Wall clock time and date at job start Tue Mar 31 2020 06:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53007 * 109.46779 * 2 1 4 4 C 1.52997 * 109.46784 * 119.99717 * 2 1 3 5 5 C 1.50694 * 109.47460 * 300.00248 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 C 1.52995 * 109.47410 * 240.00272 * 2 1 3 14 14 N 1.46492 * 109.47395 * 59.99690 * 13 2 1 15 15 S 1.65604 * 120.00007 * 165.00112 * 14 13 2 16 16 O 1.42102 * 104.27594 * 181.06851 * 15 14 13 17 17 O 1.42093 * 104.27562 * 308.92825 * 15 14 13 18 18 C 1.81403 * 104.44755 * 65.00337 * 15 14 13 19 19 H 1.08993 * 110.45721 * 64.29815 * 18 15 14 20 20 C 1.54511 * 110.50718 * 186.90516 * 18 15 14 21 21 C 1.54482 * 104.06368 * 118.64316 * 20 18 15 22 22 O 1.44427 * 104.80267 * 23.97756 * 21 20 18 23 23 C 1.44647 * 105.36758 * 319.56257 * 22 21 20 24 24 H 1.08993 * 109.47049 * 299.99824 * 1 2 3 25 25 H 1.09001 * 109.46762 * 60.00206 * 1 2 3 26 26 H 1.08999 * 109.46696 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46630 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46852 * 299.99745 * 3 2 1 29 29 H 1.08998 * 109.46963 * 59.99562 * 3 2 1 30 30 H 1.09005 * 109.46800 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47382 * 60.00518 * 4 2 1 32 32 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47128 * 180.02562 * 13 2 1 34 34 H 1.09006 * 109.46661 * 299.99799 * 13 2 1 35 35 H 0.97001 * 120.00448 * 344.99697 * 14 13 2 36 36 H 1.09000 * 110.50820 * 237.28552 * 20 18 15 37 37 H 1.08995 * 110.51518 * 359.85815 * 20 18 15 38 38 H 1.09003 * 110.37292 * 142.80415 * 21 20 18 39 39 H 1.08998 * 110.37006 * 265.03458 * 21 20 18 40 40 H 1.08995 * 110.34302 * 281.59659 * 23 22 21 41 41 H 1.09000 * 110.50531 * 159.18413 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8710 -0.4815 3.7320 8 7 2.6271 -1.5508 3.8527 9 14 1.2489 0.3994 5.2572 10 1 1.7437 -0.3006 6.4697 11 1 1.7439 1.7994 5.2567 12 1 -0.2361 0.3994 5.2576 13 6 2.0401 -0.7212 -1.2492 14 7 1.5518 -0.0306 -2.4453 15 16 2.2320 -0.3495 -3.9212 16 8 1.5366 0.5043 -4.8194 17 8 3.6283 -0.2018 -3.7028 18 6 1.8183 -2.0859 -4.2445 19 1 0.7396 -2.2090 -4.3405 20 6 2.5357 -2.5850 -5.5187 21 6 3.4378 -3.7339 -5.0159 22 8 2.8090 -4.1912 -3.7988 23 6 2.3687 -2.9917 -3.1207 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2493 32 1 2.8621 -1.8818 4.7337 33 1 3.1302 -0.7215 -1.2489 34 1 1.6768 -1.7489 -1.2492 35 1 0.8301 0.6134 -2.3730 36 1 1.8118 -2.9572 -6.2436 37 1 3.1370 -1.7878 -5.9557 38 1 3.4725 -4.5385 -5.7505 39 1 4.4427 -3.3651 -4.8104 40 1 3.2086 -2.5089 -2.6213 41 1 1.5827 -3.2257 -2.4028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344998043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:15 Heat of formation + Delta-G solvation = -156.075302 kcal Electronic energy + Delta-G solvation = -22684.919796 eV Core-core repulsion = 19304.606759 eV Total energy + Delta-G solvation = -3380.313037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.34851 -39.19796 -38.23669 -37.14076 -35.25798 -33.69325 -33.46416 -30.36096 -28.93010 -27.89948 -27.28016 -24.73884 -24.25953 -22.98079 -20.43386 -19.87527 -18.85077 -18.31464 -17.99542 -17.84560 -16.87616 -16.52727 -16.40578 -15.96845 -15.71345 -15.44655 -14.93346 -14.61788 -14.37999 -14.01802 -13.88213 -13.64434 -13.32486 -13.27608 -13.16470 -13.09227 -12.87284 -12.68868 -12.59726 -12.49117 -12.37001 -12.25765 -12.14701 -11.94436 -11.58691 -11.39166 -10.96164 -10.91861 -10.79866 -10.45828 -10.33933 -8.10511 -6.16433 -0.86423 1.44316 1.45204 1.52299 1.64132 2.46719 2.55339 2.80740 3.07314 3.13527 3.24433 3.65428 3.83198 3.91239 3.98284 4.10393 4.16924 4.28004 4.44579 4.45213 4.58061 4.63413 4.74935 4.77842 4.81588 4.88269 4.92575 5.03151 5.18666 5.23981 5.52092 5.55031 5.58514 5.60600 5.62876 5.87702 5.95698 6.09422 6.38038 6.98315 7.50614 9.01227 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024942 B = 0.004252 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.355309 B = 6583.431392 C = 7265.077619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.063 4.063 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.515 4.515 6 H 0.066 0.934 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.951 3.049 10 H -0.291 1.291 11 H -0.272 1.272 12 H -0.268 1.268 13 C 0.122 3.878 14 N -1.106 6.106 15 S 2.628 3.372 16 O -0.982 6.982 17 O -0.983 6.983 18 C -0.618 4.618 19 H 0.179 0.821 20 C -0.134 4.134 21 C 0.032 3.968 22 O -0.382 6.382 23 C 0.059 3.941 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.050 0.950 30 H -0.011 1.011 31 H 0.000 1.000 32 H 0.259 0.741 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.424 0.576 36 H 0.122 0.878 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 -1.994 -18.888 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.064 4.064 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.553 4.553 6 H 0.084 0.916 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.777 3.223 10 H -0.216 1.216 11 H -0.197 1.197 12 H -0.193 1.193 13 C -0.004 4.004 14 N -0.868 5.868 15 S 2.722 3.278 16 O -0.972 6.972 17 O -0.974 6.974 18 C -0.729 4.729 19 H 0.197 0.803 20 C -0.173 4.173 21 C -0.044 4.044 22 O -0.301 6.301 23 C -0.019 4.019 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.007 0.993 31 H 0.019 0.981 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.261 0.739 36 H 0.141 0.859 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.803 -1.823 -19.235 19.524 hybrid contribution -0.485 0.214 1.435 1.530 sum -3.289 -1.609 -17.800 18.173 Atomic orbital electron populations 1.21728 0.93638 1.01659 1.01279 1.20660 0.96722 0.95674 0.93353 1.21733 0.99855 0.95834 1.01035 1.19021 0.94491 0.94692 0.91868 1.21585 1.30327 1.11971 0.91414 0.91562 1.25826 0.95746 0.95856 1.02300 1.70083 1.38683 1.24809 1.24017 0.85715 0.78968 0.78702 0.78935 1.21642 1.19717 1.19276 1.21599 0.98763 0.96046 0.84004 1.55325 1.53163 1.56146 1.22168 1.04383 0.73680 0.77057 0.72660 1.93566 1.75146 1.63999 1.64536 1.93572 1.33210 1.85762 1.84807 1.31953 1.13690 1.22345 1.04948 0.80342 1.22884 0.99702 0.99621 0.95076 1.23741 0.96058 0.97718 0.86914 1.89168 1.77247 1.28228 1.35426 1.23590 0.99748 0.85296 0.93242 0.93297 0.91426 0.92927 0.94580 0.91958 0.93117 0.99261 0.98142 0.93230 0.91535 0.89941 0.73867 0.85911 0.89650 0.85776 0.91360 0.91374 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 8.05 71.98 0.58 -3.31 16 2 C -0.06 -2.21 0.55 -52.18 -0.03 -2.24 16 3 C -0.13 -4.45 8.05 71.98 0.58 -3.87 16 4 C 0.04 1.76 4.04 29.85 0.12 1.89 16 5 C -0.51 -26.90 7.65 25.60 0.20 -26.70 16 6 H 0.07 3.30 5.68 -2.91 -0.02 3.29 16 7 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 8 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 9 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 13 C 0.12 3.50 3.54 86.38 0.31 3.81 16 14 N -1.11 -25.94 5.22 -187.50 -0.98 -26.92 16 15 S 2.63 61.04 4.80 -56.49 -0.27 60.76 16 16 O -0.98 -26.95 18.08 -127.65 -2.31 -29.26 16 17 O -0.98 -30.02 17.12 -127.65 -2.19 -32.20 16 18 C -0.62 -10.41 3.85 31.61 0.12 -10.29 16 19 H 0.18 2.01 8.14 -2.39 -0.02 1.99 16 20 C -0.13 -1.92 6.76 31.61 0.21 -1.71 16 21 C 0.03 0.53 7.64 72.49 0.55 1.09 16 22 O -0.38 -8.70 11.65 -148.98 -1.74 -10.43 16 23 C 0.06 1.22 5.43 72.49 0.39 1.61 16 24 H 0.05 1.70 6.62 -2.39 -0.02 1.69 16 25 H 0.07 1.60 6.60 -2.39 -0.02 1.58 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.79 7.20 -2.39 -0.02 1.77 16 29 H 0.05 1.90 6.62 -2.39 -0.02 1.89 16 30 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 31 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 33 H 0.07 2.08 7.49 -2.39 -0.02 2.07 16 34 H 0.08 2.04 5.66 -2.38 -0.01 2.03 16 35 H 0.42 8.83 6.44 -96.74 -0.62 8.20 16 36 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.13 7.67 -2.39 -0.02 1.11 16 38 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.55 6.40 -2.39 -0.02 1.54 16 41 H 0.12 2.26 6.99 -2.39 -0.02 2.24 16 Total: -1.00 -71.36 328.83 -1.26 -72.62 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.41 Total: 14.42 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 3.50 Total: -39.27 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -0.69 Total: -81.76 kcal Atomic # 8 Polarization: -65.67 SS G_CDS: -6.23 Total: -71.90 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 61.04 SS G_CDS: -0.27 Total: 60.76 kcal Total: -71.36 -1.26 -72.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344998043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.460 kcal (2) G-P(sol) polarization free energy of solvation -71.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds