Wall clock time and date at job start Tue Mar 31 2020 06:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.34057 * 2 1 4 4 C 1.54291 * 109.40442 * 240.19675 * 2 1 3 5 5 N 1.48190 * 110.69349 * 200.49653 * 4 2 1 6 6 S 1.65601 * 118.50926 * 138.79352 * 5 4 2 7 7 O 1.42097 * 104.27663 * 26.05264 * 6 5 4 8 8 O 1.42097 * 104.27308 * 153.90675 * 6 5 4 9 9 C 1.81395 * 104.45146 * 269.97891 * 6 5 4 10 10 C 1.52998 * 109.47449 * 179.97438 * 9 6 5 11 11 C 1.50697 * 109.47453 * 180.02562 * 10 9 6 12 12 H 1.08000 * 119.99944 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99811 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00265 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99814 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47240 * 90.00060 * 15 13 11 17 17 H 1.48509 * 109.47127 * 210.00218 * 15 13 11 18 18 H 1.48505 * 109.47217 * 329.99918 * 15 13 11 19 19 C 1.44452 * 122.97768 * 318.77797 * 5 4 2 20 20 C 1.54877 * 109.33141 * 88.92753 * 19 5 4 21 21 C 1.47683 * 109.67633 * 290.10686 * 20 19 5 22 22 O 1.40527 * 109.40206 * 119.79248 * 2 1 3 23 23 H 1.08999 * 109.46844 * 300.20607 * 1 2 3 24 24 H 1.09006 * 109.46360 * 60.20177 * 1 2 3 25 25 H 1.08988 * 109.47567 * 180.20370 * 1 2 3 26 26 H 1.09003 * 109.47122 * 180.11068 * 3 2 1 27 27 H 1.09003 * 109.47075 * 300.10796 * 3 2 1 28 28 H 1.08995 * 109.47418 * 60.10715 * 3 2 1 29 29 H 1.08994 * 109.23065 * 80.18823 * 4 2 1 30 30 H 1.09000 * 109.20143 * 320.79017 * 4 2 1 31 31 H 1.08994 * 109.47285 * 300.00388 * 9 6 5 32 32 H 1.09003 * 109.46894 * 60.00196 * 9 6 5 33 33 H 1.08994 * 109.47319 * 300.00520 * 10 9 6 34 34 H 1.09003 * 109.46788 * 60.00284 * 10 9 6 35 35 H 0.96998 * 119.99662 * 180.02562 * 14 13 11 36 36 H 1.09006 * 109.49342 * 328.96889 * 19 5 4 37 37 H 1.08995 * 109.52000 * 208.90295 * 19 5 4 38 38 H 1.08998 * 109.43528 * 170.04241 * 20 19 5 39 39 H 1.09001 * 109.39827 * 50.15005 * 20 19 5 40 40 H 1.09003 * 108.64979 * 299.71987 * 21 20 19 41 41 H 1.09006 * 108.64386 * 181.88807 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0367 1.4436 0.0000 4 6 2.0426 -0.7233 -1.2628 5 7 3.4414 -1.1756 -1.0758 6 16 3.8693 -2.6738 -1.6365 7 8 2.9543 -2.9268 -2.6939 8 8 5.2646 -2.5698 -1.8843 9 6 3.5521 -3.7874 -0.2402 10 6 3.9122 -5.2201 -0.6383 11 6 3.6480 -6.1453 0.5216 12 1 3.2615 -5.7509 1.4497 13 6 3.8998 -7.4952 0.3978 14 7 4.3710 -7.9754 -0.7323 15 14 3.5717 -8.6422 1.8352 16 1 2.1776 -9.1478 1.7569 17 1 4.5170 -9.7863 1.7814 18 1 3.7597 -7.9043 3.1102 19 6 4.4485 -0.3686 -0.4268 20 6 4.4260 -0.6477 1.0964 21 6 3.1907 -0.0925 1.6855 22 8 1.9968 -0.6586 1.1503 23 1 -0.3633 0.5170 0.8881 24 1 -0.3632 0.5107 -0.8919 25 1 -0.3634 -1.0275 0.0037 26 1 3.1267 1.4461 -0.0020 27 1 1.6706 1.9572 -0.8890 28 1 1.6738 1.9561 0.8909 29 1 1.9965 -0.0406 -2.1112 30 1 1.4095 -1.5877 -1.4627 31 1 4.1593 -3.4833 0.6124 32 1 2.4971 -3.7400 0.0299 33 1 3.3047 -5.5240 -1.4906 34 1 4.9671 -5.2678 -0.9086 35 1 4.5478 -8.9251 -0.8195 36 1 4.2409 0.6863 -0.6065 37 1 5.4304 -0.6195 -0.8281 38 1 5.2926 -0.1801 1.5637 39 1 4.4578 -1.7237 1.2679 40 1 3.1746 0.9834 1.5115 41 1 3.2080 -0.2683 2.7611 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377702342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:46 Heat of formation + Delta-G solvation = -105.089552 kcal Electronic energy + Delta-G solvation = -23288.519614 eV Core-core repulsion = 19910.417485 eV Total energy + Delta-G solvation = -3378.102129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41597 -36.69666 -35.69625 -35.28864 -34.22004 -33.81899 -31.25041 -31.07678 -27.79664 -26.87152 -25.57336 -24.89394 -22.00624 -20.95780 -19.84360 -18.47605 -17.73332 -17.50992 -16.47886 -15.97515 -15.67982 -15.30647 -15.18193 -14.53426 -14.35073 -13.77107 -13.54908 -13.42881 -13.24719 -12.85743 -12.54149 -12.45669 -12.30026 -12.04583 -11.96763 -11.74944 -11.66434 -11.55544 -11.38983 -11.18874 -11.02939 -10.90908 -10.70971 -10.36232 -10.33061 -10.06868 -9.72085 -9.57407 -9.22602 -8.69911 -8.46085 -6.08227 -4.13191 0.83588 3.01320 3.29113 3.35020 3.38260 3.67087 4.31816 4.41305 4.45497 4.57205 4.61160 4.67688 4.81023 4.88761 5.12540 5.16155 5.26166 5.27027 5.38275 5.39095 5.48584 5.54605 5.59722 5.66692 5.70363 5.75328 5.83183 5.88766 5.93014 6.00844 6.16661 6.20482 6.61357 6.79075 7.29812 7.35571 7.41362 7.85566 8.23109 8.90443 9.51251 11.02936 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.005112 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.644403 B = 5475.940116 C = 5919.900767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.100 3.900 3 C -0.196 4.196 4 C 0.108 3.892 5 N -0.994 5.994 6 S 2.585 3.415 7 O -0.967 6.967 8 O -0.967 6.967 9 C -0.584 4.584 10 C 0.028 3.972 11 C -0.517 4.517 12 H 0.062 0.938 13 C 0.057 3.943 14 N -0.892 5.892 15 Si 0.899 3.101 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.104 3.896 20 C -0.184 4.184 21 C 0.046 3.954 22 O -0.354 6.354 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.032 0.968 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 20.724 3.309 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.059 3.941 3 C -0.252 4.252 4 C -0.018 4.018 5 N -0.829 5.829 6 S 2.684 3.316 7 O -0.957 6.957 8 O -0.957 6.957 9 C -0.718 4.718 10 C -0.011 4.011 11 C -0.556 4.556 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.530 5.530 15 Si 0.727 3.273 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.022 4.022 20 C -0.223 4.223 21 C -0.030 4.030 22 O -0.272 6.272 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.162 20.310 2.397 20.870 hybrid contribution -0.213 -0.603 1.347 1.492 sum -4.375 19.707 3.744 20.531 Atomic orbital electron populations 1.21917 0.92504 1.03476 1.02469 1.21666 0.94807 0.91333 0.86327 1.22892 1.03023 0.96388 1.02944 1.22427 0.81312 1.01003 0.97021 1.57314 1.15982 1.34523 1.75041 1.05851 0.74110 0.74064 0.77567 1.93526 1.65256 1.84406 1.52530 1.93510 1.32063 1.85189 1.84976 1.30492 1.10750 1.13581 1.16951 1.18963 0.97872 0.85632 0.98623 1.21013 1.44251 0.91839 0.98531 0.92026 1.25065 0.94959 0.98336 0.96129 1.69961 1.44163 1.13961 1.24937 0.86478 0.78162 0.80287 0.82401 1.20474 1.21046 1.19771 1.21526 0.92469 0.96666 0.91521 1.22226 0.98986 1.03969 0.97122 1.21648 0.84923 0.98522 0.97945 1.87573 1.40476 1.57207 1.41990 0.91696 0.91111 0.91207 0.90149 0.91240 0.91532 0.90922 0.88961 0.86339 0.86061 0.95000 0.95013 0.92594 0.89815 0.88343 0.89388 0.90316 0.91434 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.73 37.16 0.32 -0.98 16 2 C 0.10 1.05 1.09 -89.95 -0.10 0.95 16 3 C -0.20 -1.53 6.80 37.16 0.25 -1.27 16 4 C 0.11 1.34 5.23 -2.44 -0.01 1.33 16 5 N -0.99 -14.22 2.78 -112.74 -0.31 -14.54 16 6 S 2.58 49.20 5.31 -107.50 -0.57 48.63 16 7 O -0.97 -20.82 16.73 -57.54 -0.96 -21.79 16 8 O -0.97 -20.54 16.39 -57.54 -0.94 -21.48 16 9 C -0.58 -11.92 6.00 37.16 0.22 -11.70 16 10 C 0.03 0.74 4.98 -27.89 -0.14 0.60 16 11 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 12 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 15 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.10 1.23 5.57 -4.14 -0.02 1.21 16 20 C -0.18 -1.98 6.03 -28.31 -0.17 -2.15 16 21 C 0.05 0.46 5.82 34.59 0.20 0.66 16 22 O -0.35 -4.40 9.84 -34.10 -0.34 -4.73 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.69 8.13 -51.94 -0.42 0.26 16 26 H 0.08 0.61 3.32 -51.93 -0.17 0.44 16 27 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.07 0.46 7.78 -51.93 -0.40 0.06 16 29 H 0.07 0.78 7.97 -51.93 -0.41 0.37 16 30 H 0.09 1.24 7.10 -51.93 -0.37 0.87 16 31 H 0.12 2.22 6.33 -51.93 -0.33 1.89 16 32 H 0.12 2.33 8.14 -51.92 -0.42 1.90 16 33 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.08 0.77 5.24 -51.93 -0.27 0.49 16 37 H 0.10 1.25 6.69 -51.93 -0.35 0.90 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.01 6.18 -51.93 -0.32 0.69 16 40 H 0.07 0.53 4.51 -51.93 -0.23 0.30 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 324.45 15.07 4.89 4.89 Total: -1.00 -34.99 324.45 -8.58 -43.57 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.21 Total: -0.14 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 0.15 Total: -24.75 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.42 Total: -40.76 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -2.24 Total: -48.00 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 49.20 SS G_CDS: -0.57 Total: 48.63 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.99 -8.58 -43.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377702342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.521 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds