Wall clock time and date at job start Tue Mar 31 2020 07:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47182 * 2 1 4 4 H 1.09000 * 108.45097 * 57.11489 * 3 2 1 5 5 C 1.46918 * 108.62254 * 174.99746 * 3 2 1 6 6 N 1.50116 * 106.85253 * 177.96533 * 5 3 2 7 7 S 1.65602 * 120.63752 * 111.28862 * 6 5 3 8 8 O 1.42097 * 104.27707 * 206.06826 * 7 6 5 9 9 O 1.42105 * 104.27365 * 333.92593 * 7 6 5 10 10 C 1.81405 * 104.45236 * 89.99141 * 7 6 5 11 11 C 1.52999 * 109.47198 * 180.02562 * 10 7 6 12 12 C 1.50698 * 109.47135 * 180.02562 * 11 10 7 13 13 H 1.07991 * 119.99951 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99710 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99627 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00127 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46857 * 90.00124 * 16 14 12 18 18 H 1.48502 * 109.46978 * 209.99920 * 16 14 12 19 19 H 1.48498 * 109.47176 * 330.00208 * 16 14 12 20 20 C 1.43425 * 118.72780 * 291.29852 * 6 5 3 21 21 C 1.55332 * 116.23771 * 89.36154 * 20 6 5 22 22 C 1.55182 * 108.87295 * 319.46297 * 21 20 6 23 23 O 1.39647 * 110.56558 * 322.14358 * 22 21 20 24 24 H 1.08998 * 109.47359 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47568 * 300.00040 * 1 2 3 26 26 H 1.08997 * 109.46998 * 60.00131 * 1 2 3 27 27 H 1.08993 * 109.47536 * 239.99994 * 2 1 3 28 28 H 1.09000 * 109.47185 * 119.99122 * 2 1 3 29 29 H 1.09002 * 109.99086 * 58.60142 * 5 3 2 30 30 H 1.08998 * 109.98613 * 297.32626 * 5 3 2 31 31 H 1.08996 * 109.47104 * 300.00061 * 10 7 6 32 32 H 1.09007 * 109.46571 * 60.00272 * 10 7 6 33 33 H 1.09008 * 109.46973 * 300.00342 * 11 10 7 34 34 H 1.09000 * 109.47056 * 60.00185 * 11 10 7 35 35 H 0.97002 * 120.00116 * 180.02562 * 15 14 12 36 36 H 1.08991 * 108.12723 * 211.12159 * 20 6 5 37 37 H 1.08995 * 108.12556 * 327.60412 * 20 6 5 38 38 H 1.08999 * 109.56812 * 79.27723 * 21 20 6 39 39 H 1.08996 * 109.57049 * 199.51969 * 21 20 6 40 40 H 1.09005 * 109.25994 * 82.42728 * 22 21 20 41 41 H 1.08998 * 109.26030 * 201.86621 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6257 1.9549 0.8683 5 6 3.5040 1.4225 0.1214 6 7 3.9648 2.8502 0.0666 7 16 4.6061 3.5820 1.4066 8 8 4.3468 4.9650 1.2084 9 8 4.0314 2.8781 2.4991 10 6 6.3854 3.2459 1.2982 11 6 7.0977 3.8781 2.4956 12 6 8.5759 3.5994 2.4052 13 1 8.9682 3.0289 1.5764 14 6 9.4276 4.0729 3.3807 15 7 10.7177 3.8301 3.3015 16 14 8.7492 5.0603 4.8139 17 1 8.3908 4.1404 5.9231 18 1 9.7779 6.0235 5.2823 19 1 7.5397 5.8020 4.3755 20 6 3.8388 3.5682 -1.1686 21 6 2.5002 4.3246 -1.3898 22 6 1.3326 3.4376 -0.8817 23 8 1.5721 2.0942 -1.1786 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.9387 0.8586 -0.7040 30 1 3.7929 0.9739 1.0718 31 1 6.5527 2.1689 1.3035 32 1 6.7797 3.6704 0.3748 33 1 6.9304 4.9552 2.4907 34 1 6.7033 3.4533 3.4187 35 1 11.3169 4.1628 3.9880 36 1 4.6510 4.2930 -1.2238 37 1 3.9675 2.8602 -1.9871 38 1 2.5147 5.2623 -0.8344 39 1 2.3688 4.5312 -2.4518 40 1 1.2348 3.5554 0.1975 41 1 0.4065 3.7524 -1.3625 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331997657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:58 Heat of formation + Delta-G solvation = -119.851948 kcal Electronic energy + Delta-G solvation = -22737.676200 eV Core-core repulsion = 19358.933926 eV Total energy + Delta-G solvation = -3378.742274 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11075 -36.86889 -35.79118 -35.48763 -34.62812 -33.97360 -31.51023 -31.37207 -28.48668 -26.14616 -25.92538 -23.25503 -21.66013 -21.43114 -21.04593 -18.59234 -17.83673 -17.04161 -16.89605 -16.31837 -15.80639 -15.37001 -15.14257 -14.78499 -14.33846 -14.07757 -13.91764 -13.70370 -13.45713 -12.83723 -12.75455 -12.55013 -12.29030 -12.13260 -11.93143 -11.78496 -11.76563 -11.55589 -11.27909 -11.23222 -11.22763 -11.10091 -10.78305 -10.54769 -10.46980 -10.17099 -9.77065 -9.71678 -9.45040 -8.90638 -8.68611 -6.18773 -4.20228 0.57455 2.81526 3.24481 3.31969 3.35909 3.72565 4.13468 4.32107 4.33661 4.59000 4.66633 4.75522 4.90342 4.94056 5.00546 5.10685 5.12638 5.18672 5.32188 5.43952 5.46275 5.48372 5.52698 5.65731 5.68952 5.71737 5.76929 5.82447 5.87945 5.97663 6.11753 6.14796 6.25120 6.60774 6.78266 6.90775 7.06951 7.52177 8.34308 8.82313 9.40746 10.93616 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.028793 B = 0.004262 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.236894 B = 6568.456842 C = 6832.061431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.064 3.936 4 H 0.069 0.931 5 C 0.101 3.899 6 N -1.002 6.002 7 S 2.583 3.417 8 O -0.960 6.960 9 O -0.965 6.965 10 C -0.581 4.581 11 C -0.007 4.007 12 C -0.520 4.520 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.869 3.131 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.262 1.262 20 C 0.130 3.870 21 C -0.167 4.167 22 C 0.055 3.945 23 O -0.347 6.347 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.032 0.968 34 H 0.027 0.973 35 H 0.267 0.733 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.974 -5.160 -9.565 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.005 3.995 4 H 0.087 0.913 5 C -0.023 4.023 6 N -0.838 5.838 7 S 2.682 3.318 8 O -0.950 6.950 9 O -0.955 6.955 10 C -0.714 4.714 11 C -0.046 4.046 12 C -0.559 4.559 13 H 0.096 0.904 14 C -0.131 4.131 15 N -0.533 5.533 16 Si 0.695 3.305 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.187 1.187 20 C 0.003 3.997 21 C -0.207 4.207 22 C -0.023 4.023 23 O -0.265 6.265 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.124 0.876 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.344 -4.743 -9.035 21.870 hybrid contribution 0.466 0.415 0.588 0.857 sum -18.878 -4.328 -8.447 21.130 Atomic orbital electron populations 1.21695 0.95209 1.01494 1.02189 1.21722 0.97013 0.94776 1.03017 1.21557 0.94527 0.94972 0.88445 0.91304 1.21581 0.94856 0.81529 1.04326 1.57894 1.77285 1.21074 1.27518 1.05922 0.78759 0.74143 0.72998 1.93547 1.84710 1.31982 1.84785 1.93535 1.76237 1.74358 1.51391 1.30321 1.20324 1.11019 1.09755 1.19412 0.98501 0.96133 0.90562 1.20844 0.88360 1.35985 1.10723 0.90402 1.24986 0.94743 0.95494 0.97857 1.69878 1.02724 1.45721 1.34963 0.86927 0.79546 0.80853 0.83147 1.19633 1.20689 1.18656 1.20606 0.97068 0.95725 0.86291 1.23413 0.95436 0.99604 1.02246 1.22546 0.97213 0.82624 0.99956 1.87677 1.84884 1.21024 1.32889 0.92765 0.92994 0.92002 0.90913 0.90394 0.89653 0.87644 0.85667 0.85657 0.94992 0.95432 0.92345 0.91112 0.90740 0.90154 0.90300 0.92804 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.77 37.16 0.36 -0.85 16 2 C -0.13 -1.09 5.55 -26.73 -0.15 -1.24 16 3 C 0.06 0.69 2.06 -29.64 -0.06 0.63 16 4 H 0.07 0.81 6.78 -51.93 -0.35 0.46 16 5 C 0.10 1.11 5.34 -4.93 -0.03 1.09 16 6 N -1.00 -13.12 2.83 -115.57 -0.33 -13.44 16 7 S 2.58 43.81 5.36 -107.50 -0.58 43.23 16 8 O -0.96 -18.49 17.10 -57.54 -0.98 -19.48 16 9 O -0.96 -18.28 16.80 -57.54 -0.97 -19.25 16 10 C -0.58 -10.63 6.12 37.16 0.23 -10.40 16 11 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 12 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 13 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 16 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 20 C 0.13 1.53 4.84 -4.43 -0.02 1.51 16 21 C -0.17 -1.83 6.75 -24.34 -0.16 -1.99 16 22 C 0.05 0.59 6.38 38.31 0.24 0.83 16 23 O -0.35 -3.86 9.16 -31.96 -0.29 -4.16 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.11 1.13 7.24 -51.93 -0.38 0.75 16 31 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 32 H 0.13 2.10 8.14 -51.92 -0.42 1.68 16 33 H 0.03 0.76 7.20 -51.92 -0.37 0.38 16 34 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16 37 H 0.07 0.76 7.98 -51.93 -0.41 0.35 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.63 6.67 -51.93 -0.35 0.28 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -33.34 335.97 -8.98 -42.32 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.87 Total: -1.26 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -0.13 Total: -23.57 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.45 Total: -39.65 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -2.24 Total: -42.88 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 43.81 SS G_CDS: -0.58 Total: 43.23 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.34 -8.98 -42.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331997657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.535 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds