Wall clock time and date at job start Tue Mar 31 2020 07:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46425 * 2 1 4 4 H 1.08993 * 109.67725 * 65.18620 * 3 2 1 5 5 C 1.53293 * 109.68400 * 304.66482 * 3 2 1 6 6 O 1.42955 * 109.22458 * 187.94177 * 5 3 2 7 7 C 1.42970 * 114.16804 * 62.57818 * 6 5 3 8 8 H 1.08997 * 109.50774 * 57.40002 * 7 6 5 9 9 C 1.53000 * 109.51023 * 177.49965 * 7 6 5 10 10 C 1.53297 * 109.22152 * 297.42183 * 7 6 5 11 11 N 1.47150 * 108.38616 * 52.30102 * 10 7 6 12 12 S 1.65601 * 120.98221 * 129.43837 * 11 10 7 13 13 O 1.42100 * 104.27599 * 16.49367 * 12 11 10 14 14 O 1.42102 * 104.27680 * 144.35394 * 12 11 10 15 15 C 1.81408 * 104.45000 * 260.42248 * 12 11 10 16 16 C 1.52993 * 109.46837 * 179.97438 * 15 12 11 17 17 C 1.50697 * 109.47204 * 179.97438 * 16 15 12 18 18 H 1.08007 * 119.99739 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00539 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99967 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00406 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46866 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46955 * 120.00299 * 21 19 17 24 24 H 1.48501 * 109.47408 * 240.00518 * 21 19 17 25 25 H 1.09003 * 109.46917 * 186.09153 * 1 2 3 26 26 H 1.09000 * 109.47242 * 306.08986 * 1 2 3 27 27 H 1.09001 * 109.47385 * 66.09394 * 1 2 3 28 28 H 1.08998 * 109.46863 * 240.00394 * 2 1 3 29 29 H 1.08996 * 109.47435 * 119.99598 * 2 1 3 30 30 H 1.08998 * 109.50960 * 68.01635 * 5 3 2 31 31 H 1.09001 * 109.55460 * 307.89246 * 5 3 2 32 32 H 1.08999 * 109.47586 * 60.00428 * 9 7 6 33 33 H 1.09005 * 109.46982 * 299.99779 * 9 7 6 34 34 H 1.09006 * 109.46864 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.67687 * 172.02344 * 10 7 6 36 36 H 1.08996 * 109.68114 * 292.57825 * 10 7 6 37 37 H 1.08997 * 109.47307 * 300.00219 * 15 12 11 38 38 H 1.08998 * 109.46714 * 60.00375 * 15 12 11 39 39 H 1.08997 * 109.47436 * 300.00245 * 16 15 12 40 40 H 1.09003 * 109.47376 * 60.00375 * 16 15 12 41 41 H 0.96996 * 120.00059 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.7561 1.9322 0.9315 5 6 1.4379 2.2030 -1.1871 6 8 2.0586 3.4869 -1.2874 7 6 3.4638 3.4390 -1.5470 8 1 3.6453 2.8831 -2.4668 9 6 4.0048 4.8625 -1.6950 10 6 4.1695 2.7419 -0.3782 11 7 3.5050 1.4512 -0.1380 12 16 4.3799 0.0495 -0.0271 13 8 5.7156 0.4860 0.1838 14 8 3.6948 -0.7143 0.9561 15 6 4.2120 -0.7195 -1.6615 16 6 4.9868 -2.0385 -1.6864 17 6 4.8469 -2.6777 -3.0439 18 1 4.2640 -2.1914 -3.8122 19 6 5.4638 -3.8827 -3.3055 20 7 6.1740 -4.4746 -2.3701 21 14 5.2897 -4.6753 -4.9881 22 1 4.4454 -3.8151 -5.8555 23 1 6.6323 -4.8313 -5.6029 24 1 4.6534 -6.0093 -4.8434 25 1 -0.3633 -1.0219 0.1091 26 1 -0.3634 0.6053 0.8304 27 1 -0.3634 0.4164 -0.9395 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 0.3660 2.3278 -1.0337 31 1 1.6114 1.6421 -2.1055 32 1 3.8246 5.4173 -0.7742 33 1 3.4994 5.3590 -2.5233 34 1 5.0760 4.8252 -1.8933 35 1 5.2169 2.5745 -0.6291 36 1 4.1000 3.3624 0.5152 37 1 3.1589 -0.9123 -1.8659 38 1 4.6128 -0.0487 -2.4214 39 1 6.0398 -1.8453 -1.4822 40 1 4.5864 -2.7095 -0.9264 41 1 6.6083 -5.3221 -2.5542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348159995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:54 Heat of formation + Delta-G solvation = -119.904533 kcal Electronic energy + Delta-G solvation = -23061.701992 eV Core-core repulsion = 19682.957437 eV Total energy + Delta-G solvation = -3378.744555 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.71999 -37.08995 -35.75382 -35.34377 -34.04984 -33.79985 -31.57453 -31.18077 -27.61203 -26.25193 -25.59561 -24.05156 -22.02852 -21.51231 -20.56749 -18.64956 -17.34949 -16.87024 -16.55012 -16.26888 -15.63008 -15.18692 -14.87174 -14.79319 -14.67310 -14.56554 -13.74358 -13.38116 -13.07184 -12.64368 -12.57441 -12.53908 -12.48189 -11.87777 -11.82329 -11.75639 -11.64021 -11.48880 -11.31696 -11.28016 -11.11100 -11.00786 -10.67332 -10.50387 -10.34003 -10.27464 -9.97075 -9.69827 -9.23294 -8.68634 -8.54089 -6.16064 -4.21834 0.68193 2.87976 3.22627 3.30106 3.33272 3.59664 4.19121 4.34053 4.43430 4.48579 4.64238 4.83831 4.90800 4.95468 5.09622 5.19003 5.21669 5.23907 5.34875 5.43070 5.49181 5.52569 5.60181 5.63659 5.69574 5.72125 5.81018 5.97283 6.05616 6.09026 6.14479 6.44464 6.54318 6.60281 7.05570 7.25407 7.30938 7.76935 8.13321 8.81687 9.43287 10.94992 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.005004 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.206597 B = 5594.737372 C = 5745.235660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.192 4.192 3 C 0.129 3.871 4 H 0.083 0.917 5 C 0.051 3.949 6 O -0.377 6.377 7 C 0.070 3.930 8 H 0.065 0.935 9 C -0.144 4.144 10 C 0.092 3.908 11 N -1.008 6.008 12 S 2.590 3.410 13 O -0.965 6.965 14 O -0.958 6.958 15 C -0.593 4.593 16 C 0.029 3.971 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.281 1.281 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.132 0.868 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 15.466 2.385 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.230 4.230 3 C 0.023 3.977 4 H 0.101 0.899 5 C -0.027 4.027 6 O -0.296 6.296 7 C 0.011 3.989 8 H 0.083 0.917 9 C -0.202 4.202 10 C -0.033 4.033 11 N -0.844 5.844 12 S 2.690 3.310 13 O -0.955 6.955 14 O -0.948 6.948 15 C -0.726 4.726 16 C -0.010 4.010 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.726 3.274 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.207 1.207 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.150 0.850 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.744 15.229 3.271 17.863 hybrid contribution -0.158 -0.735 -1.610 1.777 sum -8.902 14.494 1.661 17.090 Atomic orbital electron populations 1.21683 0.94244 1.02562 1.01598 1.22891 0.98218 0.94882 1.07027 1.21623 0.79075 0.97521 0.99463 0.89882 1.23112 0.97629 0.84630 0.97355 1.87920 1.20981 1.28089 1.92629 1.22518 0.81866 0.97577 0.96936 0.91680 1.21740 1.01034 0.94334 1.03044 1.22112 0.97649 0.84567 0.98996 1.58185 1.15551 1.21773 1.88887 1.05754 0.73161 0.73144 0.78928 1.93515 1.35952 1.80135 1.85943 1.93459 1.73195 1.70699 1.57477 1.30681 1.10432 1.12043 1.19455 1.18963 0.94807 0.87166 1.00056 1.21021 1.32441 1.05501 0.96951 0.92033 1.25065 0.94921 0.97021 0.97416 1.69964 1.32407 1.17363 1.33069 0.86423 0.78016 0.79287 0.83627 1.19653 1.20759 1.20743 0.91761 0.92381 0.92734 0.90959 0.85017 0.87746 0.92406 0.91616 0.91553 0.90609 0.87898 0.90628 0.85994 0.86351 0.94903 0.94790 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.25 37.16 0.34 -1.09 16 2 C -0.19 -2.52 4.18 -26.72 -0.11 -2.63 16 3 C 0.13 1.62 3.21 -67.42 -0.22 1.40 16 4 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.05 0.56 5.54 37.31 0.21 0.77 16 6 O -0.38 -4.55 10.38 -35.23 -0.37 -4.92 16 7 C 0.07 0.78 3.40 -26.58 -0.09 0.69 16 8 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 9 C -0.14 -1.24 9.57 37.16 0.36 -0.89 16 10 C 0.09 1.16 5.85 -3.53 -0.02 1.14 16 11 N -1.01 -14.51 3.26 -106.03 -0.35 -14.86 16 12 S 2.59 47.36 4.84 -107.50 -0.52 46.84 16 13 O -0.96 -20.16 16.51 -57.54 -0.95 -21.11 16 14 O -0.96 -19.20 14.19 -57.54 -0.82 -20.02 16 15 C -0.59 -11.37 5.87 37.15 0.22 -11.15 16 16 C 0.03 0.74 4.98 -27.89 -0.14 0.60 16 17 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 18 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 21 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.47 6.92 -51.93 -0.36 0.11 16 28 H 0.07 0.99 5.03 -51.93 -0.26 0.73 16 29 H 0.13 2.03 5.40 -51.94 -0.28 1.75 16 30 H 0.10 0.93 7.01 -51.93 -0.36 0.56 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.30 6.95 -51.93 -0.36 0.94 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.12 2.10 5.68 -51.93 -0.30 1.81 16 38 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 330.49 15.07 4.98 4.98 Total: -1.00 -33.23 330.49 -8.70 -41.94 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.53 Total: 0.83 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 0.13 Total: -24.14 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.39 Total: -40.39 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -2.13 Total: -46.05 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 47.36 SS G_CDS: -0.52 Total: 46.84 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.23 -8.70 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348159995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.967 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds