99437 * 3 2 1 30 30 H 0.97001 * 119.99986 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47149 * 180.02562 * 12 2 1 32 32 H 1.09000 * 109.46805 * 60.00171 * 12 2 1 33 33 H 0.96999 * 120.00046 * 244.99555 * 16 13 12 34 34 H 1.09002 * 109.47077 * 285.00304 * 17 16 13 35 35 H 1.09005 * 109.47050 * 44.99641 * 17 16 13 36 36 H 1.08995 * 110.84913 * 337.32413 * 20 18 17 37 37 H 1.09003 * 110.84304 * 100.94477 * 20 18 17 38 38 H 1.08992 * 111.05778 * 276.12668 * 21 20 18 39 39 H 1.08996 * 111.14319 * 151.99381 * 21 20 18 40 40 H 1.09000 * 110.30454 * 204.69060 * 22 21 20 41 41 H 1.09005 * 110.30842 * 82.52457 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 1.8260 -2.5204 -4.0075 10 1 1.8271 -0.4202 -5.2203 11 1 3.8066 -1.1211 -4.0079 12 6 2.0399 -0.7212 1.2494 13 16 1.4352 0.1340 2.7304 14 8 0.0278 -0.0182 2.8544 15 8 2.0478 1.4102 2.8544 16 7 2.0529 -0.7406 3.9937 17 6 3.5012 -0.7979 4.2061 18 6 3.7900 -1.3342 5.6096 19 1 3.2591 -0.7363 6.3503 20 6 5.3079 -1.2847 5.8870 21 6 5.5436 -2.6125 6.6604 22 6 4.5094 -3.5409 5.9752 23 8 3.3757 -2.7022 5.7018 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0278 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 0.7095 1.1616 -3.4845 31 1 3.1300 -0.7208 1.2496 32 1 1.6766 -1.7488 1.2494 33 1 1.4557 -1.2149 4.5931 34 1 3.9513 -1.4583 3.4649 35 1 3.9231 0.2022 4.1054 36 1 5.8725 -1.2736 4.9548 37 1 5.5613 -0.4237 6.5056 38 1 5.3221 -2.4928 7.7208 39 1 6.5594 -2.9789 6.5120 40 1 4.2268 -4.3524 6.6458 41 1 4.9168 -3.9409 5.0466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331319279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:45 Heat of formation + Delta-G solvation = -127.805129 kcal Electronic energy + Delta-G solvation = -22519.519509 eV Core-core repulsion = 19140.432359 eV Total energy + Delta-G solvation = -3379.087150 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.75931 -36.49539 -36.24137 -35.30433 -34.94282 -32.41427 -31.64294 -29.86498 -26.59158 -25.68689 -25.33102 -25.15212 -22.04134 -21.42446 -19.53589 -18.65700 -17.36421 -17.19418 -16.33099 -15.98471 -15.84586 -15.29124 -14.74254 -14.64820 -14.42925 -13.92507 -13.23884 -13.14535 -12.93645 -12.76255 -12.47339 -12.28560 -12.03502 -12.02473 -11.51426 -11.38446 -11.26221 -11.16565 -11.03631 -10.98012 -10.87166 -10.67044 -10.37871 -10.24559 -10.08572 -9.76842 -9.62688 -9.58816 -9.19337 -8.64569 -8.38049 -6.01433 -4.13408 0.92995 3.21858 3.27974 3.33444 3.35038 3.62409 4.16808 4.32741 4.39343 4.44803 4.56381 4.83595 4.86611 4.93519 5.05463 5.23724 5.33989 5.36345 5.42465 5.47873 5.55198 5.66061 5.72465 5.74576 5.90244 6.04084 6.41512 6.73336 6.78654 6.82670 6.93965 7.06102 7.24156 7.34408 7.53340 7.69560 8.00538 8.11928 8.35344 8.84770 9.51742 10.99835 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.004354 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.995493 B = 6429.117901 C = 7119.197114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.163 4.163 4 C -0.502 4.502 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.278 1.278 12 C -0.582 4.582 13 S 2.595 3.405 14 O -0.965 6.965 15 O -0.967 6.967 16 N -1.126 6.126 17 C 0.106 3.894 18 C 0.074 3.926 19 H 0.090 0.910 20 C -0.152 4.152 21 C -0.156 4.156 22 C 0.048 3.952 23 O -0.374 6.374 24 H 0.028 0.972 25 H 0.095 0.905 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.028 0.972 30 H 0.263 0.737 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.415 0.585 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.806 -5.896 16.292 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.716 4.716 13 S 2.693 3.307 14 O -0.955 6.955 15 O -0.957 6.957 16 N -0.883 5.883 17 C -0.021 4.021 18 C 0.015 3.985 19 H 0.107 0.893 20 C -0.190 4.190 21 C -0.194 4.194 22 C -0.029 4.029 23 O -0.294 6.294 24 H 0.047 0.953 25 H 0.113 0.887 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.248 0.752 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.089 -4.956 16.121 18.705 hybrid contribution 0.772 -1.252 -0.891 1.720 sum 8.861 -6.208 15.229 18.682 Atomic orbital electron populations 1.22270 0.96901 1.00643 1.02304 1.17928 0.92857 0.92200 0.89091 1.22269 0.99630 0.97822 1.02350 1.20907 1.31729 1.12057 0.89440 0.92407 1.24938 0.94906 0.94989 0.98898 1.69796 1.36290 1.22563 1.23544 0.86596 0.79101 0.79728 0.82180 1.20289 1.21190 1.20317 1.30518 1.11094 1.12959 1.16985 1.05546 0.74394 0.75179 0.75617 1.93552 1.29539 1.86699 1.85750 1.93529 1.78226 1.38302 1.85603 1.55721 1.13760 1.71043 1.47798 1.21689 0.81393 1.01827 0.97185 1.22972 0.94939 0.84094 0.96487 0.89253 1.23192 0.95229 0.98828 1.01736 1.23293 1.00420 0.95236 1.00448 1.23408 0.86328 0.93831 0.99288 1.88469 1.31701 1.16461 1.92720 0.95349 0.88670 0.94478 0.94548 0.88684 0.95296 0.92710 0.86630 0.86250 0.75164 0.91423 0.89314 0.89752 0.89469 0.90360 0.89792 0.89742 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 7.77 37.15 0.29 -3.81 16 2 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 3 C -0.16 -4.04 7.77 37.16 0.29 -3.75 16 4 C -0.50 -13.29 8.01 -34.44 -0.28 -13.57 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.06 1.73 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.29 9.35 55.43 0.52 -23.77 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C -0.58 -11.57 5.01 37.16 0.19 -11.38 16 13 S 2.59 49.13 4.49 -107.50 -0.48 48.64 16 14 O -0.97 -20.87 15.70 -57.54 -0.90 -21.77 16 15 O -0.97 -20.38 15.12 -57.54 -0.87 -21.25 16 16 N -1.13 -16.29 5.86 -10.61 -0.06 -16.35 16 17 C 0.11 1.28 5.67 -4.04 -0.02 1.26 16 18 C 0.07 0.74 3.60 -26.01 -0.09 0.65 16 19 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 20 C -0.15 -1.11 6.56 -24.70 -0.16 -1.27 16 21 C -0.16 -0.99 7.16 -24.40 -0.17 -1.17 16 22 C 0.05 0.39 7.78 38.19 0.30 0.69 16 23 O -0.37 -4.21 10.90 -35.23 -0.38 -4.59 16 24 H 0.03 0.68 5.46 -51.93 -0.28 0.39 16 25 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 26 H 0.04 0.89 8.14 -51.92 -0.42 0.46 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 29 H 0.03 0.68 5.46 -51.93 -0.28 0.40 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.12 2.06 8.14 -51.92 -0.42 1.63 16 32 H 0.12 2.20 8.14 -51.92 -0.42 1.78 16 33 H 0.41 5.53 8.54 -34.47 -0.29 5.24 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.04 7.70 -51.93 -0.40 0.64 16 36 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -32.38 330.05 -8.56 -40.95 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.49 Total: 6.26 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 0.16 Total: -28.80 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.46 Total: -40.13 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -2.16 Total: -47.62 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 49.13 SS G_CDS: -0.48 Total: 48.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.38 -8.56 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331319279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.859 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds