Wall clock time and date at job start Tue Mar 31 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34705 * 117.00156 * 2 1 4 4 O 1.21467 * 120.00394 * 359.97438 * 3 2 1 5 5 C 1.47747 * 119.99731 * 179.97438 * 3 2 1 6 6 C 1.39659 * 120.11788 * 359.97438 * 5 3 2 7 7 C 1.37965 * 119.99152 * 180.23166 * 6 5 3 8 8 C 1.38258 * 120.22764 * 359.49131 * 7 6 5 9 9 C 1.50697 * 119.88423 * 180.23595 * 8 7 6 10 10 C 1.38959 * 120.23253 * 0.50862 * 8 7 6 11 11 N 1.39955 * 119.99611 * 179.72480 * 10 8 7 12 12 C 1.34784 * 119.99850 * 145.27913 * 11 10 8 13 13 O 1.21280 * 119.99668 * 4.51245 * 12 11 10 14 14 C 1.50698 * 119.99711 * 184.50922 * 12 11 10 15 15 C 1.53001 * 109.46914 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47116 * 180.02562 * 15 14 12 17 17 H 1.07993 * 120.00108 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99964 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99640 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00120 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47220 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47113 * 119.99915 * 20 18 16 23 23 H 1.48499 * 109.47351 * 240.00004 * 20 18 16 24 24 C 1.38617 * 120.00518 * 359.74655 * 10 8 7 25 25 H 1.09000 * 109.46763 * 60.00479 * 1 2 3 26 26 H 1.08992 * 109.47567 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47121 * 300.00488 * 1 2 3 28 28 H 1.08004 * 120.00690 * 359.95676 * 6 5 3 29 29 H 1.08000 * 119.88563 * 179.72600 * 7 6 5 30 30 H 1.09002 * 109.47132 * 270.27406 * 9 8 7 31 31 H 1.08996 * 109.47476 * 30.27506 * 9 8 7 32 32 H 1.09004 * 109.47216 * 150.27489 * 9 8 7 33 33 H 0.97003 * 119.99998 * 325.28347 * 11 10 8 34 34 H 1.08999 * 109.47145 * 299.99950 * 14 12 11 35 35 H 1.08994 * 109.47019 * 60.00187 * 14 12 11 36 36 H 1.08999 * 109.46941 * 299.99790 * 15 14 12 37 37 H 1.08997 * 109.47116 * 59.99634 * 15 14 12 38 38 H 0.97003 * 119.99906 * 179.97438 * 19 18 16 39 39 H 1.08006 * 120.11504 * 180.02562 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5391 1.2774 0.0006 6 6 4.3020 0.1077 0.0017 7 6 5.6796 0.1828 0.0070 8 6 6.3096 1.4135 0.0007 9 6 7.8148 1.4865 0.0013 10 6 5.5597 2.5834 -0.0004 11 7 6.2025 3.8265 -0.0009 12 6 5.6601 4.8654 -0.6667 13 8 4.5757 4.7463 -1.1965 14 6 6.4012 6.1747 -0.7527 15 6 5.5719 7.1783 -1.5565 16 6 6.3133 8.4874 -1.6431 17 1 7.2791 8.5933 -1.1717 18 6 5.7580 9.5504 -2.3234 19 7 4.5816 9.4216 -2.8971 20 14 6.6765 11.1734 -2.4301 21 1 7.9683 11.0597 -1.7064 22 1 6.9342 11.5036 -3.8548 23 1 5.8572 12.2475 -1.8135 24 6 4.1750 2.5192 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.8137 -0.8557 0.0028 29 1 6.2679 -0.7229 0.0123 30 1 8.1773 1.5048 1.0291 31 1 8.2211 0.6149 -0.5118 32 1 8.1348 2.3928 -0.5130 33 1 7.0385 3.9405 0.4778 34 1 6.5687 6.5641 0.2515 35 1 7.3603 6.0176 -1.2462 36 1 5.4041 6.7891 -2.5608 37 1 4.6130 7.3352 -1.0628 38 1 4.1908 10.1696 -3.3754 39 1 3.5904 3.4273 -0.0018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360415920.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:07 Heat of formation + Delta-G solvation = -106.128899 kcal Electronic energy + Delta-G solvation = -22316.338827 eV Core-core repulsion = 18802.747677 eV Total energy + Delta-G solvation = -3513.591150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.83810 -40.06143 -38.37464 -36.48432 -34.75366 -33.54332 -32.83966 -31.26990 -29.69193 -28.66452 -27.00590 -25.75426 -23.39025 -22.88273 -21.53474 -20.68987 -19.76062 -18.30765 -17.33543 -16.89857 -16.42392 -16.12411 -15.83981 -15.45908 -15.34736 -14.58042 -14.45404 -14.04215 -13.94252 -13.56312 -13.42086 -13.35005 -12.69126 -12.55410 -12.25536 -12.22091 -12.03516 -11.83965 -11.54915 -11.19992 -10.97189 -10.91779 -10.61179 -10.59821 -10.27890 -10.02406 -9.72266 -9.28460 -9.10003 -8.92298 -8.35414 -8.13517 -5.98142 -4.03110 0.58252 1.25584 2.42519 2.54077 3.03925 3.27742 3.31579 3.39074 3.41963 3.70731 4.45559 4.53359 4.61449 4.79919 4.93600 4.98006 5.03560 5.12021 5.25809 5.30576 5.35878 5.36962 5.39979 5.55635 5.75181 5.84859 6.02766 6.11335 6.12136 6.21666 6.24878 6.33701 6.42682 6.79300 6.92653 7.58946 7.69756 7.71514 7.80801 8.03379 8.32974 8.53859 9.05035 9.60753 11.12730 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018472 B = 0.003393 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.458277 B = 8250.936774 C = 9642.801485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.507 3.493 4 O -0.495 6.495 5 C -0.116 4.116 6 C -0.082 4.082 7 C -0.118 4.118 8 C -0.083 4.083 9 C -0.120 4.120 10 C 0.145 3.855 11 N -0.684 5.684 12 C 0.507 3.493 13 O -0.508 6.508 14 C -0.127 4.127 15 C 0.035 3.965 16 C -0.528 4.528 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.888 5.888 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.056 4.056 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.410 0.590 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 -22.864 8.733 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.351 3.649 4 O -0.382 6.382 5 C -0.118 4.118 6 C -0.101 4.101 7 C -0.136 4.136 8 C -0.086 4.086 9 C -0.176 4.176 10 C 0.050 3.950 11 N -0.331 5.331 12 C 0.296 3.704 13 O -0.380 6.380 14 C -0.167 4.167 15 C -0.002 4.002 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.526 5.526 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.076 4.076 25 H 0.083 0.917 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.154 0.846 29 H 0.151 0.849 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.247 0.753 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.274 -22.443 8.201 23.929 hybrid contribution 0.576 0.996 0.077 1.153 sum 1.850 -21.448 8.278 23.064 Atomic orbital electron populations 1.23270 0.76071 1.03567 1.02824 1.86515 1.23482 1.32778 1.84696 1.21210 0.89165 0.81427 0.73062 1.90892 1.66633 1.35895 1.44816 1.18886 0.88910 0.94515 1.09471 1.21325 0.93754 0.97671 0.97375 1.20779 0.94073 0.96747 1.02012 1.20010 0.96409 0.91955 1.00220 1.20824 0.90493 1.03648 1.02664 1.17480 0.91095 0.85455 1.00993 1.43941 1.27136 1.08544 1.53445 1.21944 0.86585 0.85698 0.76126 1.90708 1.20565 1.82529 1.44215 1.21911 1.00493 0.90821 1.03490 1.18935 0.94793 0.91275 0.95221 1.21216 1.04516 0.96624 1.34286 0.92488 1.25032 0.94955 0.98928 0.95487 1.70009 1.16248 1.31534 1.34838 0.86524 0.79817 0.83797 0.77748 1.19743 1.21004 1.20998 1.21504 0.93409 0.98141 0.94586 0.91724 0.88056 0.91823 0.84584 0.84937 0.90636 0.90788 0.91018 0.75349 0.89743 0.89742 0.95690 0.95635 0.92941 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.39 16 2 O -0.36 -4.30 9.81 -40.50 -0.40 -4.69 16 3 C 0.51 7.67 7.90 34.62 0.27 7.95 16 4 O -0.49 -9.18 16.13 -19.24 -0.31 -9.49 16 5 C -0.12 -1.66 5.87 -105.01 -0.62 -2.28 16 6 C -0.08 -0.90 9.61 -39.15 -0.38 -1.27 16 7 C -0.12 -1.13 9.67 -39.67 -0.38 -1.51 16 8 C -0.08 -0.90 5.90 -104.35 -0.62 -1.51 16 9 C -0.12 -0.91 9.46 36.00 0.34 -0.57 16 10 C 0.15 2.05 6.28 -83.74 -0.53 1.52 16 11 N -0.68 -9.54 4.74 -9.90 -0.05 -9.59 16 12 C 0.51 9.52 7.67 -10.98 -0.08 9.43 16 13 O -0.51 -11.83 13.40 5.56 0.07 -11.76 16 14 C -0.13 -2.48 5.64 -27.88 -0.16 -2.63 16 15 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 16 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.06 -0.92 8.24 -38.97 -0.32 -1.24 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.14 1.17 7.61 -52.48 -0.40 0.77 16 29 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.07 0.57 7.15 -51.93 -0.37 0.20 16 33 H 0.41 4.16 7.84 -40.82 -0.32 3.84 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.16 3.13 5.79 -52.48 -0.30 2.82 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -36.18 339.49 -6.93 -43.12 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.16 Total: 0.85 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -1.93 Total: -3.45 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.69 Total: -36.26 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.63 Total: -25.94 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.18 -6.93 -43.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360415920.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.013 kcal (2) G-P(sol) polarization free energy of solvation -36.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds