Wall clock time and date at job start Tue Mar 31 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.52738 * 2 1 4 4 S 1.65602 * 119.99697 * 37.83440 * 3 2 1 5 5 O 1.42100 * 104.27876 * 304.30696 * 4 3 2 6 6 O 1.42094 * 104.27640 * 176.45044 * 4 3 2 7 7 C 1.81403 * 104.45107 * 60.38250 * 4 3 2 8 8 C 1.53001 * 109.47220 * 171.55462 * 7 4 3 9 9 C 1.53003 * 109.46855 * 179.97438 * 8 7 4 10 10 C 1.50696 * 109.46627 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00410 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99946 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99649 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00192 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47142 * 179.97438 * 14 12 10 16 16 H 1.48498 * 109.47425 * 300.00069 * 14 12 10 17 17 H 1.48502 * 109.47313 * 59.99890 * 14 12 10 18 18 C 1.53184 * 109.56966 * 120.15753 * 2 1 3 19 19 C 1.53184 * 109.03076 * 176.91446 * 18 2 1 20 20 C 1.53089 * 109.16541 * 303.01913 * 19 18 2 21 21 O 1.42903 * 109.41591 * 57.61169 * 20 19 18 22 22 C 1.42906 * 114.09504 * 298.83915 * 21 20 19 23 23 H 1.08997 * 109.46597 * 53.45120 * 1 2 3 24 24 H 1.08991 * 109.47456 * 173.45652 * 1 2 3 25 25 H 1.09003 * 109.46906 * 293.45887 * 1 2 3 26 26 H 0.96991 * 120.00483 * 217.83637 * 3 2 1 27 27 H 1.09003 * 109.47132 * 51.54885 * 7 4 3 28 28 H 1.09007 * 109.46725 * 291.55250 * 7 4 3 29 29 H 1.08997 * 109.47183 * 59.99876 * 8 7 4 30 30 H 1.08995 * 109.46503 * 299.99914 * 8 7 4 31 31 H 1.08997 * 109.47197 * 60.00042 * 9 8 7 32 32 H 1.08998 * 109.47141 * 299.99970 * 9 8 7 33 33 H 0.97001 * 119.99972 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.54582 * 296.78181 * 18 2 1 35 35 H 1.08998 * 109.54561 * 57.05441 * 18 2 1 36 36 H 1.09002 * 109.51671 * 183.11280 * 19 18 2 37 37 H 1.08992 * 109.52231 * 62.92791 * 19 18 2 38 38 H 1.09004 * 109.47656 * 297.62896 * 20 19 18 39 39 H 1.09001 * 109.49054 * 177.60382 * 20 19 18 40 40 H 1.08994 * 109.48378 * 301.17725 * 22 21 20 41 41 H 1.08997 * 109.48955 * 181.14670 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3807 0.0000 4 16 1.2289 2.5397 0.8797 5 8 -0.1096 2.4870 0.4055 6 8 2.0202 3.7078 0.7117 7 6 1.3212 1.9493 2.5925 8 6 0.8071 3.0388 3.5358 9 6 0.8844 2.5405 4.9804 10 6 0.3787 3.6138 5.9095 11 1 0.0368 4.5570 5.5098 12 6 0.3534 3.3920 7.2702 13 7 0.7702 2.2436 7.7570 14 14 -0.2727 4.7226 8.4220 15 1 -0.1979 4.2390 9.8240 16 1 0.5636 5.9405 8.2726 17 1 -1.6824 5.0459 8.0850 18 6 2.0431 -0.7251 1.2480 19 6 3.5729 -0.7856 1.1970 20 6 4.0056 -1.4795 -0.0972 21 8 3.4695 -0.7724 -1.2174 22 6 2.0416 -0.7243 -1.2480 23 1 -0.3632 0.6120 -0.8256 24 1 -0.3634 -1.0209 -0.1171 25 1 -0.3633 0.4091 0.9428 26 1 2.8070 1.6161 -0.5152 27 1 2.3560 1.7128 2.8401 28 1 0.7079 1.0548 2.7020 29 1 -0.2277 3.2751 3.2883 30 1 1.4204 3.9331 3.4262 31 1 1.9191 2.3038 5.2283 32 1 0.2709 1.6462 5.0896 33 1 0.7521 2.0873 8.7142 34 1 1.7292 -0.1827 2.1398 35 1 1.6389 -1.7370 1.2738 36 1 3.9439 -1.3484 2.0536 37 1 3.9784 0.2258 1.2212 38 1 3.6336 -2.5041 -0.1022 39 1 5.0938 -1.4876 -0.1593 40 1 1.6440 -1.7389 -1.2680 41 1 1.7148 -0.1882 -2.1390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357423262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:28 Heat of formation + Delta-G solvation = -160.761453 kcal Electronic energy + Delta-G solvation = -22700.607030 eV Core-core repulsion = 19320.090786 eV Total energy + Delta-G solvation = -3380.516244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.87249 -38.28319 -37.11079 -36.72032 -36.46217 -34.23298 -33.34729 -31.50309 -29.72527 -27.91056 -26.32355 -25.40706 -23.21526 -22.46729 -21.22748 -20.01349 -18.66123 -18.60918 -17.66065 -17.36222 -16.90231 -16.73141 -16.47491 -16.08668 -15.76817 -15.52173 -15.33696 -14.54529 -14.17944 -14.02126 -13.89060 -13.59792 -13.52147 -13.26406 -13.15785 -13.06524 -12.93049 -12.77998 -12.73885 -12.56650 -12.19107 -12.13927 -12.07581 -11.81583 -11.74245 -11.39387 -11.23779 -11.08398 -10.60447 -10.57303 -10.18460 -8.23078 -6.33939 -0.73070 1.39963 1.42200 1.50174 1.74818 2.39433 2.72553 2.99680 3.10547 3.22632 3.54726 3.71328 3.77174 3.82947 3.87570 4.05237 4.16592 4.34581 4.36762 4.54530 4.62228 4.63582 4.72486 4.78235 4.80922 4.85829 4.95395 5.03777 5.08644 5.13430 5.23983 5.36579 5.43492 5.45327 5.62119 5.78588 6.09828 6.19326 6.28940 6.81077 7.35304 8.88107 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.004071 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.750295 B = 6875.781156 C = 7441.584145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.142 3.858 3 N -1.095 6.095 4 S 2.625 3.375 5 O -0.979 6.979 6 O -0.999 6.999 7 C -0.612 4.612 8 C -0.104 4.104 9 C 0.034 3.966 10 C -0.554 4.554 11 H 0.059 0.941 12 C 0.005 3.995 13 N -0.928 5.928 14 Si 0.961 3.039 15 H -0.280 1.280 16 H -0.269 1.269 17 H -0.267 1.267 18 C -0.160 4.160 19 C -0.158 4.158 20 C 0.057 3.943 21 O -0.394 6.394 22 C 0.068 3.932 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.057 0.943 26 H 0.424 0.576 27 H 0.144 0.856 28 H 0.147 0.853 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.002 0.998 32 H 0.004 0.996 33 H 0.265 0.735 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -11.252 -17.657 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.053 3.947 3 N -0.857 5.857 4 S 2.721 3.279 5 O -0.969 6.969 6 O -0.990 6.990 7 C -0.742 4.742 8 C -0.143 4.143 9 C -0.004 4.004 10 C -0.592 4.592 11 H 0.077 0.923 12 C -0.193 4.193 13 N -0.568 5.568 14 Si 0.785 3.215 15 H -0.205 1.205 16 H -0.193 1.193 17 H -0.192 1.192 18 C -0.199 4.199 19 C -0.196 4.196 20 C -0.019 4.019 21 O -0.313 6.313 22 C -0.011 4.011 23 H 0.093 0.907 24 H 0.118 0.882 25 H 0.076 0.924 26 H 0.261 0.739 27 H 0.162 0.838 28 H 0.165 0.835 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.106 0.894 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.801 -10.523 -17.931 21.135 hybrid contribution 0.146 0.243 1.508 1.535 sum 3.947 -10.280 -16.422 19.772 Atomic orbital electron populations 1.22549 0.92425 1.04808 1.04049 1.21018 0.94535 0.81019 0.98121 1.55346 1.45301 1.21039 1.63992 1.04349 0.73670 0.72984 0.76924 1.93580 1.38183 1.86622 1.78485 1.93518 1.71051 1.48238 1.86170 1.30774 1.12010 1.10361 1.21086 1.21304 1.00592 0.96026 0.96413 1.18931 0.95880 0.95582 0.90048 1.21706 1.43111 1.01765 0.92642 0.92301 1.25898 0.95372 0.97935 1.00103 1.70056 1.48090 1.25063 1.13613 0.85560 0.79235 0.79161 0.77494 1.20549 1.19349 1.19238 1.22547 0.96906 1.02880 0.97555 1.22187 0.95603 1.02320 0.99514 1.22737 0.99685 0.94959 0.84514 1.87935 1.20415 1.76856 1.46091 1.22912 0.81000 1.00786 0.96368 0.90718 0.88183 0.92445 0.73926 0.83809 0.83465 0.91639 0.91776 0.97941 0.97712 0.92623 0.90827 0.88106 0.89604 0.91799 0.91450 0.88008 0.89358 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.35 7.02 71.98 0.51 -2.85 16 2 C 0.14 2.47 0.78 3.70 0.00 2.47 16 3 N -1.10 -23.49 4.79 -151.84 -0.73 -24.21 16 4 S 2.63 76.81 5.01 -56.49 -0.28 76.53 16 5 O -0.98 -32.35 14.42 -127.65 -1.84 -34.20 16 6 O -1.00 -36.32 18.08 -127.65 -2.31 -38.63 16 7 C -0.61 -18.53 4.29 71.98 0.31 -18.22 16 8 C -0.10 -4.25 5.16 30.60 0.16 -4.09 16 9 C 0.03 1.73 4.97 29.85 0.15 1.88 16 10 C -0.55 -31.47 9.11 25.60 0.23 -31.24 16 11 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 12 C 0.01 0.31 5.46 84.66 0.46 0.77 16 13 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 14 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 C -0.16 -2.60 4.80 30.72 0.15 -2.45 16 19 C -0.16 -2.44 5.97 30.69 0.18 -2.26 16 20 C 0.06 0.76 6.84 72.01 0.49 1.25 16 21 O -0.39 -6.59 10.39 -148.98 -1.55 -8.14 16 22 C 0.07 0.95 5.67 72.01 0.41 1.36 16 23 H 0.07 1.57 7.31 -2.39 -0.02 1.55 16 24 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.25 5.74 -2.39 -0.01 1.24 16 26 H 0.42 8.38 8.38 -96.76 -0.81 7.57 16 27 H 0.14 3.90 7.95 -2.39 -0.02 3.88 16 28 H 0.15 3.92 5.73 -2.39 -0.01 3.90 16 29 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.07 1.39 4.30 -2.39 -0.01 1.38 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.13 7.76 -2.39 -0.02 1.11 16 38 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -72.85 329.68 -1.14 -73.99 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.21 Total: 16.95 kcal Atomic # 6 Polarization: -56.43 SS G_CDS: 3.05 Total: -53.38 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -0.44 Total: -79.17 kcal Atomic # 8 Polarization: -75.27 SS G_CDS: -5.70 Total: -80.97 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 76.81 SS G_CDS: -0.28 Total: 76.53 kcal Total: -72.85 -1.14 -73.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357423262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.775 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds