Wall clock time and date at job start Tue Mar 31 2020 07:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47230 * 2 1 4 4 C 1.50697 * 109.47630 * 239.99514 * 2 1 3 5 5 H 1.07997 * 120.00322 * 240.00162 * 4 2 1 6 6 C 1.37880 * 119.99943 * 59.99850 * 4 2 1 7 7 N 1.31518 * 119.99809 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00266 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46941 * 59.99879 * 8 6 4 10 10 H 1.48495 * 109.47084 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46812 * 300.00133 * 8 6 4 12 12 C 1.53009 * 109.47064 * 119.99452 * 2 1 3 13 13 S 1.81397 * 109.47235 * 300.00294 * 12 2 1 14 14 O 1.42105 * 110.54275 * 68.37271 * 13 12 2 15 15 O 1.42101 * 110.54298 * 291.62373 * 13 12 2 16 16 N 1.65599 * 104.44825 * 179.97438 * 13 12 2 17 17 C 1.46497 * 120.00110 * 65.00280 * 16 13 12 18 18 C 1.52997 * 109.47242 * 164.99451 * 17 16 13 19 19 H 1.08991 * 109.82808 * 305.69990 * 18 17 16 20 20 C 1.54384 * 109.82868 * 184.81135 * 18 17 16 21 21 C 1.55456 * 102.18700 * 219.18444 * 20 18 17 22 22 C 1.54950 * 100.98569 * 34.04127 * 21 20 18 23 23 O 1.43241 * 109.82899 * 66.59190 * 18 17 16 24 24 H 1.08998 * 109.47786 * 300.00327 * 1 2 3 25 25 H 1.09005 * 109.47213 * 60.00504 * 1 2 3 26 26 H 1.09009 * 109.46944 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47448 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46897 * 299.99411 * 3 2 1 29 29 H 1.09001 * 109.47695 * 59.99437 * 3 2 1 30 30 H 0.97001 * 119.99986 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47149 * 180.02562 * 12 2 1 32 32 H 1.09000 * 109.46805 * 60.00171 * 12 2 1 33 33 H 0.96999 * 120.00046 * 244.99555 * 16 13 12 34 34 H 1.09002 * 109.47077 * 285.00304 * 17 16 13 35 35 H 1.09005 * 109.47050 * 44.99641 * 17 16 13 36 36 H 1.08995 * 110.84913 * 337.32413 * 20 18 17 37 37 H 1.09003 * 110.84304 * 100.94477 * 20 18 17 38 38 H 1.08992 * 111.05778 * 276.12668 * 21 20 18 39 39 H 1.08996 * 111.14319 * 151.99381 * 21 20 18 40 40 H 1.09000 * 110.30454 * 204.69060 * 22 21 20 41 41 H 1.09005 * 110.30842 * 82.52457 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 1.8260 -2.5204 -4.0075 10 1 1.8271 -0.4202 -5.2203 11 1 3.8066 -1.1211 -4.0079 12 6 2.0399 -0.7212 1.2494 13 16 1.4352 0.1340 2.7304 14 8 0.0278 -0.0182 2.8544 15 8 2.0478 1.4102 2.8544 16 7 2.0529 -0.7406 3.9937 17 6 3.5012 -0.7979 4.2061 18 6 3.7900 -1.3342 5.6096 19 1 3.2591 -0.7363 6.3503 20 6 5.3079 -1.2847 5.8870 21 6 5.5436 -2.6125 6.6604 22 6 4.5094 -3.5409 5.9752 23 8 3.3757 -2.7022 5.7018 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0278 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 0.7095 1.1616 -3.4845 31 1 3.1300 -0.7208 1.2496 32 1 1.6766 -1.7488 1.2494 33 1 1.4557 -1.2149 4.5931 34 1 3.9513 -1.4583 3.4649 35 1 3.9231 0.2022 4.1054 36 1 5.8725 -1.2736 4.9548 37 1 5.5613 -0.4237 6.5056 38 1 5.3221 -2.4928 7.7208 39 1 6.5594 -2.9789 6.5120 40 1 4.2268 -4.3524 6.6458 41 1 4.9168 -3.9409 5.0466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331319279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:44 Heat of formation + Delta-G solvation = -151.156010 kcal Electronic energy + Delta-G solvation = -22520.532079 eV Core-core repulsion = 19140.432359 eV Total energy + Delta-G solvation = -3380.099720 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45877 -38.12523 -38.10198 -36.90179 -36.05869 -33.62766 -33.04035 -30.67015 -28.30856 -27.68433 -27.24755 -26.10594 -22.61086 -22.20853 -21.33734 -20.15758 -18.76762 -18.06256 -17.81887 -17.38068 -16.89891 -16.78669 -16.55066 -15.95538 -15.32336 -15.03692 -14.67108 -14.56939 -14.41859 -13.89672 -13.84745 -13.65516 -13.57920 -13.05123 -12.98074 -12.85713 -12.79241 -12.61995 -12.50072 -12.18826 -12.16139 -12.07810 -11.97791 -11.91533 -11.66744 -11.55993 -11.36415 -10.70659 -10.52359 -10.40525 -10.27721 -8.02259 -6.21054 -0.59124 1.45788 1.46203 1.53560 1.90445 2.44835 2.85567 2.91979 3.19733 3.31705 3.57838 3.76004 3.98169 4.02160 4.17394 4.20261 4.23849 4.41950 4.54154 4.61032 4.66351 4.84276 4.86976 4.87544 4.90042 4.98394 4.99408 5.06101 5.09870 5.10304 5.31564 5.38997 5.51535 5.64799 5.97892 6.05661 6.12071 6.16530 6.34734 6.83264 7.47097 8.97452 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.004354 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.995493 B = 6429.117901 C = 7119.197114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.068 3.932 3 C -0.158 4.158 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.271 1.271 12 C -0.585 4.585 13 S 2.615 3.385 14 O -0.995 6.995 15 O -0.989 6.989 16 N -1.112 6.112 17 C 0.093 3.907 18 C 0.073 3.927 19 H 0.090 0.910 20 C -0.150 4.150 21 C -0.148 4.148 22 C 0.037 3.963 23 O -0.399 6.399 24 H 0.032 0.968 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.261 0.739 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.422 0.578 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.582 -7.138 17.324 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.066 3.934 3 C -0.216 4.216 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.196 1.196 12 C -0.718 4.718 13 S 2.713 3.287 14 O -0.985 6.985 15 O -0.979 6.979 16 N -0.872 5.872 17 C -0.033 4.033 18 C 0.014 3.986 19 H 0.108 0.892 20 C -0.188 4.188 21 C -0.186 4.186 22 C -0.039 4.039 23 O -0.319 6.319 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.257 0.743 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.871 -6.207 17.154 20.742 hybrid contribution 0.232 -0.892 -1.147 1.472 sum 10.103 -7.099 16.007 20.216 Atomic orbital electron populations 1.22208 0.97864 1.00378 1.01333 1.17936 0.92286 0.92305 0.90885 1.22190 0.99882 0.98184 1.01362 1.21256 1.31743 1.12304 0.90416 0.91949 1.25683 0.95166 0.95655 1.01672 1.69941 1.37140 1.23671 1.23903 0.85660 0.78783 0.78655 0.78795 1.19838 1.21304 1.19585 1.30449 1.12540 1.13249 1.15566 1.04659 0.73453 0.74866 0.75758 1.93503 1.31665 1.87114 1.86246 1.93496 1.78460 1.39910 1.86005 1.55309 1.15238 1.70527 1.46174 1.22042 0.79503 1.02621 0.99159 1.23009 0.96929 0.83739 0.94958 0.89180 1.23235 0.93086 0.99999 1.02506 1.23285 1.00787 0.94059 1.00440 1.23623 0.86211 0.94150 0.99892 1.88442 1.33447 1.17156 1.92822 0.94936 0.90984 0.94317 0.93947 0.91090 0.94826 0.92921 0.84483 0.84845 0.74259 0.90329 0.88952 0.89206 0.88050 0.89738 0.88029 0.88823 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.11 7.77 71.98 0.56 -7.55 16 2 C 0.07 3.31 0.52 -52.93 -0.03 3.28 16 3 C -0.16 -7.87 7.77 71.98 0.56 -7.32 16 4 C -0.52 -27.12 8.01 25.60 0.21 -26.91 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 6 C 0.02 0.94 5.15 84.65 0.44 1.37 16 7 N -0.91 -50.55 9.35 21.45 0.20 -50.35 16 8 Si 0.96 42.19 29.54 68.60 2.03 44.22 16 9 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 12 C -0.59 -22.47 5.01 71.99 0.36 -22.11 16 13 S 2.62 96.52 4.49 -56.49 -0.25 96.27 16 14 O -0.99 -42.62 15.70 -127.65 -2.00 -44.62 16 15 O -0.99 -40.88 15.12 -127.65 -1.93 -42.81 16 16 N -1.11 -30.45 5.86 -187.49 -1.10 -31.55 16 17 C 0.09 2.05 5.67 86.38 0.49 2.54 16 18 C 0.07 1.31 3.60 31.06 0.11 1.42 16 19 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 20 C -0.15 -1.78 6.56 31.91 0.21 -1.57 16 21 C -0.15 -1.45 7.16 32.11 0.23 -1.22 16 22 C 0.04 0.52 7.78 72.65 0.57 1.09 16 23 O -0.40 -8.24 10.90 -148.98 -1.62 -9.87 16 24 H 0.03 1.57 5.46 -2.39 -0.01 1.56 16 25 H 0.07 3.96 6.07 -2.38 -0.01 3.95 16 26 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.04 1.97 8.14 -2.38 -0.02 1.96 16 28 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 29 H 0.03 1.59 5.46 -2.39 -0.01 1.58 16 30 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 32 H 0.13 4.70 8.14 -2.39 -0.02 4.68 16 33 H 0.42 10.66 8.54 -96.75 -0.83 9.83 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 1.98 7.70 -2.38 -0.02 1.97 16 36 H 0.09 0.97 7.85 -2.39 -0.02 0.95 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -68.44 330.05 -0.79 -69.23 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.20 Total: 26.44 kcal Atomic # 6 Polarization: -60.66 SS G_CDS: 3.70 Total: -56.96 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -0.90 Total: -81.90 kcal Atomic # 8 Polarization: -91.74 SS G_CDS: -5.56 Total: -97.30 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 96.52 SS G_CDS: -0.25 Total: 96.27 kcal Total: -68.44 -0.79 -69.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331319279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.925 kcal (2) G-P(sol) polarization free energy of solvation -68.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds