Wall clock time and date at job start Tue Mar 31 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34705 * 117.00156 * 2 1 4 4 O 1.21467 * 120.00394 * 359.97438 * 3 2 1 5 5 C 1.47747 * 119.99731 * 179.97438 * 3 2 1 6 6 C 1.39659 * 120.11788 * 359.97438 * 5 3 2 7 7 C 1.37965 * 119.99152 * 180.23166 * 6 5 3 8 8 C 1.38258 * 120.22764 * 359.49131 * 7 6 5 9 9 C 1.50697 * 119.88423 * 180.23595 * 8 7 6 10 10 C 1.38959 * 120.23253 * 0.50862 * 8 7 6 11 11 N 1.39955 * 119.99611 * 179.72480 * 10 8 7 12 12 C 1.34784 * 119.99850 * 145.27913 * 11 10 8 13 13 O 1.21280 * 119.99668 * 4.51245 * 12 11 10 14 14 C 1.50698 * 119.99711 * 184.50922 * 12 11 10 15 15 C 1.53001 * 109.46914 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47116 * 180.02562 * 15 14 12 17 17 H 1.07993 * 120.00108 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99964 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99640 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00120 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47220 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47113 * 119.99915 * 20 18 16 23 23 H 1.48499 * 109.47351 * 240.00004 * 20 18 16 24 24 C 1.38617 * 120.00518 * 359.74655 * 10 8 7 25 25 H 1.09000 * 109.46763 * 60.00479 * 1 2 3 26 26 H 1.08992 * 109.47567 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47121 * 300.00488 * 1 2 3 28 28 H 1.08004 * 120.00690 * 359.95676 * 6 5 3 29 29 H 1.08000 * 119.88563 * 179.72600 * 7 6 5 30 30 H 1.09002 * 109.47132 * 270.27406 * 9 8 7 31 31 H 1.08996 * 109.47476 * 30.27506 * 9 8 7 32 32 H 1.09004 * 109.47216 * 150.27489 * 9 8 7 33 33 H 0.97003 * 119.99998 * 325.28347 * 11 10 8 34 34 H 1.08999 * 109.47145 * 299.99950 * 14 12 11 35 35 H 1.08994 * 109.47019 * 60.00187 * 14 12 11 36 36 H 1.08999 * 109.46941 * 299.99790 * 15 14 12 37 37 H 1.08997 * 109.47116 * 59.99634 * 15 14 12 38 38 H 0.97003 * 119.99906 * 179.97438 * 19 18 16 39 39 H 1.08006 * 120.11504 * 180.02562 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5391 1.2774 0.0006 6 6 4.3020 0.1077 0.0017 7 6 5.6796 0.1828 0.0070 8 6 6.3096 1.4135 0.0007 9 6 7.8148 1.4865 0.0013 10 6 5.5597 2.5834 -0.0004 11 7 6.2025 3.8265 -0.0009 12 6 5.6601 4.8654 -0.6667 13 8 4.5757 4.7463 -1.1965 14 6 6.4012 6.1747 -0.7527 15 6 5.5719 7.1783 -1.5565 16 6 6.3133 8.4874 -1.6431 17 1 7.2791 8.5933 -1.1717 18 6 5.7580 9.5504 -2.3234 19 7 4.5816 9.4216 -2.8971 20 14 6.6765 11.1734 -2.4301 21 1 7.9683 11.0597 -1.7064 22 1 6.9342 11.5036 -3.8548 23 1 5.8572 12.2475 -1.8135 24 6 4.1750 2.5192 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.8137 -0.8557 0.0028 29 1 6.2679 -0.7229 0.0123 30 1 8.1773 1.5048 1.0291 31 1 8.2211 0.6149 -0.5118 32 1 8.1348 2.3928 -0.5130 33 1 7.0385 3.9405 0.4778 34 1 6.5687 6.5641 0.2515 35 1 7.3603 6.0176 -1.2462 36 1 5.4041 6.7891 -2.5608 37 1 4.6130 7.3352 -1.0628 38 1 4.1908 10.1696 -3.3754 39 1 3.5904 3.4273 -0.0018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360415920.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:07 Heat of formation + Delta-G solvation = -130.721593 kcal Electronic energy + Delta-G solvation = -22317.405246 eV Core-core repulsion = 18802.747677 eV Total energy + Delta-G solvation = -3514.657569 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.98064 -41.29120 -39.59214 -37.60467 -36.01928 -35.60475 -33.78032 -33.15596 -30.92092 -29.50306 -28.05229 -27.44597 -24.75956 -23.93683 -23.07431 -21.77487 -21.23008 -19.43260 -18.90727 -18.30213 -17.58491 -17.47060 -17.22232 -16.79362 -16.46103 -16.29905 -15.80731 -15.22309 -14.84210 -14.74665 -14.56875 -14.38746 -14.21654 -14.14605 -13.43736 -13.24668 -13.04946 -12.98614 -12.85897 -12.72477 -12.46968 -12.42128 -11.96414 -11.90527 -11.79341 -11.66857 -11.47332 -11.29756 -10.78523 -10.59550 -9.89463 -9.22664 -8.19493 -6.34007 -0.43404 0.23322 1.31507 1.41532 1.43265 1.54410 1.56511 1.63822 2.06242 2.42659 2.70046 3.13941 3.60614 3.76425 3.87958 3.93009 4.11216 4.25589 4.26980 4.27400 4.40423 4.47366 4.51435 4.64412 4.74787 4.82180 4.88316 5.01987 5.06473 5.23153 5.24736 5.27555 5.36157 5.42825 5.49087 5.58956 5.82683 5.88729 6.14439 6.40634 6.58631 6.84879 7.16634 7.36667 8.93515 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018472 B = 0.003393 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.458277 B = 8250.936774 C = 9642.801485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.506 3.494 4 O -0.547 6.547 5 C -0.141 4.141 6 C -0.063 4.063 7 C -0.106 4.106 8 C -0.064 4.064 9 C -0.121 4.121 10 C 0.117 3.883 11 N -0.658 5.658 12 C 0.508 3.492 13 O -0.566 6.566 14 C -0.114 4.114 15 C 0.040 3.960 16 C -0.540 4.540 17 H 0.081 0.919 18 C -0.010 4.010 19 N -0.939 5.939 20 Si 0.976 3.024 21 H -0.249 1.249 22 H -0.281 1.281 23 H -0.283 1.283 24 C -0.088 4.088 25 H 0.055 0.945 26 H 0.145 0.855 27 H 0.060 0.940 28 H 0.166 0.834 29 H 0.182 0.818 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.431 0.569 34 H 0.112 0.888 35 H 0.116 0.884 36 H -0.018 1.018 37 H -0.021 1.021 38 H 0.262 0.738 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 -25.462 9.944 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.353 3.647 4 O -0.438 6.438 5 C -0.143 4.143 6 C -0.082 4.082 7 C -0.124 4.124 8 C -0.066 4.066 9 C -0.177 4.177 10 C 0.023 3.977 11 N -0.306 5.306 12 C 0.298 3.702 13 O -0.444 6.444 14 C -0.154 4.154 15 C 0.002 3.998 16 C -0.578 4.578 17 H 0.099 0.901 18 C -0.207 4.207 19 N -0.580 5.580 20 Si 0.800 3.200 21 H -0.172 1.172 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.109 4.109 25 H 0.074 0.926 26 H 0.163 0.837 27 H 0.079 0.921 28 H 0.184 0.816 29 H 0.199 0.801 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.271 0.729 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.000 1.000 37 H -0.002 1.002 38 H 0.071 0.929 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.150 -25.110 9.461 27.323 hybrid contribution -0.651 1.615 -0.273 1.763 sum 4.499 -23.495 9.189 25.626 Atomic orbital electron populations 1.23624 0.74338 1.06220 1.02344 1.86501 1.25145 1.30804 1.83893 1.21564 0.89782 0.81547 0.71789 1.90863 1.67758 1.37688 1.47516 1.18970 0.88698 0.95146 1.11470 1.21707 0.94486 0.97239 0.94755 1.21354 0.93629 0.97909 0.99494 1.20456 0.98276 0.90806 0.97102 1.20981 0.87499 1.04683 1.04563 1.17652 0.90478 0.86362 1.03208 1.43457 1.27313 1.07687 1.52149 1.21758 0.85722 0.86615 0.76128 1.90714 1.23016 1.83529 1.47104 1.21662 1.00129 0.89608 1.03957 1.18717 0.94119 0.93364 0.93614 1.21734 1.05272 0.96966 1.33826 0.90139 1.26188 0.95807 1.03747 0.94982 1.70203 1.18590 1.33006 1.36163 0.85239 0.79000 0.77849 0.77936 1.17241 1.20678 1.20847 1.21250 0.94645 0.97383 0.97614 0.92619 0.83675 0.92084 0.81635 0.80070 0.88088 0.88312 0.91413 0.72854 0.87008 0.86645 0.99972 1.00234 0.92924 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.57 113.37 1.20 1.69 16 2 O -0.35 -8.26 9.81 -56.14 -0.55 -8.81 16 3 C 0.51 16.29 7.90 70.34 0.56 16.85 16 4 O -0.55 -22.49 16.13 19.94 0.32 -22.17 16 5 C -0.14 -4.17 5.87 -20.11 -0.12 -4.29 16 6 C -0.06 -1.21 9.61 22.55 0.22 -0.99 16 7 C -0.11 -1.54 9.67 22.21 0.21 -1.32 16 8 C -0.06 -1.16 5.90 -19.69 -0.12 -1.28 16 9 C -0.12 -1.22 9.46 71.24 0.67 -0.55 16 10 C 0.12 3.30 6.28 38.11 0.24 3.54 16 11 N -0.66 -18.20 4.74 -303.61 -1.44 -19.64 16 12 C 0.51 20.00 7.67 87.66 0.67 20.67 16 13 O -0.57 -29.06 13.40 -3.03 -0.04 -29.10 16 14 C -0.11 -4.48 5.64 29.85 0.17 -4.31 16 15 C 0.04 2.22 4.26 29.85 0.13 2.35 16 16 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 17 H 0.08 4.11 7.74 -2.91 -0.02 4.08 16 18 C -0.01 -0.59 5.46 84.66 0.46 -0.13 16 19 N -0.94 -60.73 13.29 21.45 0.28 -60.45 16 20 Si 0.98 44.59 29.54 68.60 2.03 46.62 16 21 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 C -0.09 -3.12 8.24 22.67 0.19 -2.93 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.17 2.17 7.61 -2.91 -0.02 2.14 16 29 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.60 8.08 -2.39 -0.02 0.58 16 32 H 0.07 0.79 7.15 -2.38 -0.02 0.78 16 33 H 0.43 7.81 7.84 -92.71 -0.73 7.08 16 34 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 35 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 36 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 37 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 38 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 39 H 0.11 4.87 5.79 -2.91 -0.02 4.86 16 Total: -1.00 -89.43 339.49 5.66 -83.77 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.35 Total: 11.00 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 4.71 Total: -1.21 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -1.15 Total: -80.09 kcal Atomic # 8 Polarization: -59.82 SS G_CDS: -0.27 Total: -60.09 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -89.43 5.66 -83.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360415920.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.955 kcal (2) G-P(sol) polarization free energy of solvation -89.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds