Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.45253 * 2 1 4 4 N 1.46498 * 109.47089 * 57.39424 * 3 2 1 5 5 S 1.65602 * 119.99612 * 164.71987 * 4 3 2 6 6 O 1.42109 * 104.27511 * 181.34803 * 5 4 3 7 7 O 1.42098 * 104.28120 * 309.20801 * 5 4 3 8 8 C 1.81394 * 104.44973 * 65.28269 * 5 4 3 9 9 C 1.53003 * 109.47387 * 179.97438 * 8 5 4 10 10 C 1.53002 * 109.47130 * 179.97438 * 9 8 5 11 11 C 1.50692 * 109.47012 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00112 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00231 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99857 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00269 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47241 * 60.00170 * 15 13 11 17 17 H 1.48497 * 109.47563 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47390 * 300.00100 * 15 13 11 19 19 C 1.54510 * 110.50970 * 237.39623 * 2 1 3 20 20 C 1.54478 * 104.06376 * 241.21217 * 19 2 1 21 21 O 1.44433 * 104.80065 * 23.98032 * 20 19 2 22 22 C 1.44423 * 105.27372 * 319.48837 * 21 20 19 23 23 H 1.08999 * 109.47306 * 60.70182 * 1 2 3 24 24 H 1.09007 * 109.46589 * 180.69800 * 1 2 3 25 25 H 1.08997 * 109.47281 * 300.69609 * 1 2 3 26 26 H 1.08996 * 109.47377 * 297.39582 * 3 2 1 27 27 H 1.08999 * 109.46886 * 177.39720 * 3 2 1 28 28 H 0.97001 * 120.00384 * 345.00465 * 4 3 2 29 29 H 1.09009 * 109.47044 * 299.99503 * 8 5 4 30 30 H 1.09001 * 109.47747 * 59.99183 * 8 5 4 31 31 H 1.08994 * 109.46789 * 299.99279 * 9 8 5 32 32 H 1.08993 * 109.47045 * 59.99537 * 9 8 5 33 33 H 1.09003 * 109.47270 * 300.00013 * 10 9 8 34 34 H 1.09000 * 109.46896 * 60.00012 * 10 9 8 35 35 H 0.96993 * 120.00008 * 179.97438 * 14 13 11 36 36 H 1.08996 * 110.51634 * 359.86101 * 19 2 1 37 37 H 1.09003 * 110.50846 * 122.43090 * 19 2 1 38 38 H 1.08998 * 110.37382 * 142.81042 * 20 19 2 39 39 H 1.08997 * 110.37493 * 265.03956 * 20 19 2 40 40 H 1.08998 * 110.37199 * 281.67237 * 22 21 20 41 41 H 1.09003 * 110.36817 * 159.34228 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0647 1.4336 0.0000 4 7 1.5380 2.1512 1.1635 5 16 2.2273 3.5808 1.6363 6 8 1.4911 3.9597 2.7913 7 8 3.6162 3.2911 1.7151 8 6 1.8915 4.7203 0.2654 9 6 2.4853 6.0934 0.5864 10 6 2.2026 7.0543 -0.5702 11 6 2.7870 8.4068 -0.2538 12 1 3.3083 8.5651 0.6788 13 6 2.6571 9.4420 -1.1552 14 7 2.0227 9.2491 -2.2910 15 14 3.3821 11.1183 -0.7634 16 1 4.8492 10.9908 -0.5726 17 1 3.1087 12.0507 -1.8863 18 1 2.7652 11.6460 0.4802 19 6 2.0714 -0.7798 -1.2191 20 6 2.8788 -1.9393 -0.5947 21 8 2.3120 -2.1165 0.7219 22 6 2.0743 -0.7807 1.2168 23 1 -0.3634 0.5029 -0.8962 24 1 -0.3633 -1.0277 0.0125 25 1 -0.3634 0.5246 0.8836 26 1 1.7486 1.9392 -0.9124 27 1 3.1535 1.4152 0.0467 28 1 0.7882 1.7869 1.6595 29 1 2.3434 4.3331 -0.6479 30 1 0.8145 4.8141 0.1263 31 1 2.0331 6.4803 1.4995 32 1 3.5623 5.9998 0.7257 33 1 2.6551 6.6671 -1.4832 34 1 1.1257 7.1478 -0.7098 35 1 1.9310 9.9774 -2.9250 36 1 1.2491 -1.1674 -1.8205 37 1 2.7180 -0.1432 -1.8231 38 1 2.7576 -2.8473 -1.1853 39 1 3.9331 -1.6721 -0.5229 40 1 3.0049 -0.3351 1.5682 41 1 1.3351 -0.7987 2.0176 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354534611.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = -168.685883 kcal Electronic energy + Delta-G solvation = -21681.385625 eV Core-core repulsion = 18300.525752 eV Total energy + Delta-G solvation = -3380.859873 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.86235 -38.19076 -37.10278 -36.90083 -36.45890 -34.15941 -33.47466 -30.56622 -29.64405 -27.72699 -26.36026 -25.61654 -23.50392 -22.40765 -20.53064 -20.31924 -18.72976 -18.52153 -17.78025 -17.15853 -16.93988 -16.64596 -16.47750 -16.16511 -15.91202 -15.46792 -15.14585 -14.50009 -14.39939 -14.10409 -14.03317 -13.51628 -13.47097 -13.21976 -13.14474 -13.01793 -12.90158 -12.84526 -12.73135 -12.64228 -12.30356 -12.15580 -11.85872 -11.76666 -11.73352 -11.54405 -11.38015 -11.10643 -10.67629 -10.56906 -10.34877 -8.22760 -6.33605 -0.72905 1.40399 1.42607 1.50567 1.79391 2.39849 2.76356 3.02034 3.10851 3.24686 3.49537 3.70115 3.76145 3.80944 3.95309 4.13397 4.23733 4.33169 4.40113 4.43173 4.63084 4.67378 4.71677 4.75621 4.83979 4.88160 4.93795 4.98000 5.05102 5.07974 5.13629 5.23706 5.36761 5.45595 5.63734 5.79702 5.85869 6.08885 6.20061 6.81986 7.35698 8.88461 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029604 B = 0.003113 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.578795 B = 8992.115411 C = 9379.848500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 C 0.117 3.883 4 N -1.109 6.109 5 S 2.631 3.369 6 O -0.993 6.993 7 O -0.991 6.991 8 C -0.608 4.608 9 C -0.108 4.108 10 C 0.032 3.968 11 C -0.554 4.554 12 H 0.059 0.941 13 C 0.004 3.996 14 N -0.929 5.929 15 Si 0.961 3.039 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.143 4.143 20 C 0.036 3.964 21 O -0.398 6.398 22 C 0.046 3.954 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.424 0.576 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.004 0.996 34 H 0.003 0.997 35 H 0.265 0.735 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 -22.302 1.349 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.009 4.009 4 N -0.872 5.872 5 S 2.727 3.273 6 O -0.984 6.984 7 O -0.980 6.980 8 C -0.739 4.739 9 C -0.147 4.147 10 C -0.007 4.007 11 C -0.592 4.592 12 H 0.078 0.922 13 C -0.195 4.195 14 N -0.569 5.569 15 Si 0.786 3.214 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.182 4.182 20 C -0.041 4.041 21 O -0.317 6.317 22 C -0.031 4.031 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.262 0.738 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.023 0.977 34 H 0.021 0.979 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.237 -22.230 2.032 22.434 hybrid contribution -0.213 1.198 -0.476 1.306 sum -2.450 -21.032 1.555 21.232 Atomic orbital electron populations 1.21876 0.91954 1.02642 1.03110 1.22084 0.97964 0.93715 0.95976 1.21673 0.99145 0.92051 0.88047 1.55348 1.49815 1.39085 1.42979 1.04157 0.73344 0.74429 0.75420 1.93538 1.73593 1.83552 1.47686 1.93532 1.34287 1.83415 1.86799 1.30489 1.12471 1.10806 1.20124 1.21316 1.00318 0.92312 1.00749 1.18953 0.95797 0.92867 0.93050 1.21730 1.36226 0.97110 1.04178 0.92237 1.25916 0.95573 1.03166 0.94806 1.70054 1.43251 1.33978 1.09626 0.85554 0.79192 0.78691 0.77975 1.19237 1.20615 1.19298 1.23072 1.01218 0.96907 0.96963 1.23611 0.97226 0.99898 0.83332 1.89098 1.83426 1.26798 1.32413 1.23649 1.00410 0.82285 0.96718 0.90883 0.91814 0.91791 0.88826 0.90221 0.73814 0.83446 0.83478 0.91712 0.91562 0.97719 0.97880 0.92618 0.88902 0.88650 0.87786 0.91945 0.92532 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.10 71.98 0.58 -0.93 16 2 C -0.10 -1.24 0.78 -51.17 -0.04 -1.28 16 3 C 0.12 1.71 4.79 86.38 0.41 2.12 16 4 N -1.11 -19.54 5.53 -187.50 -1.04 -20.58 16 5 S 2.63 69.86 5.46 -56.49 -0.31 69.55 16 6 O -0.99 -32.85 18.08 -127.65 -2.31 -35.16 16 7 O -0.99 -32.44 17.48 -127.65 -2.23 -34.68 16 8 C -0.61 -16.95 6.08 71.98 0.44 -16.51 16 9 C -0.11 -4.26 5.16 30.60 0.16 -4.10 16 10 C 0.03 1.60 4.97 29.85 0.15 1.75 16 11 C -0.55 -31.26 9.11 25.60 0.23 -31.02 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 13 C 0.00 0.21 5.46 84.66 0.46 0.67 16 14 N -0.93 -55.16 13.29 21.45 0.28 -54.88 16 15 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 C -0.14 -1.53 6.38 31.61 0.20 -1.33 16 20 C 0.04 0.47 7.63 72.48 0.55 1.03 16 21 O -0.40 -7.67 11.65 -148.98 -1.74 -9.40 16 22 C 0.05 0.77 6.52 72.48 0.47 1.24 16 23 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.06 0.65 6.52 -2.39 -0.02 0.63 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 1.28 7.62 -2.39 -0.02 1.26 16 28 H 0.42 6.06 6.94 -96.74 -0.67 5.39 16 29 H 0.15 3.46 8.14 -2.39 -0.02 3.44 16 30 H 0.15 3.57 8.14 -2.39 -0.02 3.56 16 31 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.09 0.81 7.73 -2.39 -0.02 0.79 16 37 H 0.09 0.81 7.73 -2.39 -0.02 0.79 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 1.04 7.83 -2.39 -0.02 1.03 16 41 H 0.10 1.46 7.88 -2.39 -0.02 1.44 16 Total: -1.00 -75.03 345.20 -1.35 -76.38 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.33 Total: 11.27 kcal Atomic # 6 Polarization: -51.98 SS G_CDS: 3.62 Total: -48.35 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -0.75 Total: -75.45 kcal Atomic # 8 Polarization: -72.97 SS G_CDS: -6.28 Total: -79.24 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 69.86 SS G_CDS: -0.31 Total: 69.55 kcal Total: -75.03 -1.35 -76.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354534611.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.301 kcal (2) G-P(sol) polarization free energy of solvation -75.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds