Wall clock time and date at job start Tue Mar 31 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99827 * 2 1 4 4 C 1.52993 * 109.50033 * 60.05848 * 3 2 1 5 5 C 1.53042 * 109.49266 * 299.99195 * 3 2 1 6 6 C 1.53039 * 109.54198 * 301.41748 * 5 3 2 7 7 C 1.53196 * 109.33748 * 298.62051 * 6 5 3 8 8 N 1.46992 * 108.73878 * 54.61838 * 7 6 5 9 9 S 1.65606 * 120.61198 * 126.38544 * 8 7 6 10 10 O 1.42106 * 104.27394 * 26.09792 * 9 8 7 11 11 O 1.42095 * 104.27697 * 153.95132 * 9 8 7 12 12 C 1.81398 * 104.45222 * 270.02424 * 9 8 7 13 13 C 1.52998 * 109.47303 * 179.97438 * 12 9 8 14 14 C 1.50696 * 109.47056 * 179.97438 * 13 12 9 15 15 H 1.07997 * 120.00566 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99816 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99810 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00045 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47145 * 90.00045 * 18 16 14 20 20 H 1.48500 * 109.47225 * 210.00251 * 18 16 14 21 21 H 1.48505 * 109.46877 * 330.00136 * 18 16 14 22 22 C 1.46922 * 118.75940 * 306.41163 * 8 7 6 23 23 H 1.09008 * 109.46787 * 60.00786 * 1 2 3 24 24 H 1.08997 * 109.47026 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47429 * 300.00735 * 1 2 3 26 26 H 1.08993 * 109.47305 * 299.93496 * 4 3 2 27 27 H 1.08998 * 109.47373 * 59.93850 * 4 3 2 28 28 H 1.09000 * 109.47003 * 179.97438 * 4 3 2 29 29 H 1.09006 * 109.45643 * 181.39381 * 5 3 2 30 30 H 1.08997 * 109.46149 * 61.44007 * 5 3 2 31 31 H 1.09002 * 109.49756 * 58.58775 * 6 5 3 32 32 H 1.09000 * 109.49883 * 178.65518 * 6 5 3 33 33 H 1.09001 * 109.58261 * 174.43824 * 7 6 5 34 34 H 1.08996 * 109.58319 * 294.86146 * 7 6 5 35 35 H 1.08996 * 109.47202 * 299.99979 * 12 9 8 36 36 H 1.09004 * 109.46826 * 60.00129 * 12 9 8 37 37 H 1.08996 * 109.47188 * 300.00249 * 13 12 9 38 38 H 1.09006 * 109.46502 * 60.00014 * 13 12 9 39 39 H 0.96997 * 119.99773 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.58306 * 293.82373 * 22 8 7 41 41 H 1.08994 * 109.70589 * 173.46329 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5603 2.0648 1.2497 5 6 1.5591 2.0654 -1.2495 6 6 1.9792 1.2896 -2.5000 7 6 3.5061 1.1691 -2.5331 8 7 3.9600 0.5704 -1.2697 9 16 4.9292 -0.7724 -1.2732 10 8 5.6099 -0.7101 -2.5190 11 8 5.6401 -0.6946 -0.0453 12 6 3.7699 -2.1675 -1.2502 13 6 4.5533 -3.4817 -1.2522 14 6 3.5902 -4.6406 -1.2325 15 1 2.5259 -4.4581 -1.2203 16 6 4.0680 -5.9340 -1.2302 17 7 5.3642 -6.1562 -1.2446 18 14 2.8742 -7.3706 -1.2065 19 1 2.5408 -7.7601 -2.6001 20 1 3.4988 -8.5218 -0.5067 21 1 1.6339 -6.9717 -0.4938 22 6 3.5374 1.1853 -0.0040 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.4739 2.1522 1.2503 27 1 1.8818 1.5233 2.1393 28 1 2.0043 3.0604 1.2494 29 1 2.0223 3.0520 -1.2615 30 1 0.4746 2.1738 -1.2368 31 1 1.5361 0.2939 -2.4764 32 1 1.6367 1.8192 -3.3890 33 1 3.8044 0.5342 -3.3673 34 1 3.9482 2.1587 -2.6480 35 1 3.1535 -2.1129 -0.3530 36 1 3.1317 -2.1240 -2.1328 37 1 5.1695 -3.5360 -2.1497 38 1 5.1919 -3.5253 -0.3699 39 1 5.7002 -7.0661 -1.2433 40 1 3.9822 2.1762 0.0872 41 1 3.8571 0.5629 0.8317 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408335435.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:17 Heat of formation + Delta-G solvation = -153.192401 kcal Electronic energy + Delta-G solvation = -23141.579067 eV Core-core repulsion = 19761.391042 eV Total energy + Delta-G solvation = -3380.188025 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.73765 -38.23996 -37.32935 -36.98080 -35.88722 -33.23519 -33.11179 -32.73787 -28.21461 -27.58487 -27.34914 -25.45034 -23.59475 -22.86604 -20.76701 -19.86089 -19.10281 -18.33253 -17.60106 -17.07410 -16.84160 -16.53325 -16.43787 -16.14929 -15.68360 -15.08736 -14.77284 -14.69733 -14.45672 -14.24123 -13.71481 -13.59486 -13.48740 -13.22989 -13.05804 -12.93572 -12.92868 -12.88472 -12.79127 -12.72128 -12.25325 -12.18642 -12.15022 -11.95334 -11.73860 -11.63611 -11.32373 -10.96430 -10.64946 -10.33838 -9.85311 -8.25984 -6.39999 -0.67524 1.39150 1.41818 1.53023 1.73521 2.37815 2.83210 2.90514 3.06750 3.17223 3.67506 3.85199 3.93121 4.00316 4.10972 4.16248 4.19040 4.39788 4.54471 4.56083 4.62916 4.69607 4.77119 4.78687 4.82351 4.87146 4.90442 4.98283 5.06301 5.17643 5.24023 5.26862 5.28930 5.41586 5.44433 5.67879 5.68476 6.07258 6.44384 6.72811 7.29674 8.86570 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018224 B = 0.005392 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.064846 B = 5191.224235 C = 5986.712528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.399 6.399 3 C 0.092 3.908 4 C -0.173 4.173 5 C -0.135 4.135 6 C -0.131 4.131 7 C 0.113 3.887 8 N -0.989 5.989 9 S 2.613 3.387 10 O -0.994 6.994 11 O -0.996 6.996 12 C -0.577 4.577 13 C 0.023 3.977 14 C -0.537 4.537 15 H 0.072 0.928 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.975 3.025 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.259 1.259 22 C 0.127 3.873 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.005 0.995 38 H 0.003 0.997 39 H 0.268 0.732 40 H 0.111 0.889 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.013 20.665 1.082 24.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.319 6.319 3 C 0.052 3.948 4 C -0.231 4.231 5 C -0.172 4.172 6 C -0.170 4.170 7 C -0.012 4.012 8 N -0.828 5.828 9 S 2.711 3.289 10 O -0.985 6.985 11 O -0.986 6.986 12 C -0.709 4.709 13 C -0.016 4.016 14 C -0.575 4.575 15 H 0.090 0.910 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.798 3.202 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.183 1.183 22 C 0.002 3.998 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.023 0.977 38 H 0.021 0.979 39 H 0.076 0.924 40 H 0.129 0.871 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.789 20.424 1.064 23.606 hybrid contribution -0.794 -1.253 0.074 1.485 sum -12.583 19.171 1.138 22.960 Atomic orbital electron populations 1.22892 0.80535 1.02866 1.01143 1.88004 1.20791 1.27962 1.95146 1.22046 0.92658 0.83916 0.96211 1.22338 1.02882 1.01355 0.96559 1.22062 1.02375 0.99594 0.93174 1.21873 0.94298 1.01577 0.99277 1.21687 0.95884 0.99977 0.83619 1.57488 1.68947 1.43455 1.12871 1.04682 0.75923 0.75600 0.72673 1.93480 1.72549 1.86654 1.45791 1.93472 1.71418 1.86520 1.47232 1.30282 1.15277 1.13769 1.11593 1.18811 0.95371 0.91429 0.95996 1.21473 0.93614 0.90995 1.51456 0.90990 1.26133 0.97221 1.02528 0.94320 1.70109 1.14388 1.22029 1.50942 0.85297 0.78622 0.77505 0.78731 1.19401 1.20619 1.18301 1.21683 0.93002 1.00638 0.84487 0.92541 0.90441 0.92534 0.90610 0.92313 0.89394 0.88875 0.89868 0.92243 0.88391 0.90261 0.88982 0.84840 0.84958 0.97694 0.97872 0.92355 0.87134 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.21 113.37 1.16 1.54 16 2 O -0.40 -9.57 9.54 -148.98 -1.42 -10.99 16 3 C 0.09 1.71 0.73 -10.72 -0.01 1.70 16 4 C -0.17 -2.33 8.26 71.98 0.59 -1.73 16 5 C -0.13 -1.83 4.28 30.62 0.13 -1.70 16 6 C -0.13 -2.20 5.94 30.67 0.18 -2.02 16 7 C 0.11 2.46 6.32 86.35 0.55 3.01 16 8 N -0.99 -27.67 3.16 -512.91 -1.62 -29.29 16 9 S 2.61 103.12 5.41 -56.49 -0.31 102.81 16 10 O -0.99 -44.09 16.73 -127.65 -2.14 -46.22 16 11 O -1.00 -44.75 16.73 -127.65 -2.14 -46.89 16 12 C -0.58 -24.51 6.12 71.98 0.44 -24.07 16 13 C 0.02 1.27 4.98 29.85 0.15 1.42 16 14 C -0.54 -31.16 9.11 25.60 0.23 -30.92 16 15 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 16 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 17 N -0.94 -58.46 13.29 21.45 0.28 -58.18 16 18 Si 0.98 44.51 29.54 68.60 2.03 46.53 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 C 0.13 2.94 5.27 86.36 0.45 3.39 16 23 H 0.06 0.81 6.45 -2.38 -0.02 0.79 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 25 H 0.06 0.80 6.42 -2.39 -0.02 0.78 16 26 H 0.08 0.83 6.55 -2.39 -0.02 0.81 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.08 0.90 6.62 -2.39 -0.02 0.89 16 31 H 0.06 1.22 7.61 -2.39 -0.02 1.20 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.94 7.10 -2.39 -0.02 1.93 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.13 5.39 8.14 -2.39 -0.02 5.37 16 36 H 0.13 5.08 8.14 -2.39 -0.02 5.06 16 37 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 39 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.08 2.16 7.10 -2.39 -0.02 2.14 16 Total: -1.00 -77.94 335.86 0.03 -77.90 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 1.00 Total: 13.45 kcal Atomic # 6 Polarization: -53.49 SS G_CDS: 4.34 Total: -49.15 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -1.34 Total: -87.47 kcal Atomic # 8 Polarization: -98.40 SS G_CDS: -5.69 Total: -104.09 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 103.12 SS G_CDS: -0.31 Total: 102.81 kcal Total: -77.94 0.03 -77.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408335435.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.287 kcal (2) G-P(sol) polarization free energy of solvation -77.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds