Wall clock time and date at job start Tue Mar 31 2020 06:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52997 * 109.46057 * 60.02426 * 3 2 1 5 5 C 1.53040 * 109.45655 * 300.06459 * 3 2 1 6 6 C 1.53188 * 109.31487 * 301.34454 * 5 3 2 7 7 N 1.46919 * 108.77732 * 305.36847 * 6 5 3 8 8 S 1.65613 * 120.63206 * 233.63077 * 7 6 5 9 9 O 1.42103 * 104.27245 * 26.04613 * 8 7 6 10 10 O 1.42093 * 104.27767 * 153.90714 * 8 7 6 11 11 C 1.81399 * 104.44814 * 269.97673 * 8 7 6 12 12 C 1.52996 * 109.47292 * 179.97438 * 11 8 7 13 13 C 1.50693 * 109.47350 * 179.97438 * 12 11 8 14 14 H 1.08002 * 120.00023 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00218 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99643 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00164 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47215 * 90.00056 * 17 15 13 19 19 H 1.48502 * 109.47200 * 209.99783 * 17 15 13 20 20 H 1.48500 * 109.47409 * 329.99985 * 17 15 13 21 21 C 1.46925 * 118.73959 * 53.60680 * 7 6 5 22 22 C 1.53042 * 109.45729 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 24 24 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 26 26 H 1.09004 * 109.47227 * 60.00611 * 4 3 2 27 27 H 1.09002 * 109.47119 * 180.02562 * 4 3 2 28 28 H 1.08996 * 109.47351 * 300.00270 * 4 3 2 29 29 H 1.09004 * 109.49853 * 61.29970 * 5 3 2 30 30 H 1.09004 * 109.49389 * 181.39371 * 5 3 2 31 31 H 1.09010 * 109.58547 * 185.57880 * 6 5 3 32 32 H 1.09002 * 109.58468 * 65.15863 * 6 5 3 33 33 H 1.09003 * 109.47166 * 299.99851 * 11 8 7 34 34 H 1.09004 * 109.46769 * 59.99575 * 11 8 7 35 35 H 1.08998 * 109.46906 * 300.00551 * 12 11 8 36 36 H 1.09007 * 109.46698 * 60.00245 * 12 11 8 37 37 H 0.96995 * 119.99547 * 179.97438 * 16 15 13 38 38 H 1.09007 * 109.58546 * 186.60536 * 21 7 6 39 39 H 1.09000 * 109.58691 * 66.18234 * 21 7 6 40 40 H 1.09006 * 109.49579 * 178.60488 * 22 3 2 41 41 H 1.09000 * 109.49469 * 298.66582 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5590 2.0643 1.2496 5 6 1.5571 2.0652 -1.2489 6 6 1.9802 1.2854 -2.4977 7 7 3.4271 1.0386 -2.4333 8 16 4.4148 1.4784 -3.6879 9 8 3.7258 2.5502 -4.3170 10 8 5.6839 1.6789 -3.0811 11 6 4.4491 0.0220 -4.7688 12 6 5.3396 0.3067 -5.9800 13 6 5.3686 -0.9033 -6.8777 14 1 4.8077 -1.7870 -6.6112 15 6 6.1113 -0.8824 -8.0392 16 7 6.7948 0.1934 -8.3633 17 14 6.1479 -2.3826 -9.1515 18 1 5.0492 -2.2882 -10.1461 19 1 7.4522 -2.4426 -9.8590 20 1 5.9713 -3.6096 -8.3339 21 6 3.9813 0.3946 -1.2347 22 6 3.5358 1.1844 0.0006 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8811 1.5232 2.1394 27 1 2.0019 3.0603 1.2495 28 1 0.4725 2.1502 1.2500 29 1 0.4723 2.1715 -1.2365 30 1 2.0197 3.0522 -1.2621 31 1 1.7483 1.8689 -3.3888 32 1 1.4485 0.3346 -2.5323 33 1 4.8465 -0.8303 -4.2176 34 1 3.4376 -0.2034 -5.1069 35 1 4.9419 1.1589 -6.5310 36 1 6.3511 0.5324 -5.6422 37 1 7.3175 0.2080 -9.1802 38 1 5.0698 0.3901 -1.2924 39 1 3.6128 -0.6290 -1.1663 40 1 3.9798 2.1796 -0.0244 41 1 3.8590 0.6644 0.9024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341223720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:01 Heat of formation + Delta-G solvation = -127.614179 kcal Electronic energy + Delta-G solvation = -22575.034552 eV Core-core repulsion = 19195.955682 eV Total energy + Delta-G solvation = -3379.078870 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.98697 -36.63373 -36.39833 -35.37820 -33.86157 -32.68641 -31.24813 -31.12719 -28.12817 -26.91810 -25.54732 -23.51247 -22.68246 -21.50337 -20.11074 -18.50380 -17.62526 -16.52253 -16.01562 -15.87036 -15.66915 -15.51209 -15.36760 -14.56511 -14.49654 -14.34839 -13.58241 -13.45016 -13.33677 -12.87568 -12.62840 -12.49066 -12.22194 -12.06851 -11.76630 -11.72910 -11.60209 -11.56087 -11.43965 -11.15110 -11.06414 -10.94083 -10.72661 -10.38783 -10.37379 -10.35222 -9.74230 -9.68668 -9.28071 -8.69236 -8.48738 -6.10875 -4.16263 0.79892 3.06847 3.27283 3.33423 3.36495 3.58447 4.32058 4.40841 4.45094 4.49908 4.65064 4.68441 4.97812 5.04984 5.12353 5.14043 5.24268 5.31065 5.34074 5.36031 5.40615 5.51239 5.56871 5.63454 5.66498 5.75051 5.80413 5.84608 5.92128 5.96677 6.14615 6.26903 6.52737 6.74914 7.05886 7.32085 7.38230 7.82424 8.19741 8.87221 9.48369 11.00217 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030147 B = 0.003871 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.564105 B = 7230.970829 C = 7598.312572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.373 6.373 3 C 0.115 3.885 4 C -0.177 4.177 5 C -0.157 4.157 6 C 0.124 3.876 7 N -1.005 6.005 8 S 2.590 3.410 9 O -0.966 6.966 10 O -0.965 6.965 11 C -0.589 4.589 12 C 0.028 3.972 13 C -0.520 4.520 14 H 0.061 0.939 15 C 0.057 3.943 16 N -0.891 5.891 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.122 3.878 22 C -0.115 4.115 23 H 0.044 0.956 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.629 1.293 18.656 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.292 6.292 3 C 0.076 3.924 4 C -0.234 4.234 5 C -0.196 4.196 6 C -0.002 4.002 7 N -0.842 5.842 8 S 2.690 3.310 9 O -0.956 6.956 10 O -0.955 6.955 11 C -0.722 4.722 12 C -0.011 4.011 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.004 4.004 22 C -0.154 4.154 23 H 0.063 0.937 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.971 2.067 18.468 22.105 hybrid contribution -0.471 -1.168 -0.737 1.459 sum -12.442 0.899 17.731 21.680 Atomic orbital electron populations 1.22773 0.81891 1.02507 1.00070 1.87975 1.19146 1.27141 1.94918 1.21455 0.94055 0.83316 0.93600 1.22410 1.01722 1.01096 0.98217 1.22468 1.01456 1.00267 0.95381 1.21271 0.80322 1.00016 0.98574 1.57902 1.17617 1.77020 1.31612 1.05658 0.73337 0.77738 0.74298 1.93519 1.73968 1.51545 1.76610 1.93521 1.41294 1.85686 1.75019 1.30491 1.10102 1.17922 1.13717 1.18964 0.93560 0.99213 0.89404 1.21014 1.29859 0.99287 1.05750 0.92046 1.25072 0.95158 0.96459 0.97820 1.69959 1.30183 1.27884 1.24882 0.86465 0.77528 0.82700 0.80563 1.20479 1.21007 1.19746 1.21336 0.99197 0.96415 0.83426 1.21875 0.92462 1.02059 0.98980 0.93714 0.89886 0.94075 0.91701 0.91407 0.92211 0.90647 0.90257 0.88811 0.91272 0.86249 0.86337 0.94918 0.94878 0.92549 0.88760 0.90771 0.90047 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.21 101.05 1.03 1.22 16 2 O -0.37 -3.87 9.07 -35.23 -0.32 -4.19 16 3 C 0.12 1.13 0.71 -90.58 -0.06 1.07 16 4 C -0.18 -1.38 8.25 37.16 0.31 -1.08 16 5 C -0.16 -1.60 4.48 -26.61 -0.12 -1.72 16 6 C 0.12 1.51 6.19 -3.72 -0.02 1.49 16 7 N -1.01 -14.25 3.22 -113.49 -0.37 -14.62 16 8 S 2.59 47.69 5.45 -107.50 -0.59 47.10 16 9 O -0.97 -20.14 16.59 -57.54 -0.95 -21.09 16 10 O -0.96 -20.12 16.59 -57.54 -0.95 -21.08 16 11 C -0.59 -11.59 6.12 37.16 0.23 -11.36 16 12 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 13 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 17 Si 0.90 21.37 29.54 -169.99 -5.02 16.34 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 C 0.12 1.51 6.19 -3.69 -0.02 1.49 16 22 C -0.11 -1.21 5.12 -26.59 -0.14 -1.35 16 23 H 0.04 0.32 6.44 -51.93 -0.33 -0.01 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.04 0.27 6.42 -51.93 -0.33 -0.06 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.41 6.54 -51.93 -0.34 0.07 16 29 H 0.08 0.63 6.61 -51.93 -0.34 0.28 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 1.20 6.86 -51.92 -0.36 0.84 16 32 H 0.07 0.76 7.81 -51.93 -0.41 0.36 16 33 H 0.12 2.14 8.14 -51.92 -0.42 1.71 16 34 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.09 1.22 6.86 -51.92 -0.36 0.86 16 39 H 0.07 0.86 7.81 -51.93 -0.41 0.45 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -34.39 334.70 -8.41 -42.80 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.64 Total: -1.35 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 0.65 Total: -23.00 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.37 Total: -40.59 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -2.23 Total: -46.35 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 47.69 SS G_CDS: -0.59 Total: 47.10 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.39 -8.41 -42.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341223720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.815 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds