Wall clock time and date at job start Tue Mar 31 2020 07:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47434 * 2 1 4 4 H 1.09001 * 109.40467 * 305.16512 * 3 2 1 5 5 C 1.54666 * 109.35205 * 185.55170 * 3 2 1 6 6 N 1.48187 * 110.49115 * 200.72317 * 5 3 2 7 7 S 1.65595 * 118.51688 * 138.65376 * 6 5 3 8 8 O 1.42093 * 104.27935 * 153.66322 * 7 6 5 9 9 O 1.42105 * 104.27413 * 25.80372 * 7 6 5 10 10 C 1.81401 * 104.44822 * 269.73791 * 7 6 5 11 11 C 1.52997 * 109.47149 * 179.97438 * 10 7 6 12 12 C 1.50697 * 109.47466 * 179.97438 * 11 10 7 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00362 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99850 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47052 * 89.99717 * 16 14 12 18 18 H 1.48495 * 109.47307 * 209.99656 * 16 14 12 19 19 H 1.48500 * 109.47143 * 330.00164 * 16 14 12 20 20 C 1.44467 * 122.96883 * 318.37722 * 6 5 3 21 21 C 1.54876 * 109.32447 * 89.21535 * 20 6 5 22 22 C 1.47689 * 109.67962 * 290.09535 * 21 20 6 23 23 O 1.40529 * 109.40586 * 65.00212 * 3 2 1 24 24 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46733 * 300.00163 * 1 2 3 26 26 H 1.08997 * 109.47161 * 59.99401 * 1 2 3 27 27 H 1.09008 * 109.46853 * 240.00477 * 2 1 3 28 28 H 1.08997 * 109.47161 * 120.00599 * 2 1 3 29 29 H 1.09002 * 109.43473 * 80.41306 * 5 3 2 30 30 H 1.08998 * 109.24128 * 320.91440 * 5 3 2 31 31 H 1.09002 * 109.47085 * 299.99812 * 10 7 6 32 32 H 1.09001 * 109.47417 * 59.99938 * 10 7 6 33 33 H 1.09002 * 109.47153 * 299.99990 * 11 10 7 34 34 H 1.08998 * 109.47533 * 59.99620 * 11 10 7 35 35 H 0.96994 * 119.99814 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.49122 * 209.16586 * 20 6 5 37 37 H 1.09001 * 109.49550 * 329.25864 * 20 6 5 38 38 H 1.08993 * 109.43710 * 50.16208 * 21 20 6 39 39 H 1.09003 * 109.43386 * 170.03509 * 21 20 6 40 40 H 1.08992 * 108.64504 * 181.88410 * 22 21 20 41 41 H 1.09002 * 108.64451 * 299.86328 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6025 1.9812 -0.8405 5 6 3.5802 1.4414 -0.1412 6 7 4.1463 2.7228 0.3420 7 16 5.5344 2.6838 1.2441 8 8 6.1355 3.9512 1.0174 9 8 6.1804 1.4839 0.8412 10 6 4.9564 2.5507 2.9584 11 6 6.1610 2.5048 3.9006 12 6 5.6810 2.3949 5.3248 13 1 4.6225 2.3608 5.5368 14 6 6.5929 2.3369 6.3573 15 7 6.1740 2.2405 7.6002 16 14 8.4237 2.3937 5.9906 17 1 8.8854 3.8052 5.9926 18 1 9.1606 1.6305 7.0296 19 1 8.6806 1.7909 4.6580 20 6 3.5451 4.0051 0.0567 21 6 2.5157 4.3460 1.1625 22 6 1.3473 3.4500 1.0476 23 8 1.6676 2.0694 1.2013 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8483 1.3027 -1.1886 30 1 3.9942 0.6219 0.4462 31 1 4.3375 3.4145 3.2013 32 1 4.3699 1.6393 3.0745 33 1 6.7796 1.6408 3.6577 34 1 6.7480 3.4159 3.7847 35 1 6.8156 2.2000 8.3265 36 1 4.3191 4.7721 0.0313 37 1 3.0413 3.9639 -0.9091 38 1 2.9780 4.2156 2.1409 39 1 2.1918 5.3806 1.0500 40 1 0.6201 3.7260 1.8111 41 1 0.8933 3.5934 0.0671 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331997656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:56 Heat of formation + Delta-G solvation = -149.197088 kcal Electronic energy + Delta-G solvation = -22995.722313 eV Core-core repulsion = 19615.707538 eV Total energy + Delta-G solvation = -3380.014775 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61008 -38.33809 -37.15076 -36.60661 -35.93099 -35.28296 -33.50431 -32.52310 -29.05671 -27.93930 -27.05267 -23.95292 -23.27484 -22.38016 -21.76531 -19.95773 -19.36010 -18.53123 -18.17523 -17.22030 -17.19602 -16.59478 -16.40284 -16.33225 -15.36561 -15.14496 -14.86727 -14.79370 -14.61578 -14.50878 -13.94480 -13.81706 -13.50604 -13.33871 -13.26893 -13.09547 -12.99771 -12.85447 -12.73000 -12.55253 -12.25649 -12.09039 -11.89576 -11.86266 -11.70824 -11.51610 -11.42664 -11.25742 -10.86067 -10.49391 -9.88676 -8.38078 -6.44135 -0.74910 1.30244 1.31692 1.42517 1.62764 2.28081 2.73511 2.92210 2.95309 3.10748 3.58789 3.77871 3.84440 3.96097 3.99624 4.08780 4.19682 4.30404 4.39433 4.48645 4.52189 4.54414 4.67186 4.74570 4.77870 4.84739 4.96259 4.98449 5.03594 5.05912 5.17929 5.18366 5.29910 5.32608 5.45323 5.50112 5.72202 6.15750 6.52033 6.61344 7.20093 8.77821 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.005154 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.165379 B = 5431.245603 C = 5852.752230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.082 3.918 4 H 0.089 0.911 5 C 0.089 3.911 6 N -0.983 5.983 7 S 2.609 3.391 8 O -0.985 6.985 9 O -0.989 6.989 10 C -0.585 4.585 11 C -0.014 4.014 12 C -0.527 4.527 13 H 0.045 0.955 14 C 0.015 3.985 15 N -0.940 5.940 16 Si 0.926 3.074 17 H -0.258 1.258 18 H -0.271 1.271 19 H -0.251 1.251 20 C 0.104 3.896 21 C -0.186 4.186 22 C 0.060 3.940 23 O -0.383 6.383 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.270 0.730 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.052 0.948 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.225 0.881 -20.896 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C 0.022 3.978 4 H 0.107 0.893 5 C -0.036 4.036 6 N -0.821 5.821 7 S 2.705 3.295 8 O -0.975 6.975 9 O -0.979 6.979 10 C -0.716 4.716 11 C -0.053 4.053 12 C -0.566 4.566 13 H 0.063 0.937 14 C -0.184 4.184 15 N -0.580 5.580 16 Si 0.748 3.252 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.175 1.175 20 C -0.021 4.021 21 C -0.225 4.225 22 C -0.016 4.016 23 O -0.301 6.301 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.132 0.868 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.105 0.895 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.323 0.822 -20.946 23.825 hybrid contribution 0.360 0.064 1.042 1.104 sum -10.963 0.886 -19.904 22.741 Atomic orbital electron populations 1.21660 0.94453 1.02082 1.01993 1.21742 0.97345 0.94174 1.03350 1.22618 0.91578 0.95414 0.88158 0.89274 1.22880 0.95803 0.83320 1.01588 1.56993 1.45256 1.12546 1.67308 1.04864 0.74495 0.73030 0.77067 1.93487 1.75490 1.43533 1.85034 1.93500 1.74059 1.49099 1.81266 1.30377 1.09060 1.11773 1.20387 1.19355 0.93174 0.97594 0.95191 1.21139 0.94254 1.51167 0.90057 0.93651 1.25876 1.03994 0.93853 0.94650 1.70011 1.36652 1.51360 0.99934 0.86014 0.79784 0.79921 0.79467 1.18277 1.19614 1.17505 1.21647 0.97243 0.83140 1.00109 1.22294 0.98268 1.02427 0.99550 1.21608 0.96013 0.80724 1.03236 1.87511 1.87171 1.23110 1.32330 0.92099 0.93412 0.91667 0.88567 0.92380 0.88413 0.90426 0.84917 0.85257 0.95212 0.95136 0.92047 0.89173 0.86820 0.92886 0.86580 0.89512 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.81 71.98 0.71 -1.29 16 2 C -0.13 -2.00 5.54 30.59 0.17 -1.83 16 3 C 0.08 1.42 2.32 31.16 0.07 1.49 16 4 H 0.09 1.06 7.20 -2.39 -0.02 1.04 16 5 C 0.09 1.88 5.78 86.62 0.50 2.38 16 6 N -0.98 -24.84 2.77 -509.88 -1.41 -26.26 16 7 S 2.61 91.84 5.31 -56.49 -0.30 91.54 16 8 O -0.99 -38.37 16.39 -127.65 -2.09 -40.47 16 9 O -0.99 -39.45 16.72 -127.65 -2.13 -41.59 16 10 C -0.59 -23.11 6.00 71.98 0.43 -22.68 16 11 C -0.01 -0.70 4.05 29.85 0.12 -0.58 16 12 C -0.53 -30.98 9.66 25.60 0.25 -30.73 16 13 H 0.05 2.87 7.99 -2.91 -0.02 2.84 16 14 C 0.01 0.88 5.47 84.65 0.46 1.34 16 15 N -0.94 -58.96 13.96 21.45 0.30 -58.66 16 16 Si 0.93 44.81 27.47 68.60 1.88 46.69 16 17 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.25 -11.63 6.54 99.48 0.65 -10.98 16 20 C 0.10 2.03 5.64 87.40 0.49 2.53 16 21 C -0.19 -3.43 6.03 29.57 0.18 -3.26 16 22 C 0.06 1.01 6.04 70.32 0.43 1.44 16 23 O -0.38 -8.47 9.38 -144.94 -1.36 -9.83 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.80 7.82 -2.39 -0.02 0.78 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.89 7.09 -2.39 -0.02 1.87 16 31 H 0.13 4.91 6.33 -2.39 -0.02 4.90 16 32 H 0.13 4.95 8.14 -2.39 -0.02 4.93 16 33 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 34 H 0.03 1.47 7.57 -2.39 -0.02 1.45 16 35 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 36 H 0.09 1.96 6.69 -2.39 -0.02 1.95 16 37 H 0.11 1.45 8.10 -2.39 -0.02 1.43 16 38 H 0.05 1.27 6.18 -2.39 -0.01 1.26 16 39 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 0.84 7.27 -2.39 -0.02 0.82 16 Total: -1.00 -75.67 331.97 -0.36 -76.03 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.94 Total: 13.71 kcal Atomic # 6 Polarization: -54.99 SS G_CDS: 3.81 Total: -51.18 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -1.11 Total: -84.92 kcal Atomic # 8 Polarization: -86.29 SS G_CDS: -5.59 Total: -91.88 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Atomic # 16 Polarization: 91.84 SS G_CDS: -0.30 Total: 91.54 kcal Total: -75.67 -0.36 -76.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331997656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.162 kcal (2) G-P(sol) polarization free energy of solvation -75.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds