Wall clock time and date at job start Tue Mar 31 2020 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34708 * 117.00462 * 2 1 4 4 O 1.21474 * 119.99584 * 359.97438 * 3 2 1 5 5 C 1.47741 * 120.00540 * 180.02562 * 3 2 1 6 6 C 1.39711 * 120.10454 * 0.27293 * 5 3 2 7 7 C 1.38011 * 120.00995 * 180.27840 * 6 5 3 8 8 C 1.38217 * 120.24565 * 359.44228 * 7 6 5 9 9 C 1.50698 * 119.88849 * 180.25455 * 8 7 6 10 10 C 1.52998 * 109.47587 * 295.09759 * 9 8 7 11 11 C 1.52999 * 109.47175 * 55.10242 * 9 8 7 12 12 C 1.39094 * 120.21789 * 0.28734 * 8 7 6 13 13 N 1.39575 * 120.00867 * 180.02562 * 12 8 7 14 14 C 1.34776 * 119.99941 * 214.36565 * 13 12 8 15 15 O 1.21749 * 120.00050 * 5.51216 * 14 13 12 16 16 C 1.46179 * 120.00127 * 185.52239 * 14 13 12 17 17 H 1.07996 * 119.99693 * 359.97438 * 16 14 13 18 18 C 1.40121 * 119.99996 * 179.97438 * 16 14 13 19 19 N 1.30641 * 119.99923 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00000 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46930 * 60.00052 * 20 18 16 22 22 H 1.48498 * 109.47065 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47163 * 300.00318 * 20 18 16 24 24 C 1.38780 * 119.98496 * 359.97438 * 12 8 7 25 25 H 1.09000 * 109.46785 * 300.00307 * 1 2 3 26 26 H 1.09000 * 109.46926 * 59.99875 * 1 2 3 27 27 H 1.08998 * 109.47196 * 179.97438 * 1 2 3 28 28 H 1.07993 * 119.99456 * 359.97438 * 6 5 3 29 29 H 1.08003 * 119.87813 * 179.72612 * 7 6 5 30 30 H 1.09004 * 109.47254 * 175.09516 * 9 8 7 31 31 H 1.08997 * 109.47210 * 59.99918 * 10 9 8 32 32 H 1.09004 * 109.47285 * 180.02562 * 10 9 8 33 33 H 1.08997 * 109.47142 * 299.99885 * 10 9 8 34 34 H 1.08998 * 109.47788 * 59.99346 * 11 9 8 35 35 H 1.08996 * 109.47331 * 179.97438 * 11 9 8 36 36 H 1.09011 * 109.46667 * 299.99427 * 11 9 8 37 37 H 0.96997 * 120.00161 * 34.35688 * 13 12 8 38 38 H 0.97006 * 119.99681 * 179.97438 * 19 18 16 39 39 H 1.08003 * 120.12560 * 179.97438 * 24 12 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5391 1.2776 -0.0006 6 6 4.3021 0.1073 -0.0069 7 6 5.6802 0.1817 -0.0016 8 6 6.3110 1.4116 -0.0017 9 6 7.8162 1.4835 -0.0017 10 6 8.3550 0.8969 1.3046 11 6 8.3651 0.6835 -1.1847 12 6 5.5610 2.5830 -0.0011 13 7 6.2025 3.8226 -0.0017 14 6 5.6571 4.8639 0.6575 15 8 4.6594 4.6999 1.3358 16 6 6.2632 6.1904 0.5581 17 1 7.1483 6.3358 -0.0434 18 6 5.6959 7.2731 1.2431 19 7 4.6255 7.0970 1.9710 20 14 6.4709 8.9680 1.1165 21 1 6.4768 9.4048 -0.3028 22 1 5.6866 9.9328 1.9285 23 1 7.8656 8.9137 1.6235 24 6 4.1746 2.5189 -0.0009 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.8135 -0.8558 -0.0109 29 1 6.2680 -0.7243 -0.0020 30 1 8.1303 2.5236 -0.0897 31 1 8.0410 -0.1432 1.3926 32 1 9.4438 0.9493 1.3047 33 1 7.9641 1.4669 2.1474 34 1 7.9813 1.1014 -2.1154 35 1 9.4537 0.7359 -1.1850 36 1 8.0510 -0.3567 -1.0968 37 1 7.0408 3.9346 -0.4765 38 1 4.2329 7.8465 2.4455 39 1 3.5900 3.4271 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346121214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:28 Heat of formation + Delta-G solvation = -131.544065 kcal Electronic energy + Delta-G solvation = -23134.123036 eV Core-core repulsion = 19619.429803 eV Total energy + Delta-G solvation = -3514.693234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.78074 -40.90181 -38.95496 -37.58694 -36.27271 -35.34824 -34.51388 -31.30616 -30.87516 -28.71028 -28.12178 -27.89578 -25.44683 -24.01895 -22.63624 -21.68438 -20.79819 -19.62745 -18.97431 -18.24915 -17.57321 -17.43369 -16.88463 -16.60658 -16.14852 -15.80656 -15.23746 -14.84471 -14.63950 -14.58193 -14.49978 -14.36938 -14.16876 -13.65170 -13.28547 -13.22873 -13.09049 -12.86498 -12.80985 -12.75879 -12.56403 -12.11023 -11.99166 -11.94765 -11.87465 -11.61299 -11.48679 -11.11129 -10.88171 -10.03515 -9.75183 -8.84710 -8.38918 -6.97850 -0.32488 0.46225 1.37123 1.39252 1.45889 1.53304 1.61115 2.18881 2.35653 2.78792 2.90333 3.54265 3.63003 3.82586 3.87272 4.16777 4.27829 4.28951 4.32631 4.36999 4.42641 4.50575 4.64767 4.79770 4.91086 4.93548 4.97301 5.07740 5.12081 5.21246 5.22106 5.33241 5.34919 5.41862 5.48466 5.58947 5.74734 5.80320 6.12322 6.29365 6.64162 6.74939 7.29009 8.32850 8.54853 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.012126 B = 0.005532 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.530049 B = 5060.452896 C = 7079.755111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.509 3.491 4 O -0.548 6.548 5 C -0.135 4.135 6 C -0.080 4.080 7 C -0.097 4.097 8 C -0.079 4.079 9 C -0.060 4.060 10 C -0.137 4.137 11 C -0.135 4.135 12 C 0.148 3.852 13 N -0.689 5.689 14 C 0.527 3.473 15 O -0.609 6.609 16 C -0.565 4.565 17 H 0.095 0.905 18 C 0.028 3.972 19 N -0.816 5.816 20 Si 1.003 2.997 21 H -0.253 1.253 22 H -0.275 1.275 23 H -0.249 1.249 24 C -0.094 4.094 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.147 0.853 28 H 0.168 0.832 29 H 0.177 0.823 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.027 0.973 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.407 0.593 38 H 0.277 0.723 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.422 -16.995 -6.034 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.262 6.262 3 C 0.357 3.643 4 O -0.440 6.440 5 C -0.136 4.136 6 C -0.099 4.099 7 C -0.115 4.115 8 C -0.082 4.082 9 C -0.078 4.078 10 C -0.194 4.194 11 C -0.192 4.192 12 C 0.051 3.949 13 N -0.335 5.335 14 C 0.334 3.666 15 O -0.494 6.494 16 C -0.600 4.600 17 H 0.113 0.887 18 C -0.188 4.188 19 N -0.445 5.445 20 Si 0.821 3.179 21 H -0.177 1.177 22 H -0.200 1.200 23 H -0.173 1.173 24 C -0.116 4.116 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.165 0.835 28 H 0.185 0.815 29 H 0.194 0.806 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.245 0.755 38 H 0.087 0.913 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.361 -16.672 -5.439 18.071 hybrid contribution -0.374 1.666 0.068 1.709 sum 3.987 -15.006 -5.371 16.429 Atomic orbital electron populations 1.23632 0.74394 1.06239 1.02297 1.86506 1.25135 1.30609 1.83959 1.21516 0.89619 0.81535 0.71680 1.90842 1.67705 1.37790 1.47630 1.18955 0.88748 0.94916 1.11006 1.21566 0.94102 0.96972 0.97214 1.21156 0.93644 0.97420 0.99302 1.20321 0.96872 0.91244 0.99751 1.20170 0.88440 1.01119 0.98100 1.21798 1.01510 1.01335 0.94735 1.21835 1.01457 1.00386 0.95560 1.17817 0.90696 0.87149 0.99231 1.43687 1.26764 1.08111 1.54923 1.18804 0.83984 0.85085 0.78724 1.90642 1.29183 1.84820 1.44759 1.21377 1.14705 0.91601 1.32355 0.88655 1.27067 0.94056 1.05667 0.92022 1.70177 1.18194 1.33977 1.22150 0.84996 0.79021 0.74181 0.79684 1.17731 1.20027 1.17268 1.21077 0.94526 0.96808 0.99195 0.92672 0.92133 0.83482 0.81470 0.80590 0.91777 0.90409 0.90439 0.95352 0.93104 0.90679 0.90410 0.75523 0.91323 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.35 -10.13 9.81 -56.18 -0.55 -10.68 16 3 C 0.51 20.09 7.90 70.33 0.56 20.65 16 4 O -0.55 -26.46 16.13 19.92 0.32 -26.14 16 5 C -0.13 -5.25 5.87 -20.11 -0.12 -5.37 16 6 C -0.08 -2.21 9.62 22.57 0.22 -2.00 16 7 C -0.10 -2.39 8.72 22.21 0.19 -2.20 16 8 C -0.08 -2.43 4.81 -19.66 -0.09 -2.53 16 9 C -0.06 -1.44 3.02 -11.54 -0.03 -1.47 16 10 C -0.14 -2.93 9.05 71.98 0.65 -2.28 16 11 C -0.14 -2.26 8.95 71.98 0.64 -1.62 16 12 C 0.15 6.36 6.23 38.24 0.24 6.60 16 13 N -0.69 -32.08 4.90 -307.62 -1.51 -33.58 16 14 C 0.53 31.15 7.46 86.30 0.64 31.79 16 15 O -0.61 -41.83 12.78 -4.51 -0.06 -41.89 16 16 C -0.56 -31.92 9.54 24.79 0.24 -31.69 16 17 H 0.10 4.72 7.85 -2.91 -0.02 4.69 16 18 C 0.03 1.57 5.50 85.33 0.47 2.03 16 19 N -0.82 -50.86 11.82 21.85 0.26 -50.60 16 20 Si 1.00 40.82 29.56 68.60 2.03 42.85 16 21 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.25 -9.36 7.11 99.48 0.71 -8.66 16 24 C -0.09 -4.55 8.19 22.70 0.19 -4.36 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.17 3.39 7.60 -2.91 -0.02 3.37 16 29 H 0.18 2.62 7.07 -2.91 -0.02 2.60 16 30 H 0.06 1.75 6.02 -2.38 -0.01 1.74 16 31 H 0.08 1.31 7.68 -2.39 -0.02 1.30 16 32 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.00 7.12 -2.38 -0.02 0.98 16 37 H 0.41 15.90 7.12 -92.71 -0.66 15.24 16 38 H 0.28 15.69 8.29 -92.70 -0.77 14.92 16 39 H 0.09 5.51 6.08 -2.91 -0.02 5.49 16 Total: -1.00 -85.82 333.55 5.90 -79.91 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.42 Total: 30.78 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 4.99 Total: 9.35 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -1.25 Total: -84.18 kcal Atomic # 8 Polarization: -78.42 SS G_CDS: -0.29 Total: -78.71 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -85.82 5.90 -79.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346121214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.630 kcal (2) G-P(sol) polarization free energy of solvation -85.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds