Wall clock time and date at job start Tue Mar 31 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.57642 * 2 1 4 4 S 1.65596 * 119.99944 * 37.54435 * 3 2 1 5 5 O 1.42097 * 104.27854 * 176.27553 * 4 3 2 6 6 O 1.42108 * 104.27584 * 304.13340 * 4 3 2 7 7 C 1.81398 * 104.45015 * 60.20110 * 4 3 2 8 8 C 1.53008 * 109.47081 * 171.74435 * 7 4 3 9 9 C 1.52996 * 109.46822 * 180.02562 * 8 7 4 10 10 C 1.50707 * 109.46903 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99794 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99660 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00449 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99474 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47053 * 90.00196 * 14 12 10 16 16 H 1.48504 * 109.46812 * 210.00104 * 14 12 10 17 17 H 1.48498 * 109.47004 * 330.00219 * 14 12 10 18 18 C 1.53186 * 109.51984 * 239.84853 * 2 1 3 19 19 C 1.53175 * 109.03700 * 183.11407 * 18 2 1 20 20 C 1.53095 * 109.21435 * 56.94730 * 19 18 2 21 21 O 1.42910 * 109.41283 * 302.49071 * 20 19 18 22 22 C 1.42908 * 114.15582 * 61.05533 * 21 20 19 23 23 H 1.08995 * 109.47145 * 180.15670 * 1 2 3 24 24 H 1.09008 * 109.46317 * 300.15689 * 1 2 3 25 25 H 1.09004 * 109.47079 * 60.14900 * 1 2 3 26 26 H 0.96999 * 119.99841 * 217.54194 * 3 2 1 27 27 H 1.09000 * 109.47391 * 291.74305 * 7 4 3 28 28 H 1.09006 * 109.47016 * 51.74349 * 7 4 3 29 29 H 1.08998 * 109.46943 * 299.99624 * 8 7 4 30 30 H 1.08989 * 109.47036 * 60.00020 * 8 7 4 31 31 H 1.09000 * 109.47097 * 299.99531 * 9 8 7 32 32 H 1.09000 * 109.47845 * 59.99409 * 9 8 7 33 33 H 0.97001 * 119.99968 * 179.97438 * 13 12 10 34 34 H 1.08991 * 109.54325 * 63.24624 * 18 2 1 35 35 H 1.09004 * 109.61003 * 303.02511 * 18 2 1 36 36 H 1.08998 * 109.52199 * 176.87989 * 19 18 2 37 37 H 1.08998 * 109.52516 * 297.01240 * 19 18 2 38 38 H 1.08996 * 109.48292 * 62.40305 * 20 19 18 39 39 H 1.09004 * 109.47849 * 182.44083 * 20 19 18 40 40 H 1.09001 * 109.47899 * 178.89206 * 22 21 20 41 41 H 1.08994 * 109.47486 * 58.86196 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0209 1.3803 0.0000 4 16 1.2269 2.5414 0.8739 5 8 2.0223 3.7076 0.7111 6 8 -0.1085 2.4920 0.3904 7 6 1.3057 1.9512 2.5874 8 6 0.7835 3.0405 3.5265 9 6 0.8506 2.5428 4.9717 10 6 0.3368 3.6159 5.8968 11 1 -0.0031 4.5586 5.4942 12 6 0.3007 3.3940 7.2572 13 7 0.7151 2.2463 7.7475 14 14 -0.3368 4.7239 8.4037 15 1 -1.8008 4.5579 8.5887 16 1 0.3441 4.6119 9.7187 17 1 -0.0605 6.0590 7.8152 18 6 2.0418 -0.7252 -1.2485 19 6 3.5715 -0.7871 -1.1984 20 6 4.0056 -1.4808 0.0954 21 8 3.4695 -0.7745 1.2161 22 6 2.0416 -0.7249 1.2475 23 1 -0.3633 -1.0276 0.0028 24 1 -0.3632 0.5163 0.8887 25 1 -0.3633 0.5115 -0.8913 26 1 2.8109 1.6141 -0.5119 27 1 0.6922 1.0564 2.6921 28 1 2.3388 1.7154 2.8433 29 1 1.3971 3.9352 3.4219 30 1 -0.2494 3.2762 3.2706 31 1 0.2372 1.6479 5.0767 32 1 1.8836 2.3072 5.2274 33 1 0.6901 2.0904 8.7046 34 1 1.7279 -0.1823 -2.1399 35 1 1.6366 -1.7368 -1.2759 36 1 3.9415 -1.3500 -2.0553 37 1 3.9780 0.2239 -1.2236 38 1 3.6337 -2.5054 0.1011 39 1 5.0940 -1.4887 0.1562 40 1 1.7160 -0.1886 2.1388 41 1 1.6432 -1.7392 1.2676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357423265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:33 Heat of formation + Delta-G solvation = -132.958729 kcal Electronic energy + Delta-G solvation = -22702.967490 eV Core-core repulsion = 19323.656863 eV Total energy + Delta-G solvation = -3379.310627 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.14969 -37.01517 -35.95528 -35.61622 -34.70094 -32.82778 -32.17102 -30.64826 -27.86579 -27.18302 -25.43103 -23.69074 -22.55712 -20.77680 -20.26777 -18.94956 -17.60491 -16.84712 -16.59982 -16.31369 -15.86158 -15.69170 -15.18008 -14.64694 -14.59261 -14.44703 -14.18139 -13.32678 -13.04922 -12.85848 -12.69166 -12.40531 -12.28710 -12.18549 -11.89801 -11.76575 -11.72287 -11.52118 -11.33353 -11.17898 -10.93601 -10.88048 -10.71720 -10.53071 -10.35330 -10.21850 -9.92251 -9.42047 -9.23308 -9.03352 -8.38824 -6.03713 -4.06669 0.51298 2.83128 3.31800 3.37917 3.42181 3.67058 3.96164 4.22700 4.39296 4.44431 4.45196 4.54925 4.59574 4.86136 4.95263 5.12628 5.14449 5.22528 5.28177 5.32515 5.32741 5.41765 5.48565 5.61007 5.63922 5.68051 5.83433 5.94689 6.04026 6.19972 6.29742 6.47474 6.88745 6.95647 6.99894 7.59380 7.69571 7.94373 8.34965 8.99550 9.57953 11.07465 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023926 B = 0.004110 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.984587 B = 6810.879086 C = 7390.197101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.144 3.856 3 N -1.106 6.106 4 S 2.600 3.400 5 O -0.965 6.965 6 O -0.961 6.961 7 C -0.615 4.615 8 C -0.104 4.104 9 C 0.031 3.969 10 C -0.526 4.526 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.117 4.117 19 C -0.159 4.159 20 C 0.056 3.944 21 O -0.369 6.369 22 C 0.029 3.971 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.414 0.586 27 H 0.127 0.873 28 H 0.134 0.866 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.022 0.978 33 H 0.261 0.739 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 -10.373 -18.942 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.055 3.945 3 N -0.865 5.865 4 S 2.696 3.304 5 O -0.955 6.955 6 O -0.951 6.951 7 C -0.746 4.746 8 C -0.144 4.144 9 C -0.008 4.008 10 C -0.564 4.564 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.156 4.156 19 C -0.197 4.197 20 C -0.021 4.021 21 O -0.287 6.287 22 C -0.049 4.049 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.249 0.751 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.127 0.873 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.965 -9.642 -18.936 21.616 hybrid contribution 0.117 0.036 0.735 0.745 sum 4.082 -9.606 -18.201 20.981 Atomic orbital electron populations 1.22525 0.92039 1.03191 1.05595 1.20828 0.94796 0.82152 0.96730 1.55675 1.44686 1.20653 1.65438 1.05293 0.74237 0.73373 0.77479 1.93565 1.70087 1.46006 1.85861 1.93600 1.37133 1.86236 1.78156 1.30810 1.11273 1.11162 1.21396 1.21495 0.99968 0.94677 0.98213 1.19063 0.97772 0.96681 0.87255 1.21256 1.42603 1.00988 0.91590 0.92397 1.25011 0.95339 0.95625 0.98351 1.69956 1.47219 1.23270 1.12942 0.86566 0.78941 0.82218 0.80146 1.20596 1.21182 1.19742 1.21829 0.95605 1.00924 0.97234 1.22223 0.96183 1.02388 0.98860 1.22616 0.99260 0.94554 0.85622 1.88011 1.19555 1.76223 1.44885 1.23573 0.82022 1.00738 0.98578 0.90980 0.90626 0.89832 0.75106 0.85450 0.84729 0.91368 0.91834 0.96155 0.96012 0.92918 0.90418 0.90352 0.90590 0.90828 0.93146 0.88789 0.87330 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 7.10 37.16 0.26 -1.54 16 2 C 0.14 1.42 0.78 -131.68 -0.10 1.32 16 3 N -1.11 -12.66 5.24 0.65 0.00 -12.66 16 4 S 2.60 39.16 4.99 -107.50 -0.54 38.63 16 5 O -0.96 -17.72 18.08 -57.54 -1.04 -18.76 16 6 O -0.96 -16.15 14.50 -57.54 -0.83 -16.98 16 7 C -0.62 -9.70 4.27 37.16 0.16 -9.54 16 8 C -0.10 -2.13 5.16 -26.73 -0.14 -2.27 16 9 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 10 C -0.53 -14.88 9.11 -34.44 -0.31 -15.20 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 14 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 C -0.12 -0.87 4.96 -26.54 -0.13 -1.01 16 19 C -0.16 -1.10 5.95 -26.59 -0.16 -1.26 16 20 C 0.06 0.45 6.85 37.21 0.25 0.71 16 21 O -0.37 -4.19 10.67 -35.23 -0.38 -4.57 16 22 C 0.03 0.30 5.55 37.20 0.21 0.51 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.89 5.22 -51.92 -0.27 0.62 16 25 H 0.08 0.92 7.70 -51.93 -0.40 0.52 16 26 H 0.41 4.18 7.18 -34.47 -0.25 3.93 16 27 H 0.13 1.76 5.77 -51.92 -0.30 1.46 16 28 H 0.13 1.99 7.96 -51.92 -0.41 1.58 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.06 1.25 8.14 -51.94 -0.42 0.83 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.55 6.75 -51.93 -0.35 0.20 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 1.22 4.34 -51.93 -0.23 0.99 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -34.70 328.30 -8.72 -43.42 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.40 Total: 1.30 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -0.20 Total: -26.07 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.74 Total: -38.57 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -2.25 Total: -40.31 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 39.16 SS G_CDS: -0.54 Total: 38.63 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.70 -8.72 -43.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357423265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.540 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds