Wall clock time and date at job start Tue Mar 31 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.34057 * 2 1 4 4 C 1.54291 * 109.40442 * 240.19675 * 2 1 3 5 5 N 1.48190 * 110.69349 * 200.49653 * 4 2 1 6 6 S 1.65601 * 118.50926 * 138.79352 * 5 4 2 7 7 O 1.42097 * 104.27663 * 26.05264 * 6 5 4 8 8 O 1.42097 * 104.27308 * 153.90675 * 6 5 4 9 9 C 1.81395 * 104.45146 * 269.97891 * 6 5 4 10 10 C 1.52998 * 109.47449 * 179.97438 * 9 6 5 11 11 C 1.50697 * 109.47453 * 180.02562 * 10 9 6 12 12 H 1.08000 * 119.99944 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99811 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00265 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99814 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47240 * 90.00060 * 15 13 11 17 17 H 1.48509 * 109.47127 * 210.00218 * 15 13 11 18 18 H 1.48505 * 109.47217 * 329.99918 * 15 13 11 19 19 C 1.44452 * 122.97768 * 318.77797 * 5 4 2 20 20 C 1.54877 * 109.33141 * 88.92753 * 19 5 4 21 21 C 1.47683 * 109.67633 * 290.10686 * 20 19 5 22 22 O 1.40527 * 109.40206 * 119.79248 * 2 1 3 23 23 H 1.08999 * 109.46844 * 300.20607 * 1 2 3 24 24 H 1.09006 * 109.46360 * 60.20177 * 1 2 3 25 25 H 1.08988 * 109.47567 * 180.20370 * 1 2 3 26 26 H 1.09003 * 109.47122 * 180.11068 * 3 2 1 27 27 H 1.09003 * 109.47075 * 300.10796 * 3 2 1 28 28 H 1.08995 * 109.47418 * 60.10715 * 3 2 1 29 29 H 1.08994 * 109.23065 * 80.18823 * 4 2 1 30 30 H 1.09000 * 109.20143 * 320.79017 * 4 2 1 31 31 H 1.08994 * 109.47285 * 300.00388 * 9 6 5 32 32 H 1.09003 * 109.46894 * 60.00196 * 9 6 5 33 33 H 1.08994 * 109.47319 * 300.00520 * 10 9 6 34 34 H 1.09003 * 109.46788 * 60.00284 * 10 9 6 35 35 H 0.96998 * 119.99662 * 180.02562 * 14 13 11 36 36 H 1.09006 * 109.49342 * 328.96889 * 19 5 4 37 37 H 1.08995 * 109.52000 * 208.90295 * 19 5 4 38 38 H 1.08998 * 109.43528 * 170.04241 * 20 19 5 39 39 H 1.09001 * 109.39827 * 50.15005 * 20 19 5 40 40 H 1.09003 * 108.64979 * 299.71987 * 21 20 19 41 41 H 1.09006 * 108.64386 * 181.88807 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0367 1.4436 0.0000 4 6 2.0426 -0.7233 -1.2628 5 7 3.4414 -1.1756 -1.0758 6 16 3.8693 -2.6738 -1.6365 7 8 2.9543 -2.9268 -2.6939 8 8 5.2646 -2.5698 -1.8843 9 6 3.5521 -3.7874 -0.2402 10 6 3.9122 -5.2201 -0.6383 11 6 3.6480 -6.1453 0.5216 12 1 3.2615 -5.7509 1.4497 13 6 3.8998 -7.4952 0.3978 14 7 4.3710 -7.9754 -0.7323 15 14 3.5717 -8.6422 1.8352 16 1 2.1776 -9.1478 1.7569 17 1 4.5170 -9.7863 1.7814 18 1 3.7597 -7.9043 3.1102 19 6 4.4485 -0.3686 -0.4268 20 6 4.4260 -0.6477 1.0964 21 6 3.1907 -0.0925 1.6855 22 8 1.9968 -0.6586 1.1503 23 1 -0.3633 0.5170 0.8881 24 1 -0.3632 0.5107 -0.8919 25 1 -0.3634 -1.0275 0.0037 26 1 3.1267 1.4461 -0.0020 27 1 1.6706 1.9572 -0.8890 28 1 1.6738 1.9561 0.8909 29 1 1.9965 -0.0406 -2.1112 30 1 1.4095 -1.5877 -1.4627 31 1 4.1593 -3.4833 0.6124 32 1 2.4971 -3.7400 0.0299 33 1 3.3047 -5.5240 -1.4906 34 1 4.9671 -5.2678 -0.9086 35 1 4.5478 -8.9251 -0.8195 36 1 4.2409 0.6863 -0.6065 37 1 5.4304 -0.6195 -0.8281 38 1 5.2926 -0.1801 1.5637 39 1 4.4578 -1.7237 1.2679 40 1 3.1746 0.9834 1.5115 41 1 3.2080 -0.2683 2.7611 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377702342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:45 Heat of formation + Delta-G solvation = -131.029335 kcal Electronic energy + Delta-G solvation = -23289.644447 eV Core-core repulsion = 19910.417485 eV Total energy + Delta-G solvation = -3379.226962 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.24769 -38.32054 -37.12898 -36.55949 -35.93190 -35.01137 -33.15609 -32.07242 -28.45459 -27.79234 -27.60593 -25.84698 -23.72145 -22.20283 -20.62104 -19.91846 -19.10697 -18.61769 -18.34204 -17.21975 -16.91882 -16.62530 -16.53186 -16.26788 -15.35106 -15.22258 -14.76652 -14.50335 -14.38294 -14.13235 -13.82948 -13.63344 -13.41452 -13.24832 -13.17604 -13.04676 -12.96031 -12.91243 -12.80601 -12.67652 -12.52106 -12.26309 -12.16707 -11.96390 -11.81092 -11.57590 -11.14562 -10.83293 -10.66620 -10.43623 -9.87428 -8.27931 -6.42328 -0.71822 1.38654 1.41074 1.52336 1.67580 2.36525 2.78402 2.92844 3.04892 3.12785 3.57534 3.79040 3.82776 3.92392 4.02937 4.06429 4.10775 4.30721 4.43045 4.45330 4.59665 4.68508 4.72119 4.79471 4.82626 4.88170 4.94380 4.97413 5.10620 5.16518 5.18808 5.23529 5.26583 5.36211 5.46514 5.66083 5.74477 6.04492 6.54416 6.70434 7.27768 8.84541 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.005112 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.644403 B = 5475.940116 C = 5919.900767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.098 3.902 3 C -0.192 4.192 4 C 0.095 3.905 5 N -0.980 5.980 6 S 2.607 3.393 7 O -0.995 6.995 8 O -0.991 6.991 9 C -0.584 4.584 10 C 0.023 3.977 11 C -0.539 4.539 12 H 0.071 0.929 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.975 3.025 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.259 1.259 19 C 0.094 3.906 20 C -0.184 4.184 21 C 0.038 3.962 22 O -0.380 6.380 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.004 0.996 34 H 0.006 0.994 35 H 0.268 0.732 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 23.077 5.087 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.056 3.944 3 C -0.248 4.248 4 C -0.030 4.030 5 N -0.818 5.818 6 S 2.704 3.296 7 O -0.985 6.985 8 O -0.982 6.982 9 C -0.715 4.715 10 C -0.015 4.015 11 C -0.578 4.578 12 H 0.089 0.911 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.798 3.202 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.183 1.183 19 C -0.031 4.031 20 C -0.223 4.223 21 C -0.037 4.037 22 O -0.299 6.299 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.077 0.923 36 H 0.139 0.861 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.854 22.657 4.189 23.547 hybrid contribution -0.007 -1.237 0.760 1.452 sum -4.860 21.419 4.949 22.515 Atomic orbital electron populations 1.21946 0.91621 1.02834 1.03936 1.21791 0.95483 0.92528 0.84563 1.22850 1.03119 0.94361 1.04509 1.22787 0.79611 1.01080 0.99474 1.56961 1.17578 1.32207 1.75091 1.04901 0.73112 0.74848 0.76708 1.93480 1.65886 1.85483 1.53688 1.93469 1.33567 1.85903 1.85217 1.30412 1.11549 1.10754 1.18800 1.18804 0.95766 0.89431 0.97530 1.21469 1.44257 0.92753 0.99318 0.91059 1.26120 0.94411 1.00323 0.99219 1.70103 1.45255 1.14593 1.27412 0.85298 0.78306 0.77772 0.78786 1.19507 1.20486 1.18296 1.21869 0.91149 0.98081 0.92017 1.22277 1.00903 1.02637 0.96490 1.21833 0.83725 1.00080 0.98113 1.87561 1.41394 1.58394 1.42589 0.90679 0.89184 0.92962 0.89825 0.89664 0.90090 0.88766 0.90674 0.84786 0.85129 0.97787 0.97588 0.92297 0.86121 0.89476 0.86505 0.92991 0.88547 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.73 71.98 0.63 -1.66 16 2 C 0.10 1.79 1.09 -10.36 -0.01 1.78 16 3 C -0.19 -2.17 6.80 71.98 0.49 -1.68 16 4 C 0.10 2.22 5.23 86.49 0.45 2.68 16 5 N -0.98 -27.07 2.78 -510.60 -1.42 -28.49 16 6 S 2.61 101.62 5.31 -56.49 -0.30 101.32 16 7 O -1.00 -44.20 16.73 -127.65 -2.14 -46.33 16 8 O -0.99 -43.17 16.39 -127.65 -2.09 -45.26 16 9 C -0.58 -24.61 6.00 71.98 0.43 -24.17 16 10 C 0.02 1.30 4.98 29.85 0.15 1.45 16 11 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 12 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 13 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 14 N -0.93 -58.19 13.29 21.45 0.28 -57.90 16 15 Si 0.98 44.49 29.54 68.60 2.03 46.52 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 19 C 0.09 2.01 5.57 87.40 0.49 2.50 16 20 C -0.18 -3.56 6.03 29.57 0.18 -3.38 16 21 C 0.04 0.66 5.82 70.32 0.41 1.07 16 22 O -0.38 -8.67 9.84 -144.92 -1.43 -10.10 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 26 H 0.08 0.87 3.32 -2.39 -0.01 0.86 16 27 H 0.08 0.74 8.13 -2.39 -0.02 0.72 16 28 H 0.08 0.74 7.78 -2.39 -0.02 0.72 16 29 H 0.09 1.79 7.97 -2.39 -0.02 1.78 16 30 H 0.07 2.01 7.10 -2.39 -0.02 1.99 16 31 H 0.13 5.14 6.33 -2.39 -0.02 5.13 16 32 H 0.13 5.16 8.14 -2.39 -0.02 5.14 16 33 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 35 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 36 H 0.12 1.74 5.24 -2.38 -0.01 1.73 16 37 H 0.09 2.11 6.69 -2.39 -0.02 2.09 16 38 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.05 1.29 6.18 -2.39 -0.01 1.27 16 40 H 0.10 1.10 4.51 -2.39 -0.01 1.09 16 41 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -77.96 324.45 -0.13 -78.09 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 1.02 Total: 14.29 kcal Atomic # 6 Polarization: -56.04 SS G_CDS: 3.91 Total: -52.13 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -1.13 Total: -86.39 kcal Atomic # 8 Polarization: -96.04 SS G_CDS: -5.65 Total: -101.70 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 101.62 SS G_CDS: -0.30 Total: 101.32 kcal Total: -77.96 -0.13 -78.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377702342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.938 kcal (2) G-P(sol) polarization free energy of solvation -77.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds