Wall clock time and date at job start Tue Mar 31 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52997 * 109.46057 * 60.02426 * 3 2 1 5 5 C 1.53040 * 109.45655 * 300.06459 * 3 2 1 6 6 C 1.53188 * 109.31487 * 301.34454 * 5 3 2 7 7 N 1.46919 * 108.77732 * 305.36847 * 6 5 3 8 8 S 1.65613 * 120.63206 * 233.63077 * 7 6 5 9 9 O 1.42103 * 104.27245 * 26.04613 * 8 7 6 10 10 O 1.42093 * 104.27767 * 153.90714 * 8 7 6 11 11 C 1.81399 * 104.44814 * 269.97673 * 8 7 6 12 12 C 1.52996 * 109.47292 * 179.97438 * 11 8 7 13 13 C 1.50693 * 109.47350 * 179.97438 * 12 11 8 14 14 H 1.08002 * 120.00023 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00218 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99643 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00164 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47215 * 90.00056 * 17 15 13 19 19 H 1.48502 * 109.47200 * 209.99783 * 17 15 13 20 20 H 1.48500 * 109.47409 * 329.99985 * 17 15 13 21 21 C 1.46925 * 118.73959 * 53.60680 * 7 6 5 22 22 C 1.53042 * 109.45729 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 24 24 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 26 26 H 1.09004 * 109.47227 * 60.00611 * 4 3 2 27 27 H 1.09002 * 109.47119 * 180.02562 * 4 3 2 28 28 H 1.08996 * 109.47351 * 300.00270 * 4 3 2 29 29 H 1.09004 * 109.49853 * 61.29970 * 5 3 2 30 30 H 1.09004 * 109.49389 * 181.39371 * 5 3 2 31 31 H 1.09010 * 109.58547 * 185.57880 * 6 5 3 32 32 H 1.09002 * 109.58468 * 65.15863 * 6 5 3 33 33 H 1.09003 * 109.47166 * 299.99851 * 11 8 7 34 34 H 1.09004 * 109.46769 * 59.99575 * 11 8 7 35 35 H 1.08998 * 109.46906 * 300.00551 * 12 11 8 36 36 H 1.09007 * 109.46698 * 60.00245 * 12 11 8 37 37 H 0.96995 * 119.99547 * 179.97438 * 16 15 13 38 38 H 1.09007 * 109.58546 * 186.60536 * 21 7 6 39 39 H 1.09000 * 109.58691 * 66.18234 * 21 7 6 40 40 H 1.09006 * 109.49579 * 178.60488 * 22 3 2 41 41 H 1.09000 * 109.49469 * 298.66582 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5590 2.0643 1.2496 5 6 1.5571 2.0652 -1.2489 6 6 1.9802 1.2854 -2.4977 7 7 3.4271 1.0386 -2.4333 8 16 4.4148 1.4784 -3.6879 9 8 3.7258 2.5502 -4.3170 10 8 5.6839 1.6789 -3.0811 11 6 4.4491 0.0220 -4.7688 12 6 5.3396 0.3067 -5.9800 13 6 5.3686 -0.9033 -6.8777 14 1 4.8077 -1.7870 -6.6112 15 6 6.1113 -0.8824 -8.0392 16 7 6.7948 0.1934 -8.3633 17 14 6.1479 -2.3826 -9.1515 18 1 5.0492 -2.2882 -10.1461 19 1 7.4522 -2.4426 -9.8590 20 1 5.9713 -3.6096 -8.3339 21 6 3.9813 0.3946 -1.2347 22 6 3.5358 1.1844 0.0006 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8811 1.5232 2.1394 27 1 2.0019 3.0603 1.2495 28 1 0.4725 2.1502 1.2500 29 1 0.4723 2.1715 -1.2365 30 1 2.0197 3.0522 -1.2621 31 1 1.7483 1.8689 -3.3888 32 1 1.4485 0.3346 -2.5323 33 1 4.8465 -0.8303 -4.2176 34 1 3.4376 -0.2034 -5.1069 35 1 4.9419 1.1589 -6.5310 36 1 6.3511 0.5324 -5.6422 37 1 7.3175 0.2080 -9.1802 38 1 5.0698 0.3901 -1.2924 39 1 3.6128 -0.6290 -1.1663 40 1 3.9798 2.1796 -0.0244 41 1 3.8590 0.6644 0.9024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341223720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:00 Heat of formation + Delta-G solvation = -152.502161 kcal Electronic energy + Delta-G solvation = -22576.113776 eV Core-core repulsion = 19195.955682 eV Total energy + Delta-G solvation = -3380.158094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.77499 -38.23449 -37.35471 -36.94888 -35.90043 -33.50365 -33.12728 -32.14712 -28.92033 -27.62068 -27.49739 -24.41794 -23.81423 -23.26179 -20.99010 -19.78588 -19.13237 -18.39875 -17.24592 -17.13518 -16.65660 -16.54888 -16.38298 -16.21874 -15.76441 -15.36812 -15.06645 -14.54543 -14.32146 -14.22812 -13.82407 -13.73660 -13.37937 -13.20366 -13.05674 -12.97810 -12.93687 -12.85967 -12.79648 -12.71923 -12.26764 -12.22718 -12.13593 -12.06436 -11.80487 -11.59595 -11.17003 -11.11946 -10.65509 -10.40376 -9.85919 -8.26837 -6.41224 -0.71171 1.40359 1.42449 1.53733 1.74149 2.37703 2.83938 2.92131 3.06274 3.17419 3.59698 3.73007 3.92446 3.97772 4.06114 4.18068 4.20467 4.42762 4.52211 4.56191 4.59497 4.70224 4.73366 4.73893 4.80268 4.82332 4.87519 4.94938 5.05938 5.14980 5.22016 5.25775 5.26073 5.29841 5.36650 5.67277 5.68796 6.05439 6.40079 6.72160 7.29003 8.85508 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030147 B = 0.003871 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.564105 B = 7230.970829 C = 7598.312572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.389 6.389 3 C 0.115 3.885 4 C -0.173 4.173 5 C -0.156 4.156 6 C 0.114 3.886 7 N -0.994 5.994 8 S 2.614 3.386 9 O -0.993 6.993 10 O -0.992 6.992 11 C -0.589 4.589 12 C 0.021 3.979 13 C -0.541 4.541 14 H 0.074 0.926 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.975 3.025 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.258 1.258 21 C 0.114 3.886 22 C -0.117 4.117 23 H 0.049 0.951 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.006 0.994 36 H 0.006 0.994 37 H 0.268 0.732 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.428 -0.186 19.979 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.309 6.309 3 C 0.076 3.924 4 C -0.230 4.230 5 C -0.195 4.195 6 C -0.010 4.010 7 N -0.833 5.833 8 S 2.713 3.287 9 O -0.983 6.983 10 O -0.982 6.982 11 C -0.721 4.721 12 C -0.018 4.018 13 C -0.580 4.580 14 H 0.093 0.907 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.799 3.201 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.182 1.182 21 C -0.010 4.010 22 C -0.156 4.156 23 H 0.068 0.932 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.779 0.578 19.791 24.122 hybrid contribution 0.033 -0.691 -1.066 1.271 sum -13.746 -0.113 18.725 23.229 Atomic orbital electron populations 1.22940 0.80592 1.03388 1.00923 1.87947 1.20616 1.27256 1.95060 1.21439 0.93351 0.83502 0.94152 1.22361 1.02499 1.00948 0.97188 1.22500 1.02877 0.99579 0.94578 1.21541 0.78798 1.01206 0.99485 1.57551 1.18219 1.77010 1.30555 1.04655 0.72916 0.76851 0.74315 1.93477 1.74451 1.52637 1.77740 1.93478 1.43325 1.85928 1.75516 1.30409 1.09872 1.19820 1.11973 1.18821 0.93352 0.98007 0.91636 1.21514 1.29892 1.00209 1.06339 0.90748 1.26133 0.94591 0.99825 0.99670 1.70105 1.31188 1.30398 1.25673 0.85291 0.77708 0.78767 0.78361 1.19503 1.20716 1.18198 1.21566 0.98844 0.97349 0.83288 1.21916 0.93470 1.01722 0.98465 0.93203 0.89116 0.92842 0.91318 0.91085 0.91044 0.88331 0.90939 0.89672 0.89598 0.84355 0.84349 0.97570 0.97571 0.92341 0.89620 0.89464 0.90435 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.21 113.37 1.16 1.37 16 2 O -0.39 -6.95 9.07 -148.98 -1.35 -8.30 16 3 C 0.11 1.96 0.71 -10.77 -0.01 1.95 16 4 C -0.17 -2.20 8.25 71.98 0.59 -1.61 16 5 C -0.16 -2.86 4.48 30.67 0.14 -2.72 16 6 C 0.11 2.61 6.19 86.36 0.53 3.14 16 7 N -0.99 -27.20 3.22 -512.99 -1.65 -28.85 16 8 S 2.61 97.33 5.45 -56.49 -0.31 97.02 16 9 O -0.99 -42.18 16.59 -127.65 -2.12 -44.30 16 10 O -0.99 -42.28 16.59 -127.65 -2.12 -44.40 16 11 C -0.59 -23.23 6.12 71.98 0.44 -22.79 16 12 C 0.02 1.11 4.98 29.84 0.15 1.26 16 13 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 14 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 15 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 16 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 17 Si 0.98 43.70 29.54 68.60 2.03 45.73 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 21 C 0.11 2.68 6.19 86.38 0.53 3.22 16 22 C -0.12 -2.25 5.12 30.69 0.16 -2.09 16 23 H 0.05 0.56 6.44 -2.39 -0.02 0.54 16 24 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.53 6.42 -2.39 -0.02 0.51 16 26 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.75 6.54 -2.39 -0.02 0.73 16 29 H 0.10 1.35 6.61 -2.39 -0.02 1.33 16 30 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.08 2.10 6.86 -2.38 -0.02 2.08 16 32 H 0.09 1.68 7.81 -2.39 -0.02 1.67 16 33 H 0.14 4.86 8.14 -2.39 -0.02 4.84 16 34 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 35 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.09 2.16 6.86 -2.38 -0.02 2.15 16 39 H 0.09 1.84 7.81 -2.39 -0.02 1.82 16 40 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -74.85 334.70 0.16 -74.70 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 1.00 Total: 13.90 kcal Atomic # 6 Polarization: -52.72 SS G_CDS: 4.39 Total: -48.33 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -1.37 Total: -86.02 kcal Atomic # 8 Polarization: -91.41 SS G_CDS: -5.59 Total: -97.00 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 97.33 SS G_CDS: -0.31 Total: 97.02 kcal Total: -74.85 0.16 -74.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341223720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.807 kcal (2) G-P(sol) polarization free energy of solvation -74.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds