Wall clock time and date at job start Tue Mar 31 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.52738 * 2 1 4 4 S 1.65602 * 119.99697 * 37.83440 * 3 2 1 5 5 O 1.42100 * 104.27876 * 304.30696 * 4 3 2 6 6 O 1.42094 * 104.27640 * 176.45044 * 4 3 2 7 7 C 1.81403 * 104.45107 * 60.38250 * 4 3 2 8 8 C 1.53001 * 109.47220 * 171.55462 * 7 4 3 9 9 C 1.53003 * 109.46855 * 179.97438 * 8 7 4 10 10 C 1.50696 * 109.46627 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00410 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99946 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99649 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00192 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47142 * 179.97438 * 14 12 10 16 16 H 1.48498 * 109.47425 * 300.00069 * 14 12 10 17 17 H 1.48502 * 109.47313 * 59.99890 * 14 12 10 18 18 C 1.53184 * 109.56966 * 120.15753 * 2 1 3 19 19 C 1.53184 * 109.03076 * 176.91446 * 18 2 1 20 20 C 1.53089 * 109.16541 * 303.01913 * 19 18 2 21 21 O 1.42903 * 109.41591 * 57.61169 * 20 19 18 22 22 C 1.42906 * 114.09504 * 298.83915 * 21 20 19 23 23 H 1.08997 * 109.46597 * 53.45120 * 1 2 3 24 24 H 1.08991 * 109.47456 * 173.45652 * 1 2 3 25 25 H 1.09003 * 109.46906 * 293.45887 * 1 2 3 26 26 H 0.96991 * 120.00483 * 217.83637 * 3 2 1 27 27 H 1.09003 * 109.47132 * 51.54885 * 7 4 3 28 28 H 1.09007 * 109.46725 * 291.55250 * 7 4 3 29 29 H 1.08997 * 109.47183 * 59.99876 * 8 7 4 30 30 H 1.08995 * 109.46503 * 299.99914 * 8 7 4 31 31 H 1.08997 * 109.47197 * 60.00042 * 9 8 7 32 32 H 1.08998 * 109.47141 * 299.99970 * 9 8 7 33 33 H 0.97001 * 119.99972 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.54582 * 296.78181 * 18 2 1 35 35 H 1.08998 * 109.54561 * 57.05441 * 18 2 1 36 36 H 1.09002 * 109.51671 * 183.11280 * 19 18 2 37 37 H 1.08992 * 109.52231 * 62.92791 * 19 18 2 38 38 H 1.09004 * 109.47656 * 297.62896 * 20 19 18 39 39 H 1.09001 * 109.49054 * 177.60382 * 20 19 18 40 40 H 1.08994 * 109.48378 * 301.17725 * 22 21 20 41 41 H 1.08997 * 109.48955 * 181.14670 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3807 0.0000 4 16 1.2289 2.5397 0.8797 5 8 -0.1096 2.4870 0.4055 6 8 2.0202 3.7078 0.7117 7 6 1.3212 1.9493 2.5925 8 6 0.8071 3.0388 3.5358 9 6 0.8844 2.5405 4.9804 10 6 0.3787 3.6138 5.9095 11 1 0.0368 4.5570 5.5098 12 6 0.3534 3.3920 7.2702 13 7 0.7702 2.2436 7.7570 14 14 -0.2727 4.7226 8.4220 15 1 -0.1979 4.2390 9.8240 16 1 0.5636 5.9405 8.2726 17 1 -1.6824 5.0459 8.0850 18 6 2.0431 -0.7251 1.2480 19 6 3.5729 -0.7856 1.1970 20 6 4.0056 -1.4795 -0.0972 21 8 3.4695 -0.7724 -1.2174 22 6 2.0416 -0.7243 -1.2480 23 1 -0.3632 0.6120 -0.8256 24 1 -0.3634 -1.0209 -0.1171 25 1 -0.3633 0.4091 0.9428 26 1 2.8070 1.6161 -0.5152 27 1 2.3560 1.7128 2.8401 28 1 0.7079 1.0548 2.7020 29 1 -0.2277 3.2751 3.2883 30 1 1.4204 3.9331 3.4262 31 1 1.9191 2.3038 5.2283 32 1 0.2709 1.6462 5.0896 33 1 0.7521 2.0873 8.7142 34 1 1.7292 -0.1827 2.1398 35 1 1.6389 -1.7370 1.2738 36 1 3.9439 -1.3484 2.0536 37 1 3.9784 0.2258 1.2212 38 1 3.6336 -2.5041 -0.1022 39 1 5.0938 -1.4876 -0.1593 40 1 1.6440 -1.7389 -1.2680 41 1 1.7148 -0.1882 -2.1390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357423262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:29 Heat of formation + Delta-G solvation = -135.478212 kcal Electronic energy + Delta-G solvation = -22699.510666 eV Core-core repulsion = 19320.090786 eV Total energy + Delta-G solvation = -3379.419880 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.15653 -37.03428 -35.98928 -35.65572 -34.72175 -32.73138 -32.16624 -30.63426 -27.91632 -27.20540 -25.46797 -23.67188 -22.50255 -20.88808 -20.20801 -18.89554 -17.62937 -16.82281 -16.55883 -16.36942 -15.76428 -15.68147 -15.16722 -14.90990 -14.60086 -14.47988 -14.18662 -13.22078 -13.13679 -12.87245 -12.55876 -12.42461 -12.35757 -12.16589 -11.84362 -11.79728 -11.70838 -11.41165 -11.31298 -11.17355 -11.01738 -10.90676 -10.84872 -10.61062 -10.40741 -9.97727 -9.85634 -9.53332 -9.33348 -9.09529 -8.41759 -6.07093 -4.10087 0.49748 2.82594 3.31279 3.35143 3.38451 3.61272 3.95129 4.27810 4.37972 4.41886 4.52962 4.55086 4.66963 4.88613 4.94868 5.13150 5.15510 5.18939 5.28981 5.29498 5.37437 5.41877 5.52752 5.60913 5.71736 5.77534 5.89020 5.99496 6.09645 6.21092 6.26247 6.43945 6.84797 6.87288 7.02055 7.54784 7.64937 7.90767 8.31486 8.95855 9.54661 11.04081 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.004071 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.750295 B = 6875.781156 C = 7441.584145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.145 3.855 3 N -1.108 6.108 4 S 2.600 3.400 5 O -0.961 6.961 6 O -0.965 6.965 7 C -0.614 4.614 8 C -0.105 4.105 9 C 0.032 3.968 10 C -0.527 4.527 11 H 0.057 0.943 12 C 0.059 3.941 13 N -0.896 5.896 14 Si 0.894 3.106 15 H -0.287 1.287 16 H -0.276 1.276 17 H -0.276 1.276 18 C -0.157 4.157 19 C -0.156 4.156 20 C 0.059 3.941 21 O -0.379 6.379 22 C 0.067 3.933 23 H 0.085 0.915 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.418 0.582 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.262 0.738 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 -10.368 -16.972 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.056 3.944 3 N -0.866 5.866 4 S 2.696 3.304 5 O -0.951 6.951 6 O -0.955 6.955 7 C -0.745 4.745 8 C -0.144 4.144 9 C -0.006 4.006 10 C -0.565 4.565 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.722 3.278 15 H -0.212 1.212 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.195 4.195 19 C -0.194 4.194 20 C -0.018 4.018 21 O -0.297 6.297 22 C -0.011 4.011 23 H 0.104 0.896 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.253 0.747 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.832 -9.645 -17.243 20.125 hybrid contribution 0.118 0.050 1.331 1.337 sum 3.950 -9.596 -15.912 18.996 Atomic orbital electron populations 1.22510 0.92127 1.03300 1.05417 1.20799 0.94742 0.82142 0.96763 1.55664 1.45289 1.20641 1.65053 1.05293 0.74311 0.73370 0.77409 1.93599 1.36914 1.86246 1.78333 1.93569 1.70332 1.45871 1.85768 1.30805 1.10921 1.11301 1.21510 1.21499 1.00096 0.94676 0.98148 1.19047 0.97637 0.96684 0.87281 1.21217 1.42865 1.00934 0.91516 0.92435 1.25010 0.95287 0.95636 0.98361 1.69944 1.47170 1.23229 1.13114 0.86617 0.79532 0.81999 0.79651 1.21242 1.20108 1.20119 1.22504 0.96426 1.01986 0.98611 1.22159 0.96014 1.02686 0.98524 1.22629 0.99096 0.94472 0.85577 1.87946 1.19858 1.76426 1.45494 1.22828 0.81372 0.99671 0.97250 0.89579 0.91031 0.90861 0.74703 0.85259 0.85233 0.91809 0.91397 0.96159 0.96183 0.92853 0.89529 0.90186 0.90358 0.90558 0.93117 0.88814 0.91789 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 7.02 37.16 0.26 -1.53 16 2 C 0.15 1.41 0.78 -131.67 -0.10 1.30 16 3 N -1.11 -12.50 4.79 0.65 0.00 -12.49 16 4 S 2.60 38.50 5.01 -107.50 -0.54 37.96 16 5 O -0.96 -16.06 14.42 -57.54 -0.83 -16.89 16 6 O -0.97 -17.53 18.08 -57.54 -1.04 -18.57 16 7 C -0.61 -9.36 4.29 37.16 0.16 -9.20 16 8 C -0.10 -2.11 5.16 -26.73 -0.14 -2.25 16 9 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 10 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 14 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.16 -1.44 4.80 -26.54 -0.13 -1.56 16 19 C -0.16 -1.35 5.97 -26.59 -0.16 -1.51 16 20 C 0.06 0.46 6.84 37.20 0.25 0.72 16 21 O -0.38 -3.63 10.39 -35.23 -0.37 -3.99 16 22 C 0.07 0.56 5.67 37.21 0.21 0.77 16 23 H 0.09 0.96 7.31 -51.93 -0.38 0.58 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.84 5.74 -51.93 -0.30 0.54 16 26 H 0.42 4.36 8.38 -34.47 -0.29 4.07 16 27 H 0.13 1.77 7.95 -51.92 -0.41 1.36 16 28 H 0.13 1.75 5.73 -51.92 -0.30 1.46 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.09 0.88 4.30 -51.93 -0.22 0.65 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.72 7.76 -51.93 -0.40 0.32 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -34.08 329.68 -8.77 -42.85 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.49 Total: 1.45 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: -0.19 Total: -26.12 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.74 Total: -38.14 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -2.24 Total: -39.46 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 38.50 SS G_CDS: -0.54 Total: 37.96 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.08 -8.77 -42.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357423262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.628 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds