Wall clock time and date at job start Tue Mar 31 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34708 * 117.00462 * 2 1 4 4 O 1.21474 * 119.99584 * 359.97438 * 3 2 1 5 5 C 1.47741 * 120.00540 * 180.02562 * 3 2 1 6 6 C 1.39711 * 120.10454 * 0.27293 * 5 3 2 7 7 C 1.38011 * 120.00995 * 180.27840 * 6 5 3 8 8 C 1.38217 * 120.24565 * 359.44228 * 7 6 5 9 9 C 1.50698 * 119.88849 * 180.25455 * 8 7 6 10 10 C 1.52998 * 109.47587 * 295.09759 * 9 8 7 11 11 C 1.52999 * 109.47175 * 55.10242 * 9 8 7 12 12 C 1.39094 * 120.21789 * 0.28734 * 8 7 6 13 13 N 1.39575 * 120.00867 * 180.02562 * 12 8 7 14 14 C 1.34776 * 119.99941 * 214.36565 * 13 12 8 15 15 O 1.21749 * 120.00050 * 5.51216 * 14 13 12 16 16 C 1.46179 * 120.00127 * 185.52239 * 14 13 12 17 17 H 1.07996 * 119.99693 * 359.97438 * 16 14 13 18 18 C 1.40121 * 119.99996 * 179.97438 * 16 14 13 19 19 N 1.30641 * 119.99923 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00000 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46930 * 60.00052 * 20 18 16 22 22 H 1.48498 * 109.47065 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47163 * 300.00318 * 20 18 16 24 24 C 1.38780 * 119.98496 * 359.97438 * 12 8 7 25 25 H 1.09000 * 109.46785 * 300.00307 * 1 2 3 26 26 H 1.09000 * 109.46926 * 59.99875 * 1 2 3 27 27 H 1.08998 * 109.47196 * 179.97438 * 1 2 3 28 28 H 1.07993 * 119.99456 * 359.97438 * 6 5 3 29 29 H 1.08003 * 119.87813 * 179.72612 * 7 6 5 30 30 H 1.09004 * 109.47254 * 175.09516 * 9 8 7 31 31 H 1.08997 * 109.47210 * 59.99918 * 10 9 8 32 32 H 1.09004 * 109.47285 * 180.02562 * 10 9 8 33 33 H 1.08997 * 109.47142 * 299.99885 * 10 9 8 34 34 H 1.08998 * 109.47788 * 59.99346 * 11 9 8 35 35 H 1.08996 * 109.47331 * 179.97438 * 11 9 8 36 36 H 1.09011 * 109.46667 * 299.99427 * 11 9 8 37 37 H 0.96997 * 120.00161 * 34.35688 * 13 12 8 38 38 H 0.97006 * 119.99681 * 179.97438 * 19 18 16 39 39 H 1.08003 * 120.12560 * 179.97438 * 24 12 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5391 1.2776 -0.0006 6 6 4.3021 0.1073 -0.0069 7 6 5.6802 0.1817 -0.0016 8 6 6.3110 1.4116 -0.0017 9 6 7.8162 1.4835 -0.0017 10 6 8.3550 0.8969 1.3046 11 6 8.3651 0.6835 -1.1847 12 6 5.5610 2.5830 -0.0011 13 7 6.2025 3.8226 -0.0017 14 6 5.6571 4.8639 0.6575 15 8 4.6594 4.6999 1.3358 16 6 6.2632 6.1904 0.5581 17 1 7.1483 6.3358 -0.0434 18 6 5.6959 7.2731 1.2431 19 7 4.6255 7.0970 1.9710 20 14 6.4709 8.9680 1.1165 21 1 6.4768 9.4048 -0.3028 22 1 5.6866 9.9328 1.9285 23 1 7.8656 8.9137 1.6235 24 6 4.1746 2.5189 -0.0009 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.8135 -0.8558 -0.0109 29 1 6.2680 -0.7243 -0.0020 30 1 8.1303 2.5236 -0.0897 31 1 8.0410 -0.1432 1.3926 32 1 9.4438 0.9493 1.3047 33 1 7.9641 1.4669 2.1474 34 1 7.9813 1.1014 -2.1154 35 1 9.4537 0.7359 -1.1850 36 1 8.0510 -0.3567 -1.0968 37 1 7.0408 3.9346 -0.4765 38 1 4.2329 7.8465 2.4455 39 1 3.5900 3.4271 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346121214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:29 Heat of formation + Delta-G solvation = -108.476267 kcal Electronic energy + Delta-G solvation = -23133.122742 eV Core-core repulsion = 19619.429803 eV Total energy + Delta-G solvation = -3513.692939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.32684 -39.40016 -37.12398 -36.19851 -35.04686 -33.51276 -32.43895 -29.99702 -29.24444 -27.50762 -27.01635 -26.21783 -24.14012 -22.42517 -21.29298 -19.93914 -19.51097 -17.86109 -17.37003 -16.76646 -16.10479 -15.67659 -15.43464 -15.19122 -14.61456 -14.12780 -13.85929 -13.57404 -13.36649 -13.30029 -13.10405 -12.68633 -12.55501 -12.38644 -12.17179 -12.02344 -11.70361 -11.42896 -11.29744 -11.09375 -10.97894 -10.71413 -10.63399 -10.60211 -10.45635 -10.33804 -10.16046 -9.39991 -8.90846 -8.47084 -7.78972 -7.17293 -6.34800 -4.83131 1.12053 1.90800 2.88701 2.91628 3.09111 3.14045 3.16032 3.97896 4.14688 4.48475 4.54282 4.84296 4.98438 5.08094 5.17213 5.24791 5.33102 5.37519 5.50992 5.55689 5.61677 5.64681 5.71828 5.85917 5.92253 6.04249 6.08308 6.11103 6.29453 6.40401 6.42125 6.48722 6.76648 6.78969 6.97049 7.18107 7.28342 7.68270 7.97575 8.06442 8.12433 8.84102 9.17060 10.36934 10.56041 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.012126 B = 0.005532 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.530049 B = 5060.452896 C = 7079.755111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.508 3.492 4 O -0.499 6.499 5 C -0.115 4.115 6 C -0.107 4.107 7 C -0.110 4.110 8 C -0.099 4.099 9 C -0.056 4.056 10 C -0.139 4.139 11 C -0.142 4.142 12 C 0.185 3.815 13 N -0.697 5.697 14 C 0.541 3.459 15 O -0.556 6.556 16 C -0.538 4.538 17 H 0.072 0.928 18 C 0.087 3.913 19 N -0.757 5.757 20 Si 0.913 3.087 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.267 1.267 24 C -0.059 4.059 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.394 0.606 38 H 0.273 0.727 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.805 -13.987 -5.069 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.353 3.647 4 O -0.387 6.387 5 C -0.117 4.117 6 C -0.127 4.127 7 C -0.128 4.128 8 C -0.103 4.103 9 C -0.075 4.075 10 C -0.197 4.197 11 C -0.199 4.199 12 C 0.086 3.914 13 N -0.342 5.342 14 C 0.347 3.653 15 O -0.437 6.437 16 C -0.574 4.574 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.384 5.384 20 Si 0.737 3.263 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.080 4.080 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.229 0.771 38 H 0.084 0.916 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.709 -13.579 -4.434 14.386 hybrid contribution 0.486 0.969 -0.200 1.102 sum 2.194 -12.610 -4.634 13.612 Atomic orbital electron populations 1.23210 0.76700 1.03220 1.02595 1.86534 1.23000 1.33188 1.84909 1.21373 0.89419 0.81136 0.72785 1.90866 1.66712 1.35915 1.45156 1.18841 0.88253 0.94770 1.09820 1.21102 0.93659 0.97123 1.00824 1.20575 0.93771 0.96583 1.01904 1.19896 0.95184 0.92222 1.02949 1.20038 0.90717 1.00921 0.95821 1.21798 1.00181 1.00774 0.96912 1.21863 1.00328 1.00042 0.97675 1.17575 0.90985 0.86422 0.96384 1.44242 1.26499 1.08158 1.55303 1.18434 0.84501 0.83474 0.78857 1.90682 1.27029 1.83587 1.42415 1.20792 1.13759 0.91167 1.31657 0.91022 1.25742 0.93996 1.00462 0.93309 1.69981 1.15858 1.32141 1.20461 0.86341 0.79712 0.81143 0.79105 1.19104 1.20387 1.19133 1.21436 0.93711 0.97439 0.95453 0.91941 0.92045 0.88336 0.85423 0.85857 0.90237 0.92665 0.92642 0.92298 0.92576 0.92604 0.92517 0.77133 0.91602 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.47 9.81 -40.51 -0.40 -5.86 16 3 C 0.51 9.63 7.90 34.61 0.27 9.91 16 4 O -0.50 -11.10 16.13 -19.25 -0.31 -11.41 16 5 C -0.12 -2.19 5.87 -105.01 -0.62 -2.80 16 6 C -0.11 -1.65 9.62 -39.11 -0.38 -2.03 16 7 C -0.11 -1.58 8.72 -39.67 -0.35 -1.92 16 8 C -0.10 -1.60 4.81 -104.31 -0.50 -2.11 16 9 C -0.06 -0.75 3.02 -91.77 -0.28 -1.03 16 10 C -0.14 -1.72 9.05 37.16 0.34 -1.39 16 11 C -0.14 -1.51 8.95 37.16 0.33 -1.17 16 12 C 0.19 3.80 6.23 -83.82 -0.52 3.28 16 13 N -0.70 -15.29 4.90 -11.23 -0.05 -15.34 16 14 C 0.54 14.87 7.46 -13.07 -0.10 14.77 16 15 O -0.56 -17.48 12.78 5.14 0.07 -17.42 16 16 C -0.54 -14.56 9.54 -35.69 -0.34 -14.90 16 17 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 18 C 0.09 2.34 5.50 -17.35 -0.10 2.24 16 19 N -0.76 -22.19 11.82 55.55 0.66 -21.53 16 20 Si 0.91 19.52 29.56 -169.99 -5.02 14.50 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.06 -1.32 8.19 -38.92 -0.32 -1.64 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.13 1.64 7.60 -52.49 -0.40 1.24 16 29 H 0.12 1.38 7.07 -52.48 -0.37 1.01 16 30 H 0.08 1.13 6.02 -51.93 -0.31 0.81 16 31 H 0.05 0.61 7.68 -51.93 -0.40 0.21 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.54 7.12 -51.92 -0.37 0.18 16 37 H 0.39 7.36 7.12 -40.82 -0.29 7.06 16 38 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 39 H 0.15 4.01 6.08 -52.48 -0.32 3.70 16 LS Contribution 333.55 15.07 5.03 5.03 Total: -1.00 -34.30 333.55 -6.49 -40.78 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.97 Total: 8.56 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.48 Total: 2.69 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.60 Total: -36.87 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.64 Total: -34.69 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.30 -6.49 -40.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346121214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.693 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds