Wall clock time and date at job start Tue Mar 31 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46814 * 2 1 4 4 C 1.50698 * 109.47346 * 239.99656 * 2 1 3 5 5 H 1.07992 * 120.00081 * 240.83609 * 4 2 1 6 6 C 1.37880 * 119.99752 * 60.83341 * 4 2 1 7 7 N 1.31508 * 119.99720 * 194.57471 * 6 4 2 8 8 Si 1.86803 * 120.00147 * 14.58523 * 6 4 2 9 9 H 1.48491 * 109.47151 * 84.44695 * 8 6 4 10 10 H 1.48497 * 109.47116 * 204.45071 * 8 6 4 11 11 H 1.48505 * 109.46659 * 324.44863 * 8 6 4 12 12 C 1.53000 * 109.47046 * 119.99347 * 2 1 3 13 13 S 1.81401 * 109.47369 * 300.00253 * 12 2 1 14 14 O 1.42091 * 110.54403 * 291.62090 * 13 12 2 15 15 O 1.42099 * 110.54339 * 68.37539 * 13 12 2 16 16 N 1.65600 * 104.44749 * 179.97438 * 13 12 2 17 17 C 1.46501 * 119.99673 * 65.00238 * 16 13 12 18 18 C 1.53002 * 110.45813 * 59.29685 * 17 16 13 19 19 C 1.54515 * 110.51162 * 181.89685 * 17 16 13 20 20 C 1.54480 * 104.06085 * 118.64386 * 19 17 16 21 21 O 1.44435 * 104.80115 * 23.98265 * 20 19 17 22 22 C 1.44642 * 105.36694 * 319.56114 * 21 20 19 23 23 H 1.09000 * 109.46623 * 70.23490 * 1 2 3 24 24 H 1.08999 * 109.47289 * 310.23831 * 1 2 3 25 25 H 1.09001 * 109.47078 * 190.23264 * 1 2 3 26 26 H 1.08994 * 109.47517 * 59.99956 * 3 2 1 27 27 H 1.09002 * 109.46852 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46922 * 299.99470 * 3 2 1 29 29 H 0.97008 * 120.00166 * 180.02562 * 7 6 4 30 30 H 1.09008 * 109.46888 * 60.00341 * 12 2 1 31 31 H 1.08994 * 109.47070 * 179.97438 * 12 2 1 32 32 H 0.96998 * 120.00425 * 244.99904 * 16 13 12 33 33 H 1.09007 * 109.47321 * 60.69698 * 18 17 16 34 34 H 1.09005 * 109.47394 * 180.69634 * 18 17 16 35 35 H 1.09001 * 109.47297 * 300.69988 * 18 17 16 36 36 H 1.09000 * 110.51451 * 237.29155 * 19 17 16 37 37 H 1.09005 * 110.50910 * 359.86951 * 19 17 16 38 38 H 1.09002 * 110.37110 * 142.80984 * 20 19 17 39 39 H 1.08996 * 110.37418 * 265.04455 * 20 19 17 40 40 H 1.09000 * 110.34405 * 281.59037 * 22 21 20 41 41 H 1.09004 * 110.50497 * 159.18450 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6421 -1.5963 -1.1313 6 6 1.7136 -0.2295 -2.4826 7 7 1.8970 -0.9848 -3.5434 8 14 1.0213 1.4951 -2.6724 9 1 2.1371 2.4735 -2.7241 10 1 0.2329 1.5766 -3.9282 11 1 0.1434 1.8061 -1.5157 12 6 2.0400 -0.7211 1.2493 13 16 1.4353 0.1341 2.7304 14 8 2.0479 1.4102 2.8544 15 8 0.0280 -0.0181 2.8544 16 7 2.0530 -0.7405 3.9937 17 6 3.5014 -0.7978 4.2060 18 6 4.0661 0.6076 4.4224 19 6 3.8367 -1.7071 5.4094 20 6 4.6951 -2.8368 4.7984 21 8 5.2618 -2.2629 3.6003 22 6 4.1974 -1.4823 3.0087 23 1 -0.3632 0.3475 -0.9672 24 1 -0.3634 0.6638 0.7845 25 1 -0.3633 -1.0113 0.1826 26 1 1.6767 1.9564 0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6731 -0.6464 -4.4245 30 1 1.6767 -1.7489 1.2494 31 1 3.1300 -0.7215 1.2491 32 1 1.4558 -1.2149 4.5931 33 1 3.6061 1.0522 5.3051 34 1 5.1450 0.5476 4.5663 35 1 3.8496 1.2246 3.5503 36 1 4.4068 -1.1561 6.1574 37 1 2.9246 -2.1122 5.8477 38 1 5.4856 -3.1289 5.4898 39 1 4.0715 -3.6959 4.5513 40 1 3.4974 -2.1324 2.4839 41 1 4.6050 -0.7344 2.3285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408461437.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:03 Heat of formation + Delta-G solvation = -92.412955 kcal Electronic energy + Delta-G solvation = -23681.015714 eV Core-core repulsion = 20303.463284 eV Total energy + Delta-G solvation = -3377.552430 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.01895 -36.83479 -36.78065 -35.66342 -35.30293 -31.98569 -30.87680 -29.70449 -27.84245 -26.45046 -26.15027 -25.03509 -23.04808 -20.78054 -19.80618 -18.89016 -17.56576 -16.95092 -16.26487 -16.19251 -15.84505 -15.31644 -15.25167 -14.98623 -14.21470 -13.98875 -13.41257 -13.21957 -13.03664 -12.95086 -12.73216 -12.49363 -12.39652 -12.19130 -11.76652 -11.63148 -11.57490 -11.50774 -11.25447 -11.11088 -10.96252 -10.79746 -10.54217 -10.19272 -10.12889 -10.07865 -9.89410 -9.50089 -9.04867 -8.76600 -8.49137 -6.20799 -4.18416 0.62478 2.91170 3.24027 3.32980 3.37741 3.77924 4.01474 4.15907 4.32575 4.53121 4.54384 4.62026 4.90871 4.97781 5.06877 5.11255 5.32481 5.39249 5.45298 5.50116 5.57534 5.62091 5.69647 5.87005 5.95664 6.02718 6.15887 6.28405 6.40064 6.41229 6.45864 6.52492 6.66823 6.83636 6.97810 7.10200 7.28174 7.60305 8.36843 8.82147 9.43025 10.91653 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.006029 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.379455 B = 4643.324474 C = 5182.113848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.056 3.944 3 C -0.182 4.182 4 C -0.509 4.509 5 H 0.079 0.921 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.873 3.127 9 H -0.280 1.280 10 H -0.301 1.301 11 H -0.246 1.246 12 C -0.586 4.586 13 S 2.587 3.413 14 O -0.957 6.957 15 O -0.963 6.963 16 N -1.115 6.115 17 C 0.145 3.855 18 C -0.177 4.177 19 C -0.150 4.150 20 C 0.042 3.958 21 O -0.364 6.364 22 C 0.013 3.987 23 H 0.067 0.933 24 H 0.036 0.964 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.266 0.734 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.414 0.586 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.470 -1.404 17.439 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.053 3.947 3 C -0.239 4.239 4 C -0.547 4.547 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.524 5.524 8 Si 0.705 3.295 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.172 1.172 12 C -0.718 4.718 13 S 2.685 3.315 14 O -0.947 6.947 15 O -0.953 6.953 16 N -0.873 5.873 17 C 0.056 3.944 18 C -0.236 4.236 19 C -0.189 4.189 20 C -0.035 4.035 21 O -0.281 6.281 22 C -0.065 4.065 23 H 0.086 0.914 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.248 0.752 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.253 -0.589 17.166 17.482 hybrid contribution -0.436 0.097 -0.203 0.490 sum 2.817 -0.491 16.963 17.203 Atomic orbital electron populations 1.22687 0.97065 1.01309 1.01772 1.18224 0.92470 0.91713 0.92273 1.22826 1.02383 0.97827 1.00858 1.20642 1.33989 1.12631 0.87476 0.90325 1.24960 0.94535 0.97255 0.95801 1.69934 1.47791 1.35753 0.98908 0.87450 0.79808 0.85731 0.76521 1.20778 1.22913 1.17229 1.30749 1.12147 1.13145 1.15787 1.05755 0.74370 0.75572 0.75792 1.93507 1.77308 1.38487 1.85419 1.93571 1.29312 1.86668 1.85777 1.55888 1.13004 1.70953 1.47414 1.21539 0.79863 0.97370 0.95634 1.22650 1.00929 0.94365 1.05614 1.23250 1.01328 0.96892 0.97476 1.23439 0.97364 0.95483 0.87218 1.89213 1.34030 1.66256 1.38638 1.24654 0.90841 0.95579 0.95434 0.91393 0.94507 0.92356 0.93131 0.91733 0.92981 0.92400 0.85336 0.85242 0.75223 0.91649 0.91224 0.88025 0.89392 0.89661 0.88785 0.91887 0.90197 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.80 6.95 37.16 0.26 -3.54 16 2 C 0.06 1.25 0.52 -155.66 -0.08 1.17 16 3 C -0.18 -3.97 7.22 37.16 0.27 -3.70 16 4 C -0.51 -13.44 8.62 -34.44 -0.30 -13.73 16 5 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 6 C 0.08 2.16 5.31 -17.82 -0.09 2.07 16 7 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 8 Si 0.87 21.31 22.79 -169.99 -3.87 17.44 16 9 H -0.28 -6.75 7.10 56.52 0.40 -6.35 16 10 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 11 H -0.25 -5.63 4.67 56.52 0.26 -5.36 16 12 C -0.59 -10.37 3.38 37.16 0.13 -10.24 16 13 S 2.59 42.68 4.45 -107.50 -0.48 42.20 16 14 O -0.96 -17.30 12.29 -57.54 -0.71 -18.01 16 15 O -0.96 -18.34 15.93 -57.54 -0.92 -19.25 16 16 N -1.12 -13.51 5.49 1.80 0.01 -13.50 16 17 C 0.15 1.65 1.15 -130.25 -0.15 1.50 16 18 C -0.18 -2.10 7.83 37.16 0.29 -1.81 16 19 C -0.15 -1.27 6.52 -25.16 -0.16 -1.44 16 20 C 0.04 0.38 7.64 37.93 0.29 0.67 16 21 O -0.36 -4.57 11.65 -35.23 -0.41 -4.98 16 22 C 0.01 0.16 4.85 37.93 0.18 0.35 16 23 H 0.07 1.56 4.32 -51.93 -0.22 1.33 16 24 H 0.04 0.77 6.21 -51.93 -0.32 0.44 16 25 H 0.06 1.22 8.11 -51.93 -0.42 0.80 16 26 H 0.05 1.02 5.46 -51.93 -0.28 0.74 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.05 1.18 2.28 -51.93 -0.12 1.07 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.13 2.08 8.04 -51.92 -0.42 1.66 16 31 H 0.13 2.07 5.00 -51.93 -0.26 1.81 16 32 H 0.41 4.05 8.23 -34.47 -0.28 3.77 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 1.42 5.46 -51.93 -0.28 1.14 16 36 H 0.09 0.64 7.73 -51.93 -0.40 0.24 16 37 H 0.08 0.58 7.53 -51.93 -0.39 0.19 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.98 6.35 -51.93 -0.33 0.65 16 41 H 0.11 1.36 6.86 -51.93 -0.36 1.00 16 LS Contribution 304.00 15.07 4.58 4.58 Total: -1.00 -32.55 304.00 -6.29 -38.84 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.90 Total: 6.82 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 0.63 Total: -28.72 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.78 Total: -38.92 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -2.03 Total: -42.24 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -3.87 Total: 17.44 kcal Atomic # 16 Polarization: 42.68 SS G_CDS: -0.48 Total: 42.20 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.55 -6.29 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408461437.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.572 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds