Wall clock time and date at job start Tue Mar 31 2020 07:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47246 * 2 1 4 4 H 1.08999 * 109.71179 * 297.13602 * 3 2 1 5 5 C 1.53718 * 109.74545 * 57.90338 * 3 2 1 6 6 O 1.42962 * 109.14746 * 172.16412 * 5 3 2 7 7 C 1.42962 * 114.16624 * 297.28710 * 6 5 3 8 8 H 1.08994 * 109.52040 * 302.66127 * 7 6 5 9 9 C 1.53001 * 109.55201 * 182.52826 * 7 6 5 10 10 C 1.53299 * 109.22204 * 62.58679 * 7 6 5 11 11 N 1.47152 * 109.68163 * 176.59452 * 3 2 1 12 12 S 1.65595 * 120.98480 * 9.77117 * 11 3 2 13 13 O 1.42095 * 104.28318 * 163.59868 * 12 11 3 14 14 O 1.42102 * 104.27808 * 35.73792 * 12 11 3 15 15 C 1.81401 * 104.44840 * 279.67346 * 12 11 3 16 16 C 1.52995 * 109.47327 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.47404 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99784 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00378 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99979 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00293 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47332 * 89.99221 * 21 19 17 23 23 H 1.48504 * 109.46997 * 209.99808 * 21 19 17 24 24 H 1.48506 * 109.46827 * 329.99184 * 21 19 17 25 25 H 1.08996 * 109.47053 * 175.41124 * 1 2 3 26 26 H 1.09001 * 109.46940 * 295.41084 * 1 2 3 27 27 H 1.09000 * 109.47283 * 55.40153 * 1 2 3 28 28 H 1.09001 * 109.47087 * 240.00525 * 2 1 3 29 29 H 1.08998 * 109.47303 * 120.00247 * 2 1 3 30 30 H 1.09001 * 109.65420 * 52.20037 * 5 3 2 31 31 H 1.08997 * 109.48474 * 292.02801 * 5 3 2 32 32 H 1.09000 * 109.47474 * 300.23284 * 9 7 6 33 33 H 1.08997 * 109.47271 * 60.23612 * 9 7 6 34 34 H 1.09004 * 109.46765 * 180.23029 * 9 7 6 35 35 H 1.09003 * 109.68376 * 187.97415 * 10 7 6 36 36 H 1.08998 * 109.68327 * 67.41628 * 10 7 6 37 37 H 1.08998 * 109.47252 * 59.99053 * 15 12 11 38 38 H 1.09008 * 109.46869 * 299.99863 * 15 12 11 39 39 H 1.08996 * 109.47549 * 299.99907 * 16 15 12 40 40 H 1.09003 * 109.46939 * 59.99711 * 16 15 12 41 41 H 0.96994 * 119.99949 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7213 1.9451 -0.9132 5 6 1.4883 2.1884 1.2257 6 8 2.1133 3.4711 1.3145 7 6 3.5280 3.4202 1.5144 8 1 3.7478 2.8529 2.4187 9 6 4.0764 4.8415 1.6567 10 6 4.1838 2.7367 0.3091 11 7 3.5092 1.4487 0.0823 12 16 4.3782 0.0487 -0.0825 13 8 5.7056 0.4878 -0.3361 14 8 3.6565 -0.6997 -1.0512 15 6 4.2703 -0.7453 1.5449 16 6 5.0431 -2.0654 1.5206 17 6 4.9540 -2.7247 2.8728 18 1 4.4017 -2.2494 3.6700 19 6 5.5784 -3.9342 3.0926 20 7 6.2515 -4.5128 2.1221 21 14 5.4674 -4.7517 4.7685 22 1 4.2784 -5.6404 4.8080 23 1 6.6934 -5.5541 5.0101 24 1 5.3422 -3.7104 5.8199 25 1 -0.3633 -1.0243 -0.0822 26 1 -0.3633 0.4410 0.9283 27 1 -0.3634 0.5835 -0.8459 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7007 1.6166 2.1290 31 1 0.4109 2.3149 1.1197 32 1 3.8547 5.4087 0.7527 33 1 3.6097 5.3269 2.5138 34 1 5.1555 4.8013 1.8050 35 1 5.2408 2.5664 0.5139 36 1 4.0773 3.3674 -0.5734 37 1 3.2252 -0.9407 1.7853 38 1 4.6995 -0.0863 2.2998 39 1 4.6136 -2.7241 0.7659 40 1 6.0882 -1.8702 1.2801 41 1 6.6910 -5.3634 2.2768 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348159990.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:50 Heat of formation + Delta-G solvation = -142.955293 kcal Electronic energy + Delta-G solvation = -23057.557638 eV Core-core repulsion = 19677.813528 eV Total energy + Delta-G solvation = -3379.744111 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.65316 -38.56723 -37.17828 -36.54663 -35.95492 -34.85404 -33.19523 -32.38223 -28.47386 -27.73806 -27.05172 -24.93626 -23.77725 -22.47999 -21.74369 -20.05193 -18.98048 -18.17453 -17.84831 -17.46809 -17.13702 -16.56825 -16.31415 -15.95483 -15.92495 -15.62917 -15.22823 -14.55852 -14.48097 -14.05621 -13.77189 -13.65990 -13.35213 -13.27877 -13.16996 -13.13485 -12.99123 -12.84467 -12.72310 -12.54644 -12.28594 -12.23364 -12.14924 -12.08711 -11.82716 -11.49474 -11.38382 -11.15852 -10.80624 -10.66514 -9.78057 -8.28113 -6.42526 -0.80392 1.39763 1.41439 1.52451 1.57773 2.36281 2.73028 2.76879 3.05279 3.07469 3.42398 3.64297 3.85265 3.89675 4.00877 4.06018 4.10917 4.22602 4.33885 4.39850 4.45957 4.65979 4.66665 4.72558 4.78776 4.84454 4.90132 5.00432 5.12306 5.15145 5.21639 5.27161 5.28996 5.36275 5.46744 5.56387 5.65734 6.03059 6.19720 6.70600 7.27960 8.84218 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.005002 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.783321 B = 5596.122131 C = 5753.791494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.201 4.201 3 C 0.127 3.873 4 H 0.093 0.907 5 C 0.052 3.948 6 O -0.383 6.383 7 C 0.069 3.931 8 H 0.066 0.934 9 C -0.141 4.141 10 C 0.084 3.916 11 N -1.001 6.001 12 S 2.608 3.392 13 O -0.995 6.995 14 O -0.980 6.980 15 C -0.590 4.590 16 C 0.024 3.976 17 C -0.539 4.539 18 H 0.075 0.925 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.973 3.027 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.258 1.258 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.131 0.869 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.008 0.992 40 H 0.004 0.996 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.978 17.132 -0.190 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.240 4.240 3 C 0.022 3.978 4 H 0.111 0.889 5 C -0.026 4.026 6 O -0.302 6.302 7 C 0.010 3.990 8 H 0.084 0.916 9 C -0.198 4.198 10 C -0.041 4.041 11 N -0.840 5.840 12 S 2.708 3.292 13 O -0.985 6.985 14 O -0.970 6.970 15 C -0.722 4.722 16 C -0.015 4.015 17 C -0.578 4.578 18 H 0.093 0.907 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.797 3.203 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.182 1.182 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.126 0.874 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.026 0.974 40 H 0.023 0.977 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.511 16.911 -1.089 19.941 hybrid contribution 0.386 -1.200 1.021 1.622 sum -10.125 15.711 -0.068 18.691 Atomic orbital electron populations 1.21672 0.91667 1.02974 1.03349 1.22919 1.00710 0.94993 1.05348 1.21942 0.77437 0.97544 1.00926 0.88892 1.23300 0.99060 0.84225 0.96032 1.87924 1.20304 1.28552 1.93437 1.22618 0.81431 0.98951 0.95996 0.91636 1.21757 1.01708 0.92757 1.03614 1.22395 0.97711 0.83725 1.00285 1.57870 1.15914 1.21137 1.89039 1.04927 0.72504 0.73620 0.78133 1.93465 1.38925 1.80737 1.85408 1.93438 1.71743 1.72774 1.59027 1.30578 1.10756 1.09511 1.21335 1.18792 0.93933 0.89888 0.98837 1.21476 1.33507 1.05598 0.97180 0.90712 1.26099 0.94406 0.97923 1.01592 1.70099 1.34424 1.18137 1.34662 0.85325 0.77854 0.78546 0.78624 1.19473 1.20798 1.18197 0.92055 0.90677 0.90983 0.87433 0.91826 0.92144 0.85126 0.91184 0.90818 0.89419 0.88262 0.89451 0.83975 0.84481 0.97378 0.97738 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.38 71.98 0.68 -1.80 16 2 C -0.20 -5.07 4.21 30.59 0.13 -4.94 16 3 C 0.13 2.94 3.20 45.11 0.14 3.08 16 4 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 5 C 0.05 0.98 5.64 72.22 0.41 1.39 16 6 O -0.38 -8.09 10.39 -148.98 -1.55 -9.64 16 7 C 0.07 1.38 3.40 30.69 0.10 1.48 16 8 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 9 C -0.14 -2.06 9.57 71.98 0.69 -1.37 16 10 C 0.08 1.97 5.85 86.35 0.50 2.48 16 11 N -1.00 -27.78 3.26 -488.61 -1.59 -29.37 16 12 S 2.61 96.82 4.85 -56.49 -0.27 96.55 16 13 O -0.99 -42.54 16.50 -127.65 -2.11 -44.65 16 14 O -0.98 -40.42 14.16 -127.65 -1.81 -42.23 16 15 C -0.59 -22.75 5.89 71.98 0.42 -22.33 16 16 C 0.02 1.28 4.98 29.85 0.15 1.43 16 17 C -0.54 -29.72 9.11 25.60 0.23 -29.49 16 18 H 0.07 3.81 7.74 -2.91 -0.02 3.78 16 19 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 20 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 21 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.02 6.86 -2.39 -0.02 1.01 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.11 3.38 5.20 -5.68 -0.03 3.35 16 29 H 0.06 1.68 5.17 -2.39 -0.01 1.67 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 31 H 0.13 1.78 7.00 -2.39 -0.02 1.77 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.10 2.42 6.94 -2.39 -0.02 2.41 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.14 4.83 5.68 -2.39 -0.01 4.82 16 38 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -72.70 330.59 -0.10 -72.80 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.99 Total: 17.61 kcal Atomic # 6 Polarization: -53.62 SS G_CDS: 3.92 Total: -49.70 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -1.31 Total: -85.71 kcal Atomic # 8 Polarization: -91.06 SS G_CDS: -5.46 Total: -96.52 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 96.82 SS G_CDS: -0.27 Total: 96.55 kcal Total: -72.70 -0.10 -72.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348159990.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.152 kcal (2) G-P(sol) polarization free energy of solvation -72.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds