Wall clock time and date at job start Tue Mar 31 2020 07:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47434 * 2 1 4 4 H 1.09001 * 109.40467 * 305.16512 * 3 2 1 5 5 C 1.54666 * 109.35205 * 185.55170 * 3 2 1 6 6 N 1.48187 * 110.49115 * 200.72317 * 5 3 2 7 7 S 1.65595 * 118.51688 * 138.65376 * 6 5 3 8 8 O 1.42093 * 104.27935 * 153.66322 * 7 6 5 9 9 O 1.42105 * 104.27413 * 25.80372 * 7 6 5 10 10 C 1.81401 * 104.44822 * 269.73791 * 7 6 5 11 11 C 1.52997 * 109.47149 * 179.97438 * 10 7 6 12 12 C 1.50697 * 109.47466 * 179.97438 * 11 10 7 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00362 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99850 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47052 * 89.99717 * 16 14 12 18 18 H 1.48495 * 109.47307 * 209.99656 * 16 14 12 19 19 H 1.48500 * 109.47143 * 330.00164 * 16 14 12 20 20 C 1.44467 * 122.96883 * 318.37722 * 6 5 3 21 21 C 1.54876 * 109.32447 * 89.21535 * 20 6 5 22 22 C 1.47689 * 109.67962 * 290.09535 * 21 20 6 23 23 O 1.40529 * 109.40586 * 65.00212 * 3 2 1 24 24 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46733 * 300.00163 * 1 2 3 26 26 H 1.08997 * 109.47161 * 59.99401 * 1 2 3 27 27 H 1.09008 * 109.46853 * 240.00477 * 2 1 3 28 28 H 1.08997 * 109.47161 * 120.00599 * 2 1 3 29 29 H 1.09002 * 109.43473 * 80.41306 * 5 3 2 30 30 H 1.08998 * 109.24128 * 320.91440 * 5 3 2 31 31 H 1.09002 * 109.47085 * 299.99812 * 10 7 6 32 32 H 1.09001 * 109.47417 * 59.99938 * 10 7 6 33 33 H 1.09002 * 109.47153 * 299.99990 * 11 10 7 34 34 H 1.08998 * 109.47533 * 59.99620 * 11 10 7 35 35 H 0.96994 * 119.99814 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.49122 * 209.16586 * 20 6 5 37 37 H 1.09001 * 109.49550 * 329.25864 * 20 6 5 38 38 H 1.08993 * 109.43710 * 50.16208 * 21 20 6 39 39 H 1.09003 * 109.43386 * 170.03509 * 21 20 6 40 40 H 1.08992 * 108.64504 * 181.88410 * 22 21 20 41 41 H 1.09002 * 108.64451 * 299.86328 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6025 1.9812 -0.8405 5 6 3.5802 1.4414 -0.1412 6 7 4.1463 2.7228 0.3420 7 16 5.5344 2.6838 1.2441 8 8 6.1355 3.9512 1.0174 9 8 6.1804 1.4839 0.8412 10 6 4.9564 2.5507 2.9584 11 6 6.1610 2.5048 3.9006 12 6 5.6810 2.3949 5.3248 13 1 4.6225 2.3608 5.5368 14 6 6.5929 2.3369 6.3573 15 7 6.1740 2.2405 7.6002 16 14 8.4237 2.3937 5.9906 17 1 8.8854 3.8052 5.9926 18 1 9.1606 1.6305 7.0296 19 1 8.6806 1.7909 4.6580 20 6 3.5451 4.0051 0.0567 21 6 2.5157 4.3460 1.1625 22 6 1.3473 3.4500 1.0476 23 8 1.6676 2.0694 1.2013 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8483 1.3027 -1.1886 30 1 3.9942 0.6219 0.4462 31 1 4.3375 3.4145 3.2013 32 1 4.3699 1.6393 3.0745 33 1 6.7796 1.6408 3.6577 34 1 6.7480 3.4159 3.7847 35 1 6.8156 2.2000 8.3265 36 1 4.3191 4.7721 0.0313 37 1 3.0413 3.9639 -0.9091 38 1 2.9780 4.2156 2.1409 39 1 2.1918 5.3806 1.0500 40 1 0.6201 3.7260 1.8111 41 1 0.8933 3.5934 0.0671 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331997656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:56 Heat of formation + Delta-G solvation = -123.981466 kcal Electronic energy + Delta-G solvation = -22994.628882 eV Core-core repulsion = 19615.707538 eV Total energy + Delta-G solvation = -3378.921344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.78850 -36.84187 -35.81541 -35.44185 -34.53716 -33.89736 -31.77176 -31.41630 -28.20878 -26.27020 -25.91226 -23.04704 -22.01159 -21.17886 -20.73977 -18.59342 -17.69339 -17.26939 -16.87199 -16.21655 -15.95829 -15.38366 -15.15775 -14.35422 -14.28023 -13.97318 -13.85425 -13.69524 -13.57425 -13.10399 -12.79583 -12.42840 -12.23144 -12.01935 -11.87974 -11.83218 -11.70096 -11.47792 -11.25321 -11.21962 -11.15348 -11.03886 -10.74858 -10.69838 -10.39310 -10.09400 -9.78089 -9.58451 -9.35155 -8.80939 -8.62973 -6.13081 -4.13776 0.69222 2.87602 3.28489 3.35718 3.40344 3.64411 4.19599 4.38703 4.39332 4.52042 4.64879 4.74325 4.83351 4.88416 5.05044 5.10926 5.17540 5.19419 5.26861 5.42112 5.47843 5.51381 5.56370 5.62735 5.64895 5.72686 5.75886 5.78714 5.95156 6.04949 6.07856 6.14142 6.39155 6.69163 6.88159 6.98501 7.24537 7.58719 8.41169 8.89170 9.46828 10.99433 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.005154 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.165379 B = 5431.245603 C = 5852.752230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.081 3.919 4 H 0.062 0.938 5 C 0.100 3.900 6 N -0.994 5.994 7 S 2.582 3.418 8 O -0.967 6.967 9 O -0.966 6.966 10 C -0.578 4.578 11 C -0.007 4.007 12 C -0.516 4.516 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.868 3.132 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.262 1.262 20 C 0.113 3.887 21 C -0.186 4.186 22 C 0.067 3.933 23 O -0.356 6.356 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.031 0.969 34 H 0.026 0.974 35 H 0.266 0.734 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 0.429 -18.148 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.020 3.980 4 H 0.080 0.920 5 C -0.026 4.026 6 N -0.829 5.829 7 S 2.681 3.319 8 O -0.957 6.957 9 O -0.956 6.956 10 C -0.711 4.711 11 C -0.046 4.046 12 C -0.555 4.555 13 H 0.096 0.904 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.694 3.306 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.187 1.187 20 C -0.014 4.014 21 C -0.225 4.225 22 C -0.010 4.010 23 O -0.274 6.274 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.935 0.369 -18.219 21.252 hybrid contribution 0.389 0.201 0.227 0.493 sum -10.546 0.570 -17.992 20.863 Atomic orbital electron populations 1.21695 0.95170 1.01684 1.02014 1.21699 0.96754 0.94703 1.03306 1.22504 0.93010 0.94625 0.87829 0.92001 1.22550 0.94444 0.84930 1.00628 1.57276 1.46057 1.10667 1.68927 1.05884 0.73827 0.74093 0.78082 1.93517 1.74261 1.42771 1.85147 1.93536 1.72676 1.48071 1.81359 1.30347 1.10769 1.11151 1.18815 1.19414 0.91143 0.97641 0.96433 1.20856 0.95546 1.51622 0.87507 0.90366 1.24979 0.98961 0.94215 0.94923 1.69884 1.34797 1.49964 0.98816 0.86942 0.85675 0.79005 0.78933 1.19692 1.20755 1.18660 1.21343 0.97141 0.84849 0.98047 1.22250 0.98331 1.00537 1.01386 1.21459 0.96231 0.81830 1.01451 1.87516 1.87106 1.21871 1.30925 0.92629 0.91886 0.93237 0.90539 0.90410 0.90875 0.88914 0.85760 0.85427 0.95087 0.95564 0.92432 0.88316 0.90536 0.90140 0.89243 0.89723 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.81 37.16 0.36 -0.82 16 2 C -0.13 -1.11 5.54 -26.74 -0.15 -1.26 16 3 C 0.08 0.80 2.32 -25.86 -0.06 0.74 16 4 H 0.06 0.51 7.20 -51.93 -0.37 0.14 16 5 C 0.10 1.17 5.78 -2.24 -0.01 1.16 16 6 N -0.99 -13.50 2.77 -112.51 -0.31 -13.82 16 7 S 2.58 46.34 5.31 -107.50 -0.57 45.77 16 8 O -0.97 -19.28 16.39 -57.54 -0.94 -20.22 16 9 O -0.97 -19.59 16.72 -57.54 -0.96 -20.55 16 10 C -0.58 -11.21 6.00 37.16 0.22 -10.99 16 11 C -0.01 -0.17 4.05 -27.89 -0.11 -0.28 16 12 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 13 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 14 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 16 Si 0.87 21.80 27.47 -169.99 -4.67 17.13 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 20 C 0.11 1.26 5.64 -4.14 -0.02 1.24 16 21 C -0.19 -1.91 6.03 -28.31 -0.17 -2.08 16 22 C 0.07 0.65 6.04 34.59 0.21 0.86 16 23 O -0.36 -4.23 9.38 -34.10 -0.32 -4.55 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.17 7.09 -51.93 -0.37 0.80 16 31 H 0.12 2.23 6.33 -51.92 -0.33 1.90 16 32 H 0.13 2.35 8.14 -51.92 -0.42 1.93 16 33 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 34 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 35 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.10 1.19 6.69 -51.93 -0.35 0.84 16 37 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.08 0.99 6.18 -51.93 -0.32 0.67 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.36 7.27 -51.93 -0.38 -0.02 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -34.54 331.97 -8.84 -43.38 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.68 Total: -1.02 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -0.16 Total: -24.48 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.46 Total: -40.47 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -2.22 Total: -45.32 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Atomic # 16 Polarization: 46.34 SS G_CDS: -0.57 Total: 45.77 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.54 -8.84 -43.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331997656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.600 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds