Wall clock time and date at job start Tue Mar 31 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46814 * 2 1 4 4 C 1.50698 * 109.47346 * 239.99656 * 2 1 3 5 5 H 1.07992 * 120.00081 * 240.83609 * 4 2 1 6 6 C 1.37880 * 119.99752 * 60.83341 * 4 2 1 7 7 N 1.31508 * 119.99720 * 194.57471 * 6 4 2 8 8 Si 1.86803 * 120.00147 * 14.58523 * 6 4 2 9 9 H 1.48491 * 109.47151 * 84.44695 * 8 6 4 10 10 H 1.48497 * 109.47116 * 204.45071 * 8 6 4 11 11 H 1.48505 * 109.46659 * 324.44863 * 8 6 4 12 12 C 1.53000 * 109.47046 * 119.99347 * 2 1 3 13 13 S 1.81401 * 109.47369 * 300.00253 * 12 2 1 14 14 O 1.42091 * 110.54403 * 291.62090 * 13 12 2 15 15 O 1.42099 * 110.54339 * 68.37539 * 13 12 2 16 16 N 1.65600 * 104.44749 * 179.97438 * 13 12 2 17 17 C 1.46501 * 119.99673 * 65.00238 * 16 13 12 18 18 C 1.53002 * 110.45813 * 59.29685 * 17 16 13 19 19 C 1.54515 * 110.51162 * 181.89685 * 17 16 13 20 20 C 1.54480 * 104.06085 * 118.64386 * 19 17 16 21 21 O 1.44435 * 104.80115 * 23.98265 * 20 19 17 22 22 C 1.44642 * 105.36694 * 319.56114 * 21 20 19 23 23 H 1.09000 * 109.46623 * 70.23490 * 1 2 3 24 24 H 1.08999 * 109.47289 * 310.23831 * 1 2 3 25 25 H 1.09001 * 109.47078 * 190.23264 * 1 2 3 26 26 H 1.08994 * 109.47517 * 59.99956 * 3 2 1 27 27 H 1.09002 * 109.46852 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46922 * 299.99470 * 3 2 1 29 29 H 0.97008 * 120.00166 * 180.02562 * 7 6 4 30 30 H 1.09008 * 109.46888 * 60.00341 * 12 2 1 31 31 H 1.08994 * 109.47070 * 179.97438 * 12 2 1 32 32 H 0.96998 * 120.00425 * 244.99904 * 16 13 12 33 33 H 1.09007 * 109.47321 * 60.69698 * 18 17 16 34 34 H 1.09005 * 109.47394 * 180.69634 * 18 17 16 35 35 H 1.09001 * 109.47297 * 300.69988 * 18 17 16 36 36 H 1.09000 * 110.51451 * 237.29155 * 19 17 16 37 37 H 1.09005 * 110.50910 * 359.86951 * 19 17 16 38 38 H 1.09002 * 110.37110 * 142.80984 * 20 19 17 39 39 H 1.08996 * 110.37418 * 265.04455 * 20 19 17 40 40 H 1.09000 * 110.34405 * 281.59037 * 22 21 20 41 41 H 1.09004 * 110.50497 * 159.18450 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6421 -1.5963 -1.1313 6 6 1.7136 -0.2295 -2.4826 7 7 1.8970 -0.9848 -3.5434 8 14 1.0213 1.4951 -2.6724 9 1 2.1371 2.4735 -2.7241 10 1 0.2329 1.5766 -3.9282 11 1 0.1434 1.8061 -1.5157 12 6 2.0400 -0.7211 1.2493 13 16 1.4353 0.1341 2.7304 14 8 2.0479 1.4102 2.8544 15 8 0.0280 -0.0181 2.8544 16 7 2.0530 -0.7405 3.9937 17 6 3.5014 -0.7978 4.2060 18 6 4.0661 0.6076 4.4224 19 6 3.8367 -1.7071 5.4094 20 6 4.6951 -2.8368 4.7984 21 8 5.2618 -2.2629 3.6003 22 6 4.1974 -1.4823 3.0087 23 1 -0.3632 0.3475 -0.9672 24 1 -0.3634 0.6638 0.7845 25 1 -0.3633 -1.0113 0.1826 26 1 1.6767 1.9564 0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6731 -0.6464 -4.4245 30 1 1.6767 -1.7489 1.2494 31 1 3.1300 -0.7215 1.2491 32 1 1.4558 -1.2149 4.5931 33 1 3.6061 1.0522 5.3051 34 1 5.1450 0.5476 4.5663 35 1 3.8496 1.2246 3.5503 36 1 4.4068 -1.1561 6.1574 37 1 2.9246 -2.1122 5.8477 38 1 5.4856 -3.1289 5.4898 39 1 4.0715 -3.6959 4.5513 40 1 3.4974 -2.1324 2.4839 41 1 4.6050 -0.7344 2.3285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408461437.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:02 Heat of formation + Delta-G solvation = -118.624361 kcal Electronic energy + Delta-G solvation = -23682.152326 eV Core-core repulsion = 20303.463284 eV Total energy + Delta-G solvation = -3378.689042 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.88025 -38.52716 -38.20037 -37.00992 -36.33989 -34.05800 -31.73990 -30.60512 -29.23646 -28.16837 -27.19213 -27.07612 -23.83817 -21.78524 -21.43296 -20.20061 -18.82584 -18.14269 -17.95142 -17.40728 -17.10258 -16.78532 -16.41971 -16.23526 -15.26642 -15.07432 -14.89910 -14.82386 -14.71150 -14.21478 -14.16384 -13.93916 -13.66549 -13.43115 -13.22194 -12.90648 -12.74749 -12.69690 -12.59239 -12.52974 -12.30150 -12.00591 -11.97595 -11.85023 -11.77945 -11.54252 -10.99425 -10.80895 -10.69010 -10.57368 -10.35314 -8.34707 -6.34156 -0.70190 1.30223 1.34957 1.42961 1.74020 2.29507 2.72149 2.94351 2.99876 3.27121 3.28910 3.67412 3.71899 3.81847 3.99597 4.13577 4.24321 4.28375 4.29291 4.50519 4.57805 4.61656 4.66543 4.68813 4.75988 4.80608 4.85309 4.94493 4.96320 5.09827 5.13784 5.16912 5.37050 5.47367 5.52666 5.62853 5.71927 6.10875 6.26504 6.69092 7.30213 8.81146 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.006029 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.379455 B = 4643.324474 C = 5182.113848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.047 3.953 3 C -0.187 4.187 4 C -0.503 4.503 5 H 0.049 0.951 6 C 0.026 3.974 7 N -0.936 5.936 8 Si 0.917 3.083 9 H -0.275 1.275 10 H -0.307 1.307 11 H -0.221 1.221 12 C -0.597 4.597 13 S 2.612 3.388 14 O -0.971 6.971 15 O -0.986 6.986 16 N -1.097 6.097 17 C 0.142 3.858 18 C -0.180 4.180 19 C -0.143 4.143 20 C 0.034 3.966 21 O -0.385 6.385 22 C 0.005 3.995 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.266 0.734 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.428 0.572 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.389 -0.999 20.283 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.045 3.955 3 C -0.244 4.244 4 C -0.542 4.542 5 H 0.068 0.932 6 C -0.173 4.173 7 N -0.575 5.575 8 Si 0.746 3.254 9 H -0.202 1.202 10 H -0.235 1.235 11 H -0.145 1.145 12 C -0.728 4.728 13 S 2.708 3.292 14 O -0.960 6.960 15 O -0.976 6.976 16 N -0.859 5.859 17 C 0.053 3.947 18 C -0.239 4.239 19 C -0.182 4.182 20 C -0.043 4.043 21 O -0.303 6.303 22 C -0.074 4.074 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.265 0.735 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.163 -0.187 20.027 20.276 hybrid contribution -0.316 -0.142 -0.988 1.047 sum 2.846 -0.329 19.039 19.253 Atomic orbital electron populations 1.22700 0.96892 1.02100 1.01617 1.18190 0.92663 0.92194 0.92495 1.22850 1.03034 0.97341 1.01172 1.20925 1.32402 1.11604 0.89243 0.93239 1.25671 0.95404 1.00480 0.95712 1.70056 1.50330 1.37608 0.99459 0.86720 0.79843 0.81835 0.76993 1.20213 1.23541 1.14532 1.30804 1.13128 1.13628 1.15204 1.04819 0.73498 0.75274 0.75629 1.93503 1.77445 1.39546 1.85534 1.93538 1.30967 1.87028 1.86104 1.55470 1.13846 1.70600 1.45974 1.21668 0.78685 0.97770 0.96619 1.22658 1.02057 0.94235 1.04908 1.23281 1.02425 0.96083 0.96381 1.23717 0.98369 0.95759 0.86406 1.89193 1.34500 1.66523 1.40119 1.24662 0.91074 0.95632 0.95998 0.92492 0.93086 0.91767 0.91446 0.91013 0.93878 0.92520 0.84267 0.84061 0.73461 0.90810 0.89868 0.90255 0.87714 0.87498 0.86669 0.91168 0.90433 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.57 6.95 71.98 0.50 -7.07 16 2 C 0.05 2.06 0.52 -52.93 -0.03 2.03 16 3 C -0.19 -7.89 7.22 71.98 0.52 -7.37 16 4 C -0.50 -26.92 8.62 25.60 0.22 -26.70 16 5 H 0.05 2.86 7.99 -2.91 -0.02 2.84 16 6 C 0.03 1.47 5.31 84.66 0.45 1.92 16 7 N -0.94 -56.84 13.96 21.45 0.30 -56.54 16 8 Si 0.92 43.77 22.79 68.60 1.56 45.33 16 9 H -0.28 -12.79 7.10 99.48 0.71 -12.08 16 10 H -0.31 -14.80 7.11 99.48 0.71 -14.10 16 11 H -0.22 -9.59 4.67 99.48 0.46 -9.12 16 12 C -0.60 -20.49 3.38 71.98 0.24 -20.25 16 13 S 2.61 80.67 4.45 -56.49 -0.25 80.41 16 14 O -0.97 -33.06 12.29 -127.65 -1.57 -34.63 16 15 O -0.99 -35.30 15.93 -127.65 -2.03 -37.33 16 16 N -1.10 -23.49 5.49 -148.20 -0.81 -24.31 16 17 C 0.14 2.83 1.15 4.62 0.01 2.83 16 18 C -0.18 -3.84 7.83 71.98 0.56 -3.27 16 19 C -0.14 -1.87 6.52 31.61 0.21 -1.66 16 20 C 0.03 0.50 7.64 72.49 0.55 1.06 16 21 O -0.38 -9.00 11.65 -148.98 -1.74 -10.73 16 22 C 0.00 0.11 4.85 72.48 0.35 0.46 16 23 H 0.06 2.54 4.32 -2.39 -0.01 2.53 16 24 H 0.05 2.03 6.21 -2.39 -0.01 2.02 16 25 H 0.06 2.63 8.11 -2.39 -0.02 2.61 16 26 H 0.07 2.60 5.46 -2.39 -0.01 2.58 16 27 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.04 1.88 2.28 -2.39 -0.01 1.88 16 29 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 30 H 0.14 4.38 8.04 -2.39 -0.02 4.36 16 31 H 0.14 4.45 5.00 -2.39 -0.01 4.43 16 32 H 0.43 6.89 8.23 -96.74 -0.80 6.10 16 33 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.08 2.09 5.46 -2.39 -0.01 2.07 16 36 H 0.10 1.07 7.73 -2.39 -0.02 1.05 16 37 H 0.11 0.96 7.53 -2.38 -0.02 0.94 16 38 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.81 6.35 -2.39 -0.02 1.79 16 41 H 0.10 2.44 6.86 -2.38 -0.02 2.42 16 Total: -1.00 -70.16 304.00 -0.94 -71.10 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.02 Total: 24.72 kcal Atomic # 6 Polarization: -61.61 SS G_CDS: 3.59 Total: -58.03 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -0.51 Total: -80.84 kcal Atomic # 8 Polarization: -77.36 SS G_CDS: -5.34 Total: -82.70 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.56 Total: 45.33 kcal Atomic # 16 Polarization: 80.67 SS G_CDS: -0.25 Total: 80.41 kcal Total: -70.16 -0.94 -71.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408461437.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.520 kcal (2) G-P(sol) polarization free energy of solvation -70.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds