Wall clock time and date at job start Tue Mar 31 2020 07:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47141 * 2 1 4 4 C 1.50696 * 109.47109 * 239.99781 * 2 1 3 5 5 H 1.08005 * 120.00087 * 240.83231 * 4 2 1 6 6 C 1.37884 * 119.99826 * 60.83953 * 4 2 1 7 7 N 1.31517 * 119.99414 * 194.57823 * 6 4 2 8 8 Si 1.86791 * 120.00225 * 14.57265 * 6 4 2 9 9 H 1.48509 * 109.47127 * 84.45554 * 8 6 4 10 10 H 1.48497 * 109.47397 * 204.45615 * 8 6 4 11 11 H 1.48502 * 109.47096 * 324.45917 * 8 6 4 12 12 C 1.53001 * 109.46919 * 119.99644 * 2 1 3 13 13 S 1.81393 * 109.47599 * 300.00202 * 12 2 1 14 14 O 1.42097 * 110.54474 * 68.37328 * 13 12 2 15 15 O 1.42104 * 110.54068 * 291.62831 * 13 12 2 16 16 N 1.65595 * 104.45147 * 180.02562 * 13 12 2 17 17 C 1.46502 * 120.00264 * 65.00071 * 16 13 12 18 18 C 1.52997 * 109.47372 * 164.99992 * 17 16 13 19 19 H 1.09003 * 110.35451 * 57.85427 * 18 17 16 20 20 C 1.54938 * 110.31183 * 179.97438 * 18 17 16 21 21 C 1.55310 * 100.98356 * 155.33906 * 20 18 17 22 22 C 1.54441 * 102.22618 * 325.92129 * 21 20 18 23 23 O 1.43245 * 107.60535 * 21.29517 * 22 21 20 24 24 H 1.08998 * 109.47359 * 310.23003 * 1 2 3 25 25 H 1.09001 * 109.47338 * 70.23592 * 1 2 3 26 26 H 1.09000 * 109.47279 * 190.23143 * 1 2 3 27 27 H 1.08996 * 109.47579 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47046 * 300.00313 * 3 2 1 29 29 H 1.09004 * 109.47347 * 59.99801 * 3 2 1 30 30 H 0.97008 * 119.99250 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46732 * 179.97438 * 12 2 1 32 32 H 1.09002 * 109.46947 * 60.00907 * 12 2 1 33 33 H 0.97002 * 120.00243 * 244.99945 * 16 13 12 34 34 H 1.08995 * 109.46867 * 44.99556 * 17 16 13 35 35 H 1.09006 * 109.46737 * 284.99929 * 17 16 13 36 36 H 1.08999 * 111.12781 * 273.28264 * 20 18 17 37 37 H 1.09007 * 111.12171 * 37.40040 * 20 18 17 38 38 H 1.08994 * 110.84652 * 84.08016 * 21 20 18 39 39 H 1.08996 * 110.84920 * 207.69955 * 21 20 18 40 40 H 1.08993 * 109.79176 * 261.79552 * 22 21 20 41 41 H 1.09001 * 109.92334 * 140.87045 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6421 -1.5963 -1.1313 6 6 1.7135 -0.2294 -2.4827 7 7 1.8969 -0.9848 -3.5435 8 14 1.0211 1.4951 -2.6724 9 1 2.1370 2.4737 -2.7240 10 1 0.2327 1.5766 -3.9281 11 1 0.1433 1.8061 -1.5156 12 6 2.0399 -0.7212 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0479 1.4101 2.8543 16 7 2.0540 -0.7400 3.9936 17 6 3.5026 -0.7962 4.2055 18 6 3.7923 -1.3320 5.6089 19 1 3.3445 -2.3173 5.7386 20 6 5.3208 -1.4002 5.8536 21 6 5.3764 -1.3146 7.4034 22 6 4.1859 -0.3839 7.7225 23 8 3.2935 -0.4226 6.6026 24 1 -0.3634 0.6637 0.7845 25 1 -0.3634 0.3475 -0.9671 26 1 -0.3634 -1.0113 0.1825 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6730 -0.6462 -4.4245 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7489 1.2492 33 1 1.4574 -1.2146 4.5934 34 1 3.9236 0.2040 4.1043 35 1 3.9528 -1.4567 3.4643 36 1 5.7340 -2.3438 5.4972 37 1 5.8302 -0.5528 5.3948 38 1 5.2312 -2.2974 7.8516 39 1 6.3157 -0.8713 7.7339 40 1 4.5439 0.6342 7.8750 41 1 3.6712 -0.7329 8.6177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331319280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:46 Heat of formation + Delta-G solvation = -135.005985 kcal Electronic energy + Delta-G solvation = -22560.746351 eV Core-core repulsion = 19181.346948 eV Total energy + Delta-G solvation = -3379.399403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.40858 -38.49145 -38.12184 -36.92713 -36.12361 -34.03414 -33.04080 -30.71850 -28.96767 -28.14192 -27.08613 -26.05634 -22.53482 -22.34680 -21.58651 -20.17057 -18.83824 -18.12271 -17.91087 -17.62039 -17.06065 -16.84017 -16.58912 -16.02385 -15.45830 -15.11832 -14.98519 -14.78619 -14.58671 -14.20195 -14.14151 -13.96630 -13.53857 -13.37378 -13.19491 -13.02973 -12.72186 -12.65512 -12.61469 -12.57293 -12.17114 -11.99390 -11.90193 -11.84604 -11.77103 -11.65333 -10.97618 -10.67811 -10.55684 -10.45861 -10.27239 -8.34427 -6.33374 -0.64292 1.30504 1.36322 1.43428 1.86315 2.30223 2.80784 2.88272 3.00193 3.29770 3.57876 3.75267 3.79006 4.03446 4.08951 4.17160 4.21242 4.25988 4.37089 4.51278 4.58841 4.60414 4.64115 4.70770 4.77434 4.84174 4.90609 4.95982 4.98041 5.05521 5.10586 5.16468 5.30664 5.38985 5.53267 5.63721 6.07187 6.17888 6.27130 6.69545 7.31037 8.81269 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032175 B = 0.004159 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.034153 B = 6730.115529 C = 7051.328477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.044 3.956 3 C -0.187 4.187 4 C -0.502 4.502 5 H 0.053 0.947 6 C 0.027 3.973 7 N -0.935 5.935 8 Si 0.916 3.084 9 H -0.275 1.275 10 H -0.306 1.306 11 H -0.224 1.224 12 C -0.581 4.581 13 S 2.615 3.385 14 O -0.990 6.990 15 O -0.988 6.988 16 N -1.110 6.110 17 C 0.102 3.898 18 C 0.070 3.930 19 H 0.093 0.907 20 C -0.150 4.150 21 C -0.148 4.148 22 C 0.038 3.962 23 O -0.406 6.406 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.266 0.734 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.423 0.577 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.374 -2.351 21.750 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.041 3.959 3 C -0.243 4.243 4 C -0.540 4.540 5 H 0.071 0.929 6 C -0.172 4.172 7 N -0.574 5.574 8 Si 0.745 3.255 9 H -0.202 1.202 10 H -0.235 1.235 11 H -0.148 1.148 12 C -0.713 4.713 13 S 2.711 3.289 14 O -0.980 6.980 15 O -0.978 6.978 16 N -0.871 5.871 17 C -0.024 4.024 18 C 0.012 3.988 19 H 0.111 0.889 20 C -0.189 4.189 21 C -0.185 4.185 22 C -0.039 4.039 23 O -0.326 6.326 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.259 0.741 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.757 -1.374 21.554 22.630 hybrid contribution -0.041 -0.049 -0.768 0.770 sum 6.715 -1.423 20.786 21.890 Atomic orbital electron populations 1.22696 0.96942 1.02143 1.01514 1.18224 0.92705 0.92167 0.92804 1.22846 1.03058 0.97493 1.00946 1.20927 1.32378 1.11608 0.89111 0.92906 1.25646 0.95403 1.00362 0.95765 1.70055 1.50377 1.37527 0.99443 0.86734 0.79837 0.82003 0.76898 1.20225 1.23511 1.14818 1.30376 1.13208 1.13533 1.14169 1.04674 0.73543 0.74881 0.75782 1.93524 1.31263 1.86991 1.86257 1.93508 1.78433 1.39937 1.85897 1.55222 1.15219 1.70943 1.45707 1.21844 0.79516 1.03179 0.97834 1.23344 0.95250 0.93347 0.86901 0.88924 1.23344 0.93874 1.05064 0.96582 1.23123 0.99052 1.00905 0.95457 1.23340 0.90840 1.00454 0.89230 1.88474 1.48789 1.65462 1.29901 0.93268 0.92549 0.91639 0.90910 0.93900 0.91899 0.92507 0.83753 0.83946 0.74145 0.90676 0.87556 0.87293 0.89846 0.89253 0.88477 0.91463 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.73 6.95 71.98 0.50 -7.23 16 2 C 0.04 1.93 0.52 -52.93 -0.03 1.90 16 3 C -0.19 -8.07 7.22 71.98 0.52 -7.55 16 4 C -0.50 -26.79 8.62 25.60 0.22 -26.57 16 5 H 0.05 3.02 7.99 -2.91 -0.02 2.99 16 6 C 0.03 1.52 5.31 84.66 0.45 1.97 16 7 N -0.93 -56.58 13.96 21.45 0.30 -56.28 16 8 Si 0.92 44.10 22.79 68.60 1.56 45.66 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 10 H -0.31 -14.88 7.11 99.48 0.71 -14.18 16 11 H -0.22 -9.91 4.67 99.48 0.46 -9.45 16 12 C -0.58 -19.92 4.99 71.98 0.36 -19.56 16 13 S 2.61 86.80 4.50 -56.49 -0.25 86.55 16 14 O -0.99 -38.05 15.93 -127.65 -2.03 -40.09 16 15 O -0.99 -37.84 15.11 -127.65 -1.93 -39.77 16 16 N -1.11 -27.15 5.84 -187.49 -1.10 -28.24 16 17 C 0.10 2.03 5.85 86.38 0.51 2.54 16 18 C 0.07 1.16 3.51 31.26 0.11 1.27 16 19 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 20 C -0.15 -1.66 6.57 32.05 0.21 -1.45 16 21 C -0.15 -1.41 7.03 31.88 0.22 -1.18 16 22 C 0.04 0.56 7.80 72.47 0.56 1.13 16 23 O -0.41 -8.89 11.00 -148.98 -1.64 -10.53 16 24 H 0.05 2.03 6.21 -2.39 -0.01 2.02 16 25 H 0.06 2.56 4.32 -2.39 -0.01 2.55 16 26 H 0.06 2.72 8.11 -2.39 -0.02 2.70 16 27 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.04 1.91 2.28 -2.39 -0.01 1.91 16 29 H 0.06 2.55 5.46 -2.38 -0.01 2.54 16 30 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 31 H 0.14 4.27 8.14 -2.39 -0.02 4.25 16 32 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 33 H 0.42 9.13 8.62 -96.74 -0.83 8.30 16 34 H 0.07 1.68 7.69 -2.39 -0.02 1.67 16 35 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 0.96 8.06 -2.38 -0.02 0.94 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.46 320.82 -1.50 -74.96 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -0.04 Total: 22.48 kcal Atomic # 6 Polarization: -58.38 SS G_CDS: 3.64 Total: -54.74 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -0.80 Total: -84.52 kcal Atomic # 8 Polarization: -84.79 SS G_CDS: -5.60 Total: -90.39 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.56 Total: 45.66 kcal Atomic # 16 Polarization: 86.80 SS G_CDS: -0.25 Total: 86.55 kcal Total: -73.46 -1.50 -74.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331319280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.048 kcal (2) G-P(sol) polarization free energy of solvation -73.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds