Wall clock time and date at job start Tue Mar 31 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.57642 * 2 1 4 4 S 1.65596 * 119.99944 * 37.54435 * 3 2 1 5 5 O 1.42097 * 104.27854 * 176.27553 * 4 3 2 6 6 O 1.42108 * 104.27584 * 304.13340 * 4 3 2 7 7 C 1.81398 * 104.45015 * 60.20110 * 4 3 2 8 8 C 1.53008 * 109.47081 * 171.74435 * 7 4 3 9 9 C 1.52996 * 109.46822 * 180.02562 * 8 7 4 10 10 C 1.50707 * 109.46903 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99794 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99660 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00449 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99474 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47053 * 90.00196 * 14 12 10 16 16 H 1.48504 * 109.46812 * 210.00104 * 14 12 10 17 17 H 1.48498 * 109.47004 * 330.00219 * 14 12 10 18 18 C 1.53186 * 109.51984 * 239.84853 * 2 1 3 19 19 C 1.53175 * 109.03700 * 183.11407 * 18 2 1 20 20 C 1.53095 * 109.21435 * 56.94730 * 19 18 2 21 21 O 1.42910 * 109.41283 * 302.49071 * 20 19 18 22 22 C 1.42908 * 114.15582 * 61.05533 * 21 20 19 23 23 H 1.08995 * 109.47145 * 180.15670 * 1 2 3 24 24 H 1.09008 * 109.46317 * 300.15689 * 1 2 3 25 25 H 1.09004 * 109.47079 * 60.14900 * 1 2 3 26 26 H 0.96999 * 119.99841 * 217.54194 * 3 2 1 27 27 H 1.09000 * 109.47391 * 291.74305 * 7 4 3 28 28 H 1.09006 * 109.47016 * 51.74349 * 7 4 3 29 29 H 1.08998 * 109.46943 * 299.99624 * 8 7 4 30 30 H 1.08989 * 109.47036 * 60.00020 * 8 7 4 31 31 H 1.09000 * 109.47097 * 299.99531 * 9 8 7 32 32 H 1.09000 * 109.47845 * 59.99409 * 9 8 7 33 33 H 0.97001 * 119.99968 * 179.97438 * 13 12 10 34 34 H 1.08991 * 109.54325 * 63.24624 * 18 2 1 35 35 H 1.09004 * 109.61003 * 303.02511 * 18 2 1 36 36 H 1.08998 * 109.52199 * 176.87989 * 19 18 2 37 37 H 1.08998 * 109.52516 * 297.01240 * 19 18 2 38 38 H 1.08996 * 109.48292 * 62.40305 * 20 19 18 39 39 H 1.09004 * 109.47849 * 182.44083 * 20 19 18 40 40 H 1.09001 * 109.47899 * 178.89206 * 22 21 20 41 41 H 1.08994 * 109.47486 * 58.86196 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0209 1.3803 0.0000 4 16 1.2269 2.5414 0.8739 5 8 2.0223 3.7076 0.7111 6 8 -0.1085 2.4920 0.3904 7 6 1.3057 1.9512 2.5874 8 6 0.7835 3.0405 3.5265 9 6 0.8506 2.5428 4.9717 10 6 0.3368 3.6159 5.8968 11 1 -0.0031 4.5586 5.4942 12 6 0.3007 3.3940 7.2572 13 7 0.7151 2.2463 7.7475 14 14 -0.3368 4.7239 8.4037 15 1 -1.8008 4.5579 8.5887 16 1 0.3441 4.6119 9.7187 17 1 -0.0605 6.0590 7.8152 18 6 2.0418 -0.7252 -1.2485 19 6 3.5715 -0.7871 -1.1984 20 6 4.0056 -1.4808 0.0954 21 8 3.4695 -0.7745 1.2161 22 6 2.0416 -0.7249 1.2475 23 1 -0.3633 -1.0276 0.0028 24 1 -0.3632 0.5163 0.8887 25 1 -0.3633 0.5115 -0.8913 26 1 2.8109 1.6141 -0.5119 27 1 0.6922 1.0564 2.6921 28 1 2.3388 1.7154 2.8433 29 1 1.3971 3.9352 3.4219 30 1 -0.2494 3.2762 3.2706 31 1 0.2372 1.6479 5.0767 32 1 1.8836 2.3072 5.2274 33 1 0.6901 2.0904 8.7046 34 1 1.7279 -0.1823 -2.1399 35 1 1.6366 -1.7368 -1.2759 36 1 3.9415 -1.3500 -2.0553 37 1 3.9780 0.2239 -1.2236 38 1 3.6337 -2.5054 0.1011 39 1 5.0940 -1.4887 0.1562 40 1 1.7160 -0.1886 2.1388 41 1 1.6432 -1.7392 1.2676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357423265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:32 Heat of formation + Delta-G solvation = -159.017186 kcal Electronic energy + Delta-G solvation = -22704.097470 eV Core-core repulsion = 19323.656863 eV Total energy + Delta-G solvation = -3380.440606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.88883 -38.28873 -37.12288 -36.64773 -36.50585 -34.22966 -33.41651 -31.55420 -29.70242 -27.90565 -26.28237 -25.45319 -23.30538 -22.36459 -21.24046 -20.07512 -18.68533 -18.59733 -17.72348 -17.35110 -16.99172 -16.84568 -16.47489 -16.05642 -15.63955 -15.51806 -15.28541 -14.51212 -14.20929 -14.07338 -13.79368 -13.57116 -13.52682 -13.27047 -13.21249 -13.07091 -13.04351 -12.75255 -12.71729 -12.59811 -12.27364 -12.15100 -12.08493 -11.76924 -11.50603 -11.38034 -11.24601 -11.14529 -10.85427 -10.57197 -10.01525 -8.22184 -6.33355 -0.73375 1.40277 1.41192 1.52618 1.73809 2.40039 2.70417 2.98657 3.11301 3.23150 3.49867 3.70820 3.75794 3.82192 3.89787 4.04128 4.18992 4.31601 4.34158 4.51619 4.55784 4.62442 4.75042 4.75705 4.81514 4.89557 4.97310 5.02591 5.05922 5.07372 5.26602 5.34428 5.42607 5.45564 5.62766 5.79511 6.08996 6.19805 6.31023 6.82037 7.35963 8.89318 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023926 B = 0.004110 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.984587 B = 6810.879086 C = 7390.197101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.141 3.859 3 N -1.094 6.094 4 S 2.627 3.373 5 O -0.998 6.998 6 O -0.977 6.977 7 C -0.615 4.615 8 C -0.103 4.103 9 C 0.032 3.968 10 C -0.553 4.553 11 H 0.060 0.940 12 C 0.004 3.996 13 N -0.929 5.929 14 Si 0.963 3.037 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.114 4.114 19 C -0.156 4.156 20 C 0.048 3.952 21 O -0.396 6.396 22 C 0.024 3.976 23 H 0.099 0.901 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.422 0.578 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.005 0.995 32 H 0.000 1.000 33 H 0.265 0.735 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.278 -11.154 -20.158 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.052 3.948 3 N -0.856 5.856 4 S 2.722 3.278 5 O -0.989 6.989 6 O -0.966 6.966 7 C -0.745 4.745 8 C -0.142 4.142 9 C -0.006 4.006 10 C -0.591 4.591 11 H 0.078 0.922 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.787 3.213 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.153 4.153 19 C -0.194 4.194 20 C -0.028 4.028 21 O -0.314 6.314 22 C -0.054 4.054 23 H 0.118 0.882 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.259 0.741 27 H 0.164 0.836 28 H 0.160 0.840 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.023 0.977 32 H 0.019 0.981 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.871 -10.419 -20.155 23.017 hybrid contribution 0.184 0.179 1.069 1.100 sum 4.055 -10.239 -19.086 22.035 Atomic orbital electron populations 1.22571 0.92319 1.04682 1.04284 1.21039 0.94597 0.81030 0.98120 1.55363 1.44849 1.21039 1.64310 1.04296 0.73671 0.72992 0.76820 1.93515 1.70829 1.48349 1.86187 1.93585 1.38292 1.86613 1.78158 1.30795 1.11894 1.10385 1.21461 1.21297 1.00613 0.95947 0.96369 1.18949 0.95838 0.95661 0.90158 1.21734 1.42873 1.01787 0.92699 0.92196 1.25925 0.95426 0.97980 1.00114 1.70072 1.48158 1.25184 1.13499 0.85480 0.78618 0.79334 0.77849 1.19598 1.20545 1.18970 1.21866 0.95932 1.01720 0.95768 1.22224 0.95796 1.02246 0.99129 1.22845 0.99692 0.95144 0.85148 1.87975 1.19929 1.76996 1.46546 1.23607 0.82000 1.01811 0.98011 0.88206 0.92448 0.90585 0.74067 0.83593 0.84010 0.91760 0.91390 0.97674 0.98114 0.92632 0.89903 0.88195 0.88290 0.91607 0.91659 0.88172 0.88915 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 7.10 71.98 0.51 -2.89 16 2 C 0.14 2.50 0.78 3.69 0.00 2.51 16 3 N -1.09 -23.79 5.24 -151.85 -0.80 -24.59 16 4 S 2.63 78.41 4.99 -56.49 -0.28 78.13 16 5 O -1.00 -36.70 18.08 -127.65 -2.31 -39.01 16 6 O -0.98 -32.37 14.50 -127.65 -1.85 -34.23 16 7 C -0.62 -19.56 4.27 71.98 0.31 -19.25 16 8 C -0.10 -4.30 5.16 30.60 0.16 -4.15 16 9 C 0.03 1.69 4.97 29.85 0.15 1.84 16 10 C -0.55 -31.83 9.11 25.60 0.23 -31.59 16 11 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 12 C 0.00 0.22 5.46 84.66 0.46 0.68 16 13 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 14 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 C -0.11 -1.35 4.96 30.71 0.15 -1.20 16 19 C -0.16 -1.73 5.95 30.68 0.18 -1.54 16 20 C 0.05 0.66 6.85 72.01 0.49 1.15 16 21 O -0.40 -8.44 10.67 -148.98 -1.59 -10.03 16 22 C 0.02 0.46 5.55 72.01 0.40 0.86 16 23 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 1.29 5.22 -2.38 -0.01 1.28 16 25 H 0.08 1.55 7.70 -2.39 -0.02 1.54 16 26 H 0.42 7.99 7.18 -96.75 -0.69 7.30 16 27 H 0.15 4.04 5.77 -2.39 -0.01 4.03 16 28 H 0.14 4.27 7.96 -2.39 -0.02 4.25 16 29 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 0.83 6.75 -2.39 -0.02 0.82 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.09 2.02 4.34 -2.39 -0.01 2.01 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -74.75 328.30 -1.13 -75.89 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.33 Total: 16.72 kcal Atomic # 6 Polarization: -56.64 SS G_CDS: 3.05 Total: -53.59 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -0.51 Total: -80.45 kcal Atomic # 8 Polarization: -77.51 SS G_CDS: -5.75 Total: -83.26 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 78.41 SS G_CDS: -0.28 Total: 78.13 kcal Total: -74.75 -1.13 -75.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357423265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.132 kcal (2) G-P(sol) polarization free energy of solvation -74.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds