Wall clock time and date at job start Tue Mar 31 2020 07:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47141 * 2 1 4 4 C 1.50696 * 109.47109 * 239.99781 * 2 1 3 5 5 H 1.08005 * 120.00087 * 240.83231 * 4 2 1 6 6 C 1.37884 * 119.99826 * 60.83953 * 4 2 1 7 7 N 1.31517 * 119.99414 * 194.57823 * 6 4 2 8 8 Si 1.86791 * 120.00225 * 14.57265 * 6 4 2 9 9 H 1.48509 * 109.47127 * 84.45554 * 8 6 4 10 10 H 1.48497 * 109.47397 * 204.45615 * 8 6 4 11 11 H 1.48502 * 109.47096 * 324.45917 * 8 6 4 12 12 C 1.53001 * 109.46919 * 119.99644 * 2 1 3 13 13 S 1.81393 * 109.47599 * 300.00202 * 12 2 1 14 14 O 1.42097 * 110.54474 * 68.37328 * 13 12 2 15 15 O 1.42104 * 110.54068 * 291.62831 * 13 12 2 16 16 N 1.65595 * 104.45147 * 180.02562 * 13 12 2 17 17 C 1.46502 * 120.00264 * 65.00071 * 16 13 12 18 18 C 1.52997 * 109.47372 * 164.99992 * 17 16 13 19 19 H 1.09003 * 110.35451 * 57.85427 * 18 17 16 20 20 C 1.54938 * 110.31183 * 179.97438 * 18 17 16 21 21 C 1.55310 * 100.98356 * 155.33906 * 20 18 17 22 22 C 1.54441 * 102.22618 * 325.92129 * 21 20 18 23 23 O 1.43245 * 107.60535 * 21.29517 * 22 21 20 24 24 H 1.08998 * 109.47359 * 310.23003 * 1 2 3 25 25 H 1.09001 * 109.47338 * 70.23592 * 1 2 3 26 26 H 1.09000 * 109.47279 * 190.23143 * 1 2 3 27 27 H 1.08996 * 109.47579 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47046 * 300.00313 * 3 2 1 29 29 H 1.09004 * 109.47347 * 59.99801 * 3 2 1 30 30 H 0.97008 * 119.99250 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46732 * 179.97438 * 12 2 1 32 32 H 1.09002 * 109.46947 * 60.00907 * 12 2 1 33 33 H 0.97002 * 120.00243 * 244.99945 * 16 13 12 34 34 H 1.08995 * 109.46867 * 44.99556 * 17 16 13 35 35 H 1.09006 * 109.46737 * 284.99929 * 17 16 13 36 36 H 1.08999 * 111.12781 * 273.28264 * 20 18 17 37 37 H 1.09007 * 111.12171 * 37.40040 * 20 18 17 38 38 H 1.08994 * 110.84652 * 84.08016 * 21 20 18 39 39 H 1.08996 * 110.84920 * 207.69955 * 21 20 18 40 40 H 1.08993 * 109.79176 * 261.79552 * 22 21 20 41 41 H 1.09001 * 109.92334 * 140.87045 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6421 -1.5963 -1.1313 6 6 1.7135 -0.2294 -2.4827 7 7 1.8969 -0.9848 -3.5435 8 14 1.0211 1.4951 -2.6724 9 1 2.1370 2.4737 -2.7240 10 1 0.2327 1.5766 -3.9281 11 1 0.1433 1.8061 -1.5156 12 6 2.0399 -0.7212 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0479 1.4101 2.8543 16 7 2.0540 -0.7400 3.9936 17 6 3.5026 -0.7962 4.2055 18 6 3.7923 -1.3320 5.6089 19 1 3.3445 -2.3173 5.7386 20 6 5.3208 -1.4002 5.8536 21 6 5.3764 -1.3146 7.4034 22 6 4.1859 -0.3839 7.7225 23 8 3.2935 -0.4226 6.6026 24 1 -0.3634 0.6637 0.7845 25 1 -0.3634 0.3475 -0.9671 26 1 -0.3634 -1.0113 0.1825 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6730 -0.6462 -4.4245 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7489 1.2492 33 1 1.4574 -1.2146 4.5934 34 1 3.9236 0.2040 4.1043 35 1 3.9528 -1.4567 3.4643 36 1 5.7340 -2.3438 5.4972 37 1 5.8302 -0.5528 5.3948 38 1 5.2312 -2.2974 7.8516 39 1 6.3157 -0.8713 7.7339 40 1 4.5439 0.6342 7.8750 41 1 3.6712 -0.7329 8.6177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331319280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:47 Heat of formation + Delta-G solvation = -107.593130 kcal Electronic energy + Delta-G solvation = -22559.557640 eV Core-core repulsion = 19181.346948 eV Total energy + Delta-G solvation = -3378.210692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.73711 -36.70528 -36.63863 -35.45317 -35.10272 -32.43074 -31.93840 -29.95827 -27.39537 -26.35566 -25.32007 -24.97405 -21.98381 -21.60647 -19.86111 -18.77188 -17.46674 -17.21005 -16.50760 -16.10746 -15.85814 -15.47374 -15.16263 -14.96080 -14.53752 -13.96495 -13.42559 -13.21208 -13.14720 -12.91438 -12.80782 -12.50065 -12.38830 -12.07850 -11.94050 -11.62418 -11.53825 -11.50045 -11.17794 -11.05089 -11.03925 -10.94049 -10.74872 -10.15128 -10.04169 -10.00435 -9.76318 -9.38845 -8.98076 -8.72877 -8.46097 -6.18933 -4.16080 0.75650 3.08218 3.26594 3.36261 3.39920 3.53578 4.12534 4.20772 4.35167 4.41083 4.55286 4.69151 4.81598 4.89672 4.95358 5.11098 5.27661 5.32363 5.37312 5.40574 5.44553 5.52130 5.57762 5.65738 5.78236 5.93935 6.01331 6.22613 6.34234 6.46560 6.51536 6.72525 6.77840 6.89203 7.11284 7.15759 7.33235 7.63667 8.39384 8.83622 9.45361 10.93592 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032175 B = 0.004159 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.034153 B = 6730.115529 C = 7051.328477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.054 3.946 3 C -0.181 4.181 4 C -0.508 4.508 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.874 3.126 9 H -0.281 1.281 10 H -0.301 1.301 11 H -0.246 1.246 12 C -0.576 4.576 13 S 2.593 3.407 14 O -0.964 6.964 15 O -0.963 6.963 16 N -1.123 6.123 17 C 0.116 3.884 18 C 0.075 3.925 19 H 0.079 0.921 20 C -0.153 4.153 21 C -0.155 4.155 22 C 0.048 3.952 23 O -0.372 6.372 24 H 0.037 0.963 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.266 0.734 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.414 0.586 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 -2.218 19.783 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.051 3.949 3 C -0.238 4.238 4 C -0.546 4.546 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.526 5.526 8 Si 0.706 3.294 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.172 1.172 12 C -0.709 4.709 13 S 2.690 3.310 14 O -0.954 6.954 15 O -0.953 6.953 16 N -0.880 5.880 17 C -0.011 4.011 18 C 0.016 3.984 19 H 0.097 0.903 20 C -0.191 4.191 21 C -0.193 4.193 22 C -0.029 4.029 23 O -0.292 6.292 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.248 0.752 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.023 -1.246 19.566 20.510 hybrid contribution 0.129 -0.014 -0.254 0.285 sum 6.152 -1.259 19.312 20.308 Atomic orbital electron populations 1.22674 0.97000 1.01359 1.01743 1.18230 0.92544 0.91728 0.92390 1.22815 1.02317 0.97867 1.00811 1.20655 1.33884 1.12539 0.87547 0.90429 1.24967 0.94551 0.97311 0.95797 1.69943 1.47978 1.35767 0.98893 0.87436 0.79818 0.85659 0.76512 1.20819 1.22944 1.17152 1.30396 1.11709 1.13119 1.15713 1.05582 0.74452 0.75284 0.75685 1.93565 1.29399 1.86638 1.85803 1.93540 1.78121 1.38195 1.85474 1.55613 1.13832 1.71391 1.47177 1.21483 0.81185 1.02854 0.95573 1.23198 0.93417 0.93376 0.88422 0.90297 1.23309 0.95764 1.04040 0.95982 1.23125 0.99451 1.00708 0.96015 1.23152 0.90156 0.99780 0.89780 1.88516 1.47289 1.64688 1.28658 0.94395 0.91480 0.92339 0.91818 0.93050 0.93122 0.92438 0.85847 0.85456 0.75222 0.89512 0.90303 0.89334 0.89610 0.90487 0.89864 0.91257 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 6.95 37.16 0.26 -3.62 16 2 C 0.05 1.24 0.52 -155.66 -0.08 1.16 16 3 C -0.18 -4.09 7.22 37.16 0.27 -3.82 16 4 C -0.51 -13.63 8.62 -34.44 -0.30 -13.93 16 5 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 6 C 0.08 2.16 5.31 -17.82 -0.09 2.06 16 7 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16 8 Si 0.87 21.63 22.79 -169.99 -3.87 17.76 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 11 H -0.25 -5.72 4.67 56.52 0.26 -5.46 16 12 C -0.58 -10.48 4.99 37.16 0.19 -10.30 16 13 S 2.59 45.56 4.50 -107.50 -0.48 45.08 16 14 O -0.96 -19.33 15.93 -57.54 -0.92 -20.25 16 15 O -0.96 -19.29 15.11 -57.54 -0.87 -20.15 16 16 N -1.12 -14.95 5.84 -10.61 -0.06 -15.01 16 17 C 0.12 1.29 5.85 -4.04 -0.02 1.27 16 18 C 0.07 0.71 3.51 -25.71 -0.09 0.62 16 19 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 20 C -0.15 -1.06 6.57 -24.48 -0.16 -1.22 16 21 C -0.16 -0.96 7.03 -24.75 -0.17 -1.13 16 22 C 0.05 0.40 7.80 37.91 0.30 0.69 16 23 O -0.37 -4.36 11.00 -35.23 -0.39 -4.75 16 24 H 0.04 0.81 6.21 -51.93 -0.32 0.49 16 25 H 0.07 1.57 4.32 -51.93 -0.22 1.35 16 26 H 0.06 1.25 8.11 -51.93 -0.42 0.83 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.05 1.20 2.28 -51.93 -0.12 1.08 16 29 H 0.05 1.08 5.46 -51.93 -0.28 0.79 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 32 H 0.13 2.11 8.14 -51.92 -0.42 1.69 16 33 H 0.41 4.91 8.62 -34.47 -0.30 4.61 16 34 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.60 8.06 -51.93 -0.42 0.18 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 320.82 15.07 4.83 4.83 Total: -1.00 -34.35 320.82 -7.30 -41.65 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.40 Total: 4.75 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 0.09 Total: -28.22 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.71 Total: -40.69 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -2.17 Total: -45.15 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -3.87 Total: 17.76 kcal Atomic # 16 Polarization: 45.56 SS G_CDS: -0.48 Total: 45.08 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.35 -7.30 -41.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331319280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.938 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds