Wall clock time and date at job start Tue Mar 31 2020 07:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46425 * 2 1 4 4 H 1.08993 * 109.67725 * 65.18620 * 3 2 1 5 5 C 1.53293 * 109.68400 * 304.66482 * 3 2 1 6 6 O 1.42955 * 109.22458 * 187.94177 * 5 3 2 7 7 C 1.42970 * 114.16804 * 62.57818 * 6 5 3 8 8 H 1.08997 * 109.50774 * 57.40002 * 7 6 5 9 9 C 1.53000 * 109.51023 * 177.49965 * 7 6 5 10 10 C 1.53297 * 109.22152 * 297.42183 * 7 6 5 11 11 N 1.47150 * 108.38616 * 52.30102 * 10 7 6 12 12 S 1.65601 * 120.98221 * 129.43837 * 11 10 7 13 13 O 1.42100 * 104.27599 * 16.49367 * 12 11 10 14 14 O 1.42102 * 104.27680 * 144.35394 * 12 11 10 15 15 C 1.81408 * 104.45000 * 260.42248 * 12 11 10 16 16 C 1.52993 * 109.46837 * 179.97438 * 15 12 11 17 17 C 1.50697 * 109.47204 * 179.97438 * 16 15 12 18 18 H 1.08007 * 119.99739 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00539 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99967 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00406 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46866 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46955 * 120.00299 * 21 19 17 24 24 H 1.48501 * 109.47408 * 240.00518 * 21 19 17 25 25 H 1.09003 * 109.46917 * 186.09153 * 1 2 3 26 26 H 1.09000 * 109.47242 * 306.08986 * 1 2 3 27 27 H 1.09001 * 109.47385 * 66.09394 * 1 2 3 28 28 H 1.08998 * 109.46863 * 240.00394 * 2 1 3 29 29 H 1.08996 * 109.47435 * 119.99598 * 2 1 3 30 30 H 1.08998 * 109.50960 * 68.01635 * 5 3 2 31 31 H 1.09001 * 109.55460 * 307.89246 * 5 3 2 32 32 H 1.08999 * 109.47586 * 60.00428 * 9 7 6 33 33 H 1.09005 * 109.46982 * 299.99779 * 9 7 6 34 34 H 1.09006 * 109.46864 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.67687 * 172.02344 * 10 7 6 36 36 H 1.08996 * 109.68114 * 292.57825 * 10 7 6 37 37 H 1.08997 * 109.47307 * 300.00219 * 15 12 11 38 38 H 1.08998 * 109.46714 * 60.00375 * 15 12 11 39 39 H 1.08997 * 109.47436 * 300.00245 * 16 15 12 40 40 H 1.09003 * 109.47376 * 60.00375 * 16 15 12 41 41 H 0.96996 * 120.00059 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.7561 1.9322 0.9315 5 6 1.4379 2.2030 -1.1871 6 8 2.0586 3.4869 -1.2874 7 6 3.4638 3.4390 -1.5470 8 1 3.6453 2.8831 -2.4668 9 6 4.0048 4.8625 -1.6950 10 6 4.1695 2.7419 -0.3782 11 7 3.5050 1.4512 -0.1380 12 16 4.3799 0.0495 -0.0271 13 8 5.7156 0.4860 0.1838 14 8 3.6948 -0.7143 0.9561 15 6 4.2120 -0.7195 -1.6615 16 6 4.9868 -2.0385 -1.6864 17 6 4.8469 -2.6777 -3.0439 18 1 4.2640 -2.1914 -3.8122 19 6 5.4638 -3.8827 -3.3055 20 7 6.1740 -4.4746 -2.3701 21 14 5.2897 -4.6753 -4.9881 22 1 4.4454 -3.8151 -5.8555 23 1 6.6323 -4.8313 -5.6029 24 1 4.6534 -6.0093 -4.8434 25 1 -0.3633 -1.0219 0.1091 26 1 -0.3634 0.6053 0.8304 27 1 -0.3634 0.4164 -0.9395 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 0.3660 2.3278 -1.0337 31 1 1.6114 1.6421 -2.1055 32 1 3.8246 5.4173 -0.7742 33 1 3.4994 5.3590 -2.5233 34 1 5.0760 4.8252 -1.8933 35 1 5.2169 2.5745 -0.6291 36 1 4.1000 3.3624 0.5152 37 1 3.1589 -0.9123 -1.8659 38 1 4.6128 -0.0487 -2.4214 39 1 6.0398 -1.8453 -1.4822 40 1 4.5864 -2.7095 -0.9264 41 1 6.6083 -5.3221 -2.5542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348159995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:54 Heat of formation + Delta-G solvation = -143.744296 kcal Electronic energy + Delta-G solvation = -23062.735762 eV Core-core repulsion = 19682.957437 eV Total energy + Delta-G solvation = -3379.778324 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.67133 -38.55805 -37.17242 -36.55699 -35.95750 -34.87220 -33.19834 -32.38020 -28.47192 -27.74315 -27.06279 -24.95285 -23.77806 -22.47996 -21.73174 -20.04573 -18.98436 -18.17594 -17.84877 -17.48097 -17.13808 -16.56759 -16.31346 -15.93563 -15.93186 -15.62822 -15.23127 -14.56294 -14.48734 -14.03424 -13.76969 -13.66722 -13.35407 -13.27534 -13.17301 -13.13591 -13.00492 -12.84803 -12.72734 -12.54185 -12.28652 -12.24254 -12.15051 -12.07793 -11.82112 -11.49086 -11.37865 -11.17794 -10.81806 -10.67586 -9.78385 -8.28414 -6.42725 -0.80405 1.39765 1.40149 1.53357 1.57874 2.36069 2.73502 2.76865 3.05100 3.07682 3.41956 3.64621 3.84683 3.89239 4.00749 4.05956 4.10854 4.22554 4.33883 4.39072 4.45908 4.65570 4.66627 4.72434 4.78591 4.84286 4.89768 5.00222 5.12359 5.14869 5.21486 5.27285 5.28521 5.36166 5.45756 5.56035 5.65760 6.02918 6.19685 6.70660 7.27821 8.84141 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.005004 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.206597 B = 5594.737372 C = 5745.235660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.196 4.196 3 C 0.126 3.874 4 H 0.093 0.907 5 C 0.052 3.948 6 O -0.383 6.383 7 C 0.069 3.931 8 H 0.066 0.934 9 C -0.141 4.141 10 C 0.084 3.916 11 N -1.000 6.000 12 S 2.608 3.392 13 O -0.995 6.995 14 O -0.980 6.980 15 C -0.590 4.590 16 C 0.024 3.976 17 C -0.537 4.537 18 H 0.075 0.925 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.973 3.027 22 H -0.256 1.256 23 H -0.278 1.278 24 H -0.277 1.277 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.132 0.868 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.004 0.996 40 H 0.008 0.992 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.022 17.137 0.822 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.234 4.234 3 C 0.021 3.979 4 H 0.111 0.889 5 C -0.026 4.026 6 O -0.302 6.302 7 C 0.010 3.990 8 H 0.084 0.916 9 C -0.198 4.198 10 C -0.041 4.041 11 N -0.839 5.839 12 S 2.708 3.292 13 O -0.985 6.985 14 O -0.970 6.970 15 C -0.722 4.722 16 C -0.015 4.015 17 C -0.576 4.576 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.574 5.574 21 Si 0.797 3.203 22 H -0.179 1.179 23 H -0.203 1.203 24 H -0.203 1.203 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.149 0.851 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.023 0.977 40 H 0.026 0.974 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.529 16.904 1.701 19.988 hybrid contribution 0.373 -1.195 -1.046 1.631 sum -10.156 15.709 0.655 18.718 Atomic orbital electron populations 1.21692 0.91651 1.03030 1.03392 1.22846 1.00616 0.94889 1.05099 1.21858 0.77534 0.97495 1.01012 0.88897 1.23229 0.98856 0.84118 0.96431 1.87927 1.21268 1.28494 1.92529 1.22623 0.81513 0.98888 0.95989 0.91624 1.21759 1.01769 0.92715 1.03595 1.22390 0.97671 0.83601 1.00449 1.57879 1.16462 1.20957 1.88641 1.04934 0.72565 0.73576 0.78124 1.93467 1.38101 1.80832 1.86139 1.93459 1.73415 1.72061 1.58066 1.30584 1.10796 1.09406 1.21426 1.18796 0.93947 0.89877 0.98862 1.21503 1.32297 1.05916 0.97920 0.90714 1.26102 0.94425 0.97784 1.01740 1.70106 1.33631 1.18000 1.35616 0.85274 0.78275 0.78317 0.78455 1.17943 1.20337 1.20259 0.92041 0.90828 0.90698 0.91983 0.87759 0.85063 0.92171 0.91183 0.90816 0.89422 0.88270 0.89440 0.83976 0.84476 0.97725 0.97382 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.25 71.98 0.67 -1.81 16 2 C -0.20 -4.93 4.18 30.60 0.13 -4.80 16 3 C 0.13 2.93 3.21 44.97 0.14 3.07 16 4 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 5 C 0.05 0.98 5.54 72.08 0.40 1.37 16 6 O -0.38 -8.08 10.38 -148.98 -1.55 -9.63 16 7 C 0.07 1.38 3.40 30.69 0.10 1.48 16 8 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 9 C -0.14 -2.06 9.57 71.98 0.69 -1.37 16 10 C 0.08 1.98 5.85 86.35 0.50 2.48 16 11 N -1.00 -27.80 3.26 -489.37 -1.60 -29.39 16 12 S 2.61 96.92 4.84 -56.49 -0.27 96.65 16 13 O -0.99 -42.58 16.51 -127.65 -2.11 -44.69 16 14 O -0.98 -40.49 14.19 -127.65 -1.81 -42.30 16 15 C -0.59 -22.78 5.87 71.98 0.42 -22.36 16 16 C 0.02 1.26 4.98 29.84 0.15 1.41 16 17 C -0.54 -29.66 9.11 25.60 0.23 -29.42 16 18 H 0.07 3.82 7.74 -2.91 -0.02 3.79 16 19 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 20 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 21 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.03 6.92 -2.39 -0.02 1.01 16 28 H 0.06 1.65 5.03 -2.39 -0.01 1.64 16 29 H 0.10 3.26 5.40 -2.45 -0.01 3.24 16 30 H 0.13 1.78 7.01 -2.39 -0.02 1.77 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.10 2.42 6.95 -2.39 -0.02 2.40 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.14 4.84 5.68 -2.39 -0.01 4.83 16 38 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 39 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -72.84 330.49 -0.12 -72.96 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 1.01 Total: 17.37 kcal Atomic # 6 Polarization: -53.51 SS G_CDS: 3.90 Total: -49.60 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -1.31 Total: -85.74 kcal Atomic # 8 Polarization: -91.15 SS G_CDS: -5.47 Total: -96.62 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 96.92 SS G_CDS: -0.27 Total: 96.65 kcal Total: -72.84 -0.12 -72.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348159995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.787 kcal (2) G-P(sol) polarization free energy of solvation -72.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds