Wall clock time and date at job start Tue Mar 31 2020 06:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53007 * 109.46779 * 2 1 4 4 C 1.52997 * 109.46784 * 119.99717 * 2 1 3 5 5 C 1.50694 * 109.47460 * 300.00248 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 C 1.52995 * 109.47410 * 240.00272 * 2 1 3 14 14 N 1.46492 * 109.47395 * 59.99690 * 13 2 1 15 15 S 1.65604 * 120.00007 * 165.00112 * 14 13 2 16 16 O 1.42102 * 104.27594 * 181.06851 * 15 14 13 17 17 O 1.42093 * 104.27562 * 308.92825 * 15 14 13 18 18 C 1.81403 * 104.44755 * 65.00337 * 15 14 13 19 19 H 1.08993 * 110.45721 * 64.29815 * 18 15 14 20 20 C 1.54511 * 110.50718 * 186.90516 * 18 15 14 21 21 C 1.54482 * 104.06368 * 118.64316 * 20 18 15 22 22 O 1.44427 * 104.80267 * 23.97756 * 21 20 18 23 23 C 1.44647 * 105.36758 * 319.56257 * 22 21 20 24 24 H 1.08993 * 109.47049 * 299.99824 * 1 2 3 25 25 H 1.09001 * 109.46762 * 60.00206 * 1 2 3 26 26 H 1.08999 * 109.46696 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46630 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46852 * 299.99745 * 3 2 1 29 29 H 1.08998 * 109.46963 * 59.99562 * 3 2 1 30 30 H 1.09005 * 109.46800 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47382 * 60.00518 * 4 2 1 32 32 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47128 * 180.02562 * 13 2 1 34 34 H 1.09006 * 109.46661 * 299.99799 * 13 2 1 35 35 H 0.97001 * 120.00448 * 344.99697 * 14 13 2 36 36 H 1.09000 * 110.50820 * 237.28552 * 20 18 15 37 37 H 1.08995 * 110.51518 * 359.85815 * 20 18 15 38 38 H 1.09003 * 110.37292 * 142.80415 * 21 20 18 39 39 H 1.08998 * 110.37006 * 265.03458 * 21 20 18 40 40 H 1.08995 * 110.34302 * 281.59659 * 23 22 21 41 41 H 1.09000 * 110.50531 * 159.18413 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8710 -0.4815 3.7320 8 7 2.6271 -1.5508 3.8527 9 14 1.2489 0.3994 5.2572 10 1 1.7437 -0.3006 6.4697 11 1 1.7439 1.7994 5.2567 12 1 -0.2361 0.3994 5.2576 13 6 2.0401 -0.7212 -1.2492 14 7 1.5518 -0.0306 -2.4453 15 16 2.2320 -0.3495 -3.9212 16 8 1.5366 0.5043 -4.8194 17 8 3.6283 -0.2018 -3.7028 18 6 1.8183 -2.0859 -4.2445 19 1 0.7396 -2.2090 -4.3405 20 6 2.5357 -2.5850 -5.5187 21 6 3.4378 -3.7339 -5.0159 22 8 2.8090 -4.1912 -3.7988 23 6 2.3687 -2.9917 -3.1207 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2493 32 1 2.8621 -1.8818 4.7337 33 1 3.1302 -0.7215 -1.2489 34 1 1.6768 -1.7489 -1.2492 35 1 0.8301 0.6134 -2.3730 36 1 1.8118 -2.9572 -6.2436 37 1 3.1370 -1.7878 -5.9557 38 1 3.4725 -4.5385 -5.7505 39 1 4.4427 -3.3651 -4.8104 40 1 3.2086 -2.5089 -2.6213 41 1 1.5827 -3.2257 -2.4028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344998043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:17 Heat of formation + Delta-G solvation = -131.225628 kcal Electronic energy + Delta-G solvation = -22683.842233 eV Core-core repulsion = 19304.606759 eV Total energy + Delta-G solvation = -3379.235474 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.53606 -37.82008 -37.13006 -36.04117 -33.67993 -32.67484 -31.96112 -29.58647 -27.06110 -26.50234 -25.97140 -23.57862 -22.77928 -22.18032 -19.41609 -18.47279 -17.86304 -17.04193 -16.92248 -16.36554 -15.80814 -15.58412 -15.05312 -14.58982 -14.54493 -14.18468 -13.84026 -13.41402 -12.91551 -12.85485 -12.47327 -12.33750 -12.16705 -12.12951 -12.07573 -11.93674 -11.78981 -11.60256 -11.26960 -11.00974 -10.87480 -10.67308 -10.61683 -10.43817 -10.28462 -10.10865 -9.92082 -9.31900 -9.19287 -8.94098 -8.37486 -6.02141 -4.03105 0.12093 2.65392 3.31327 3.36794 3.38378 3.42786 3.66446 3.90595 3.96542 4.43576 4.46769 4.57306 4.73666 4.85289 5.07677 5.15779 5.32092 5.34145 5.39434 5.39968 5.48894 5.51741 5.69376 5.78141 6.04821 6.17750 6.28483 6.35519 6.37802 6.62954 6.65828 7.01715 7.05361 7.10718 7.13347 7.59371 7.72309 7.96214 8.38705 9.01187 9.60230 11.09244 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024942 B = 0.004252 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.355309 B = 6583.431392 C = 7265.077619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.288 1.288 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.114 3.886 14 N -1.110 6.110 15 S 2.617 3.383 16 O -0.962 6.962 17 O -0.947 6.947 18 C -0.639 4.639 19 H 0.149 0.851 20 C -0.127 4.127 21 C 0.043 3.957 22 O -0.362 6.362 23 C 0.069 3.931 24 H 0.068 0.932 25 H 0.031 0.969 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.032 0.968 29 H 0.065 0.935 30 H 0.020 0.980 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.418 0.582 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.847 -2.147 -17.353 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.066 4.066 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.204 1.204 13 C -0.011 4.011 14 N -0.872 5.872 15 S 2.707 3.293 16 O -0.952 6.952 17 O -0.937 6.937 18 C -0.747 4.747 19 H 0.167 0.833 20 C -0.166 4.166 21 C -0.035 4.035 22 O -0.280 6.280 23 C -0.008 4.008 24 H 0.087 0.913 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.255 0.745 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.152 -2.036 -17.699 17.853 hybrid contribution -1.033 0.308 1.030 1.491 sum -2.185 -1.727 -16.669 16.900 Atomic orbital electron populations 1.21778 0.95290 1.01093 1.00473 1.20813 0.95427 0.96031 0.94374 1.21758 1.00668 0.95756 1.00404 1.19136 0.96475 0.95177 0.89618 1.21145 1.31271 1.12101 0.90506 0.92295 1.24996 0.95280 0.95066 0.99050 1.69945 1.36883 1.23031 1.23574 0.86713 0.79121 0.79822 0.82661 1.21410 1.20321 1.20358 1.21829 0.99355 0.95278 0.84624 1.55520 1.53181 1.55691 1.22786 1.04869 0.74871 0.76154 0.73398 1.93592 1.75035 1.62259 1.64301 1.93615 1.30994 1.84544 1.84520 1.32147 1.11732 1.26163 1.04666 0.83302 1.22691 0.99107 0.99605 0.95211 1.23490 0.96184 0.96501 0.87286 1.89185 1.76899 1.27655 1.34247 1.23491 0.99638 0.85139 0.92569 0.91338 0.95022 0.93335 0.93252 0.94857 0.91567 0.96199 0.96308 0.92981 0.90343 0.91911 0.74545 0.88604 0.90316 0.88216 0.91048 0.90253 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 2 C -0.06 -1.16 0.55 -154.50 -0.08 -1.25 16 3 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 4 C 0.03 0.78 4.04 -27.89 -0.11 0.67 16 5 C -0.51 -13.22 7.65 -34.44 -0.26 -13.49 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 9 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.11 1.70 3.54 -4.05 -0.01 1.68 16 14 N -1.11 -14.09 5.22 -10.62 -0.06 -14.14 16 15 S 2.62 32.59 4.80 -107.50 -0.52 32.07 16 16 O -0.96 -14.18 18.08 -57.54 -1.04 -15.22 16 17 O -0.95 -14.66 17.12 -57.54 -0.98 -15.65 16 18 C -0.64 -6.26 3.85 -25.16 -0.10 -6.36 16 19 H 0.15 1.15 8.14 -51.93 -0.42 0.73 16 20 C -0.13 -1.10 6.76 -25.16 -0.17 -1.27 16 21 C 0.04 0.39 7.64 37.94 0.29 0.68 16 22 O -0.36 -4.42 11.65 -35.23 -0.41 -4.83 16 23 C 0.07 0.77 5.43 37.94 0.21 0.98 16 24 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 25 H 0.03 0.42 6.60 -51.93 -0.34 0.08 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.50 7.20 -51.93 -0.37 0.13 16 29 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.08 1.21 7.49 -51.93 -0.39 0.82 16 34 H 0.06 0.82 5.66 -51.93 -0.29 0.52 16 35 H 0.42 4.93 6.44 -34.47 -0.22 4.71 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.61 7.67 -51.93 -0.40 0.21 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.92 6.40 -51.93 -0.33 0.59 16 41 H 0.11 1.15 6.99 -51.93 -0.36 0.79 16 LS Contribution 328.83 15.07 4.96 4.96 Total: -1.00 -32.77 328.83 -8.30 -41.06 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.22 Total: 1.58 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 0.25 Total: -20.69 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.68 Total: -39.16 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -2.44 Total: -35.69 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 32.59 SS G_CDS: -0.52 Total: 32.07 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.77 -8.30 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344998043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.163 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds