Wall clock time and date at job start Tue Mar 31 2020 07:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47182 * 2 1 4 4 H 1.09000 * 108.45097 * 57.11489 * 3 2 1 5 5 C 1.46918 * 108.62254 * 174.99746 * 3 2 1 6 6 N 1.50116 * 106.85253 * 177.96533 * 5 3 2 7 7 S 1.65602 * 120.63752 * 111.28862 * 6 5 3 8 8 O 1.42097 * 104.27707 * 206.06826 * 7 6 5 9 9 O 1.42105 * 104.27365 * 333.92593 * 7 6 5 10 10 C 1.81405 * 104.45236 * 89.99141 * 7 6 5 11 11 C 1.52999 * 109.47198 * 180.02562 * 10 7 6 12 12 C 1.50698 * 109.47135 * 180.02562 * 11 10 7 13 13 H 1.07991 * 119.99951 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99710 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99627 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00127 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46857 * 90.00124 * 16 14 12 18 18 H 1.48502 * 109.46978 * 209.99920 * 16 14 12 19 19 H 1.48498 * 109.47176 * 330.00208 * 16 14 12 20 20 C 1.43425 * 118.72780 * 291.29852 * 6 5 3 21 21 C 1.55332 * 116.23771 * 89.36154 * 20 6 5 22 22 C 1.55182 * 108.87295 * 319.46297 * 21 20 6 23 23 O 1.39647 * 110.56558 * 322.14358 * 22 21 20 24 24 H 1.08998 * 109.47359 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47568 * 300.00040 * 1 2 3 26 26 H 1.08997 * 109.46998 * 60.00131 * 1 2 3 27 27 H 1.08993 * 109.47536 * 239.99994 * 2 1 3 28 28 H 1.09000 * 109.47185 * 119.99122 * 2 1 3 29 29 H 1.09002 * 109.99086 * 58.60142 * 5 3 2 30 30 H 1.08998 * 109.98613 * 297.32626 * 5 3 2 31 31 H 1.08996 * 109.47104 * 300.00061 * 10 7 6 32 32 H 1.09007 * 109.46571 * 60.00272 * 10 7 6 33 33 H 1.09008 * 109.46973 * 300.00342 * 11 10 7 34 34 H 1.09000 * 109.47056 * 60.00185 * 11 10 7 35 35 H 0.97002 * 120.00116 * 180.02562 * 15 14 12 36 36 H 1.08991 * 108.12723 * 211.12159 * 20 6 5 37 37 H 1.08995 * 108.12556 * 327.60412 * 20 6 5 38 38 H 1.08999 * 109.56812 * 79.27723 * 21 20 6 39 39 H 1.08996 * 109.57049 * 199.51969 * 21 20 6 40 40 H 1.09005 * 109.25994 * 82.42728 * 22 21 20 41 41 H 1.08998 * 109.26030 * 201.86621 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6257 1.9549 0.8683 5 6 3.5040 1.4225 0.1214 6 7 3.9648 2.8502 0.0666 7 16 4.6061 3.5820 1.4066 8 8 4.3468 4.9650 1.2084 9 8 4.0314 2.8781 2.4991 10 6 6.3854 3.2459 1.2982 11 6 7.0977 3.8781 2.4956 12 6 8.5759 3.5994 2.4052 13 1 8.9682 3.0289 1.5764 14 6 9.4276 4.0729 3.3807 15 7 10.7177 3.8301 3.3015 16 14 8.7492 5.0603 4.8139 17 1 8.3908 4.1404 5.9231 18 1 9.7779 6.0235 5.2823 19 1 7.5397 5.8020 4.3755 20 6 3.8388 3.5682 -1.1686 21 6 2.5002 4.3246 -1.3898 22 6 1.3326 3.4376 -0.8817 23 8 1.5721 2.0942 -1.1786 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.9387 0.8586 -0.7040 30 1 3.7929 0.9739 1.0718 31 1 6.5527 2.1689 1.3035 32 1 6.7797 3.6704 0.3748 33 1 6.9304 4.9552 2.4907 34 1 6.7033 3.4533 3.4187 35 1 11.3169 4.1628 3.9880 36 1 4.6510 4.2930 -1.2238 37 1 3.9675 2.8602 -1.9871 38 1 2.5147 5.2623 -0.8344 39 1 2.3688 4.5312 -2.4518 40 1 1.2348 3.5554 0.1975 41 1 0.4065 3.7524 -1.3625 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331997657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:58 Heat of formation + Delta-G solvation = -143.596518 kcal Electronic energy + Delta-G solvation = -22738.705842 eV Core-core repulsion = 19358.933926 eV Total energy + Delta-G solvation = -3379.771916 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95955 -38.29597 -37.09860 -36.59973 -35.91424 -35.39986 -33.49512 -32.16716 -29.35979 -27.88756 -26.96603 -24.10994 -23.15993 -22.33227 -22.19862 -19.90241 -19.31173 -18.66997 -17.82330 -17.46412 -17.00971 -16.51920 -16.39832 -16.29727 -15.72969 -15.26962 -14.85136 -14.80095 -14.68141 -14.36574 -13.82961 -13.66390 -13.54150 -13.33500 -13.25016 -13.08954 -13.03823 -12.97897 -12.86056 -12.46680 -12.25812 -12.06218 -11.97394 -11.82585 -11.73583 -11.56446 -11.45044 -11.22954 -10.86077 -10.57709 -9.98025 -8.38181 -6.44249 -0.79335 1.30725 1.32614 1.42646 1.61790 2.28082 2.74903 2.93056 2.95582 3.09069 3.54275 3.81801 3.93090 3.96508 4.03167 4.09552 4.13067 4.25447 4.29397 4.45680 4.52305 4.53359 4.68209 4.73147 4.83876 4.89848 4.90125 4.98375 5.04831 5.06056 5.10814 5.16405 5.23160 5.28585 5.45278 5.47144 5.64212 6.14976 6.23621 6.61777 7.20278 8.77423 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.028793 B = 0.004262 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.236894 B = 6568.456842 C = 6832.061431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.061 3.939 4 H 0.054 0.946 5 C 0.094 3.906 6 N -0.993 5.993 7 S 2.610 3.390 8 O -0.984 6.984 9 O -0.985 6.985 10 C -0.588 4.588 11 C -0.016 4.016 12 C -0.529 4.529 13 H 0.049 0.951 14 C 0.014 3.986 15 N -0.939 5.939 16 Si 0.925 3.075 17 H -0.259 1.259 18 H -0.273 1.273 19 H -0.251 1.251 20 C 0.118 3.882 21 C -0.167 4.167 22 C 0.052 3.948 23 O -0.348 6.348 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.030 0.970 34 H 0.031 0.969 35 H 0.270 0.730 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.040 0.960 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.750 -5.620 -10.165 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C 0.002 3.998 4 H 0.072 0.928 5 C -0.030 4.030 6 N -0.831 5.831 7 S 2.707 3.293 8 O -0.974 6.974 9 O -0.975 6.975 10 C -0.719 4.719 11 C -0.055 4.055 12 C -0.568 4.568 13 H 0.067 0.933 14 C -0.184 4.184 15 N -0.579 5.579 16 Si 0.747 3.253 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.174 1.174 20 C -0.009 4.009 21 C -0.207 4.207 22 C -0.026 4.026 23 O -0.266 6.266 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.058 0.942 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.113 -5.206 -9.634 23.783 hybrid contribution 0.989 0.489 0.653 1.282 sum -20.123 -4.717 -8.981 22.535 Atomic orbital electron populations 1.21684 0.94967 1.02173 1.01655 1.21737 0.97211 0.93352 1.03968 1.21593 0.94249 0.96102 0.87838 0.92845 1.21898 0.95238 0.80218 1.05605 1.57588 1.76401 1.22176 1.26942 1.04920 0.77667 0.73432 0.73295 1.93511 1.84681 1.33795 1.85409 1.93503 1.76168 1.74685 1.53123 1.30330 1.21874 1.11718 1.07973 1.19367 0.96406 0.96569 0.93193 1.21167 0.90876 1.35064 1.09663 0.93269 1.25873 0.94977 0.96761 1.00830 1.70004 1.04136 1.47392 1.36344 0.86030 0.79450 0.79807 0.79995 1.18356 1.19797 1.17444 1.20879 0.97659 0.96390 0.85955 1.23435 0.95015 0.98792 1.03458 1.22604 0.98013 0.82625 0.99364 1.87672 1.84921 1.21044 1.32975 0.91488 0.93491 0.92586 0.89893 0.89490 0.87102 0.87419 0.84160 0.84502 0.95143 0.95065 0.92059 0.91187 0.88573 0.91610 0.88053 0.94185 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.77 71.98 0.70 -1.42 16 2 C -0.12 -1.84 5.55 30.59 0.17 -1.67 16 3 C 0.06 1.19 2.06 28.71 0.06 1.25 16 4 H 0.05 1.21 6.78 -2.39 -0.02 1.19 16 5 C 0.09 1.84 5.34 83.79 0.45 2.29 16 6 N -0.99 -24.16 2.83 -519.54 -1.47 -25.63 16 7 S 2.61 85.58 5.36 -56.49 -0.30 85.28 16 8 O -0.98 -37.12 17.10 -127.65 -2.18 -39.30 16 9 O -0.98 -36.26 16.80 -127.65 -2.15 -38.40 16 10 C -0.59 -21.00 6.12 71.98 0.44 -20.56 16 11 C -0.02 -0.76 4.05 29.85 0.12 -0.64 16 12 C -0.53 -29.89 9.66 25.60 0.25 -29.65 16 13 H 0.05 2.97 7.99 -2.92 -0.02 2.94 16 14 C 0.01 0.83 5.47 84.66 0.46 1.29 16 15 N -0.94 -57.64 13.96 21.45 0.30 -57.34 16 16 Si 0.92 43.72 27.47 68.60 1.88 45.61 16 17 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 20 C 0.12 2.51 4.84 87.75 0.42 2.94 16 21 C -0.17 -3.33 6.75 32.14 0.22 -3.11 16 22 C 0.05 1.02 6.38 72.73 0.46 1.49 16 23 O -0.35 -6.94 9.16 -137.26 -1.26 -8.19 16 24 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.87 7.67 -2.39 -0.02 0.85 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.09 1.13 8.13 -2.39 -0.02 1.11 16 29 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.11 2.09 7.24 -2.39 -0.02 2.07 16 31 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 32 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 33 H 0.03 1.42 7.20 -2.38 -0.02 1.41 16 34 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 35 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.07 1.51 7.73 -2.39 -0.02 1.49 16 37 H 0.10 1.66 7.98 -2.39 -0.02 1.64 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.04 0.90 6.67 -2.38 -0.02 0.88 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -71.45 335.97 -0.48 -71.94 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.94 Total: 13.85 kcal Atomic # 6 Polarization: -51.55 SS G_CDS: 3.76 Total: -47.79 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -1.17 Total: -82.97 kcal Atomic # 8 Polarization: -80.31 SS G_CDS: -5.59 Total: -85.90 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.61 kcal Atomic # 16 Polarization: 85.58 SS G_CDS: -0.30 Total: 85.28 kcal Total: -71.45 -0.48 -71.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331997657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.660 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds