Wall clock time and date at job start Tue Mar 31 2020 07:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00038 * 2 1 4 4 C 1.53000 * 109.47156 * 175.33514 * 3 2 1 5 5 S 1.81406 * 115.54954 * 38.91873 * 4 3 2 6 6 O 1.42104 * 110.54245 * 166.19471 * 5 4 3 7 7 O 1.42088 * 110.54065 * 302.94830 * 5 4 3 8 8 N 1.65601 * 104.44943 * 54.57335 * 5 4 3 9 9 C 1.46496 * 120.00177 * 66.23289 * 8 5 4 10 10 C 1.53000 * 109.47379 * 163.58765 * 9 8 5 11 11 C 1.53004 * 109.47081 * 300.00462 * 10 9 8 12 12 C 1.53007 * 109.46902 * 59.99991 * 10 9 8 13 13 C 1.50703 * 109.47440 * 180.02562 * 10 9 8 14 14 H 1.07996 * 119.99823 * 358.94973 * 13 10 9 15 15 C 1.37875 * 120.00085 * 178.94691 * 13 10 9 16 16 N 1.31520 * 119.99880 * 4.34660 * 15 13 10 17 17 Si 1.86799 * 120.00239 * 184.35555 * 15 13 10 18 18 H 1.48500 * 109.47198 * 94.95937 * 17 15 13 19 19 H 1.48491 * 109.47246 * 214.96669 * 17 15 13 20 20 H 1.48503 * 109.46605 * 334.96406 * 17 15 13 21 21 C 1.52994 * 117.49997 * 253.24675 * 4 3 2 22 22 C 1.53004 * 117.49916 * 184.58411 * 4 3 2 23 23 H 1.09000 * 109.46773 * 60.00982 * 1 2 3 24 24 H 1.09000 * 109.47148 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47524 * 300.00424 * 1 2 3 26 26 H 1.09006 * 109.46810 * 295.33198 * 3 2 1 27 27 H 1.09002 * 109.47555 * 55.33613 * 3 2 1 28 28 H 0.96998 * 119.99741 * 246.23962 * 8 5 4 29 29 H 1.08999 * 109.47384 * 283.59180 * 9 8 5 30 30 H 1.09005 * 109.47232 * 43.59022 * 9 8 5 31 31 H 1.09001 * 109.47156 * 62.00330 * 11 10 9 32 32 H 1.08999 * 109.46548 * 182.00044 * 11 10 9 33 33 H 1.08993 * 109.46952 * 301.99995 * 11 10 9 34 34 H 1.08999 * 109.46755 * 60.00263 * 12 10 9 35 35 H 1.09000 * 109.47214 * 179.97438 * 12 10 9 36 36 H 1.08994 * 109.47529 * 300.00431 * 12 10 9 37 37 H 0.96997 * 119.99712 * 179.97438 * 16 15 13 38 38 H 1.09000 * 117.50060 * 0.02562 * 21 4 3 39 39 H 1.09003 * 117.50153 * 145.02087 * 21 4 3 40 40 H 1.09002 * 117.49954 * 214.97715 * 22 4 3 41 41 H 1.09000 * 117.49721 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5311 1.1865 0.1173 5 16 4.2833 -0.1771 -0.8130 6 8 5.6920 -0.0083 -0.8937 7 8 3.7156 -1.4198 -0.4227 8 7 3.7560 0.0426 -2.3673 9 6 4.1894 1.2167 -3.1288 10 6 3.9167 0.9886 -4.6169 11 6 4.6895 -0.2426 -5.0942 12 6 2.4184 0.7655 -4.8325 13 6 4.3631 2.1962 -5.4003 14 1 4.7822 3.0485 -4.8864 15 6 4.2365 2.2127 -6.7732 16 7 3.6486 1.2118 -7.3914 17 14 4.9003 3.6565 -7.7551 18 1 6.2679 3.3392 -8.2389 19 1 4.0119 3.9154 -8.9165 20 1 4.9486 4.8627 -6.8902 21 6 4.1680 1.5644 1.4560 22 6 4.3335 2.4832 0.2429 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.7563 1.8161 -0.9289 27 1 1.6241 1.8751 0.8452 28 1 3.1601 -0.6060 -2.7735 29 1 3.6389 2.0939 -2.7888 30 1 5.2568 1.3757 -2.9752 31 1 4.3418 -1.1223 -4.5525 32 1 4.5234 -0.3843 -6.1621 33 1 5.7537 -0.0983 -4.9079 34 1 1.8679 1.6426 -4.4924 35 1 2.2240 0.6035 -5.8927 36 1 2.0959 -0.1080 -4.2659 37 1 3.5592 1.2236 -8.3572 38 1 3.5036 1.8973 2.2534 39 1 5.0394 0.9939 1.7777 40 1 5.3135 2.5167 -0.2330 41 1 3.7778 3.4209 0.2424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416530369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:56 Heat of formation + Delta-G solvation = -92.881455 kcal Electronic energy + Delta-G solvation = -23097.073698 eV Core-core repulsion = 19719.500952 eV Total energy + Delta-G solvation = -3377.572746 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.61098 -37.10830 -36.77931 -36.27723 -35.52380 -33.12335 -30.47197 -28.41204 -25.67834 -25.62480 -25.47380 -24.41768 -22.81359 -22.11370 -18.94108 -18.62670 -17.43970 -16.99808 -16.21617 -15.96901 -15.71100 -15.38945 -15.10129 -14.66916 -14.24070 -13.84292 -13.42255 -13.05554 -12.98814 -12.74556 -12.20021 -11.87430 -11.73370 -11.64772 -11.60623 -11.57398 -11.41691 -11.15242 -11.05544 -10.90654 -10.79122 -10.64655 -10.37940 -10.26070 -10.13662 -9.71166 -9.58584 -9.26996 -8.76052 -8.63447 -8.33163 -5.98774 -4.09337 0.68851 2.86821 3.28498 3.33487 3.36265 3.39229 3.65909 4.08725 4.28201 4.40557 4.47717 4.71586 5.02563 5.11349 5.25871 5.27421 5.28705 5.31694 5.40673 5.45520 5.60505 5.64889 5.78498 5.90153 6.25629 6.52796 6.58566 6.83189 6.98288 6.99893 7.07284 7.14885 7.41175 7.64242 7.68763 7.73967 8.08694 8.20154 8.43908 8.91158 9.56065 11.02181 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020634 B = 0.005116 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.674254 B = 5471.940210 C = 5669.611443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.119 3.881 4 C -0.653 4.653 5 S 2.649 3.351 6 O -0.961 6.961 7 O -0.950 6.950 8 N -1.102 6.102 9 C 0.130 3.870 10 C 0.064 3.936 11 C -0.131 4.131 12 C -0.131 4.131 13 C -0.507 4.507 14 H 0.057 0.943 15 C 0.066 3.934 16 N -0.884 5.884 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.126 4.126 22 C -0.114 4.114 23 H 0.045 0.955 24 H 0.089 0.911 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.416 0.584 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.012 0.988 32 H 0.080 0.920 33 H 0.027 0.973 34 H 0.024 0.976 35 H 0.087 0.913 36 H 0.008 0.992 37 H 0.259 0.741 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 1.722 14.880 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.042 3.958 4 C -0.739 4.739 5 S 2.737 3.263 6 O -0.952 6.952 7 O -0.940 6.940 8 N -0.864 5.864 9 C 0.005 3.995 10 C 0.062 3.938 11 C -0.189 4.189 12 C -0.189 4.189 13 C -0.546 4.546 14 H 0.075 0.925 15 C -0.135 4.135 16 N -0.522 5.522 17 Si 0.719 3.281 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.164 4.164 22 C -0.152 4.152 23 H 0.064 0.936 24 H 0.108 0.892 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.253 0.747 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.106 0.894 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.139 0.861 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.730 0.970 15.101 15.585 hybrid contribution -0.673 1.368 -0.716 1.684 sum -4.402 2.338 14.385 15.224 Atomic orbital electron populations 1.22750 0.80351 1.03189 0.99943 1.87989 1.20242 1.26435 1.95415 1.21541 0.87057 0.85746 1.01505 1.32210 1.05268 1.20382 1.16041 1.03723 0.74191 0.74449 0.73944 1.93580 1.28796 1.86961 1.85821 1.93554 1.79612 1.38300 1.82554 1.55406 1.65538 1.35839 1.29633 1.21592 0.98258 0.84318 0.95379 1.18251 0.93068 0.95042 0.87475 1.21787 0.97952 0.95857 1.03308 1.21841 0.97152 0.96326 1.03535 1.21028 1.41156 1.00900 0.91528 0.92490 1.24888 0.94899 0.95986 0.97748 1.69826 1.42558 1.31003 1.08821 0.86598 0.78897 0.82813 0.79748 1.20756 1.21379 1.19978 1.22915 1.01721 1.02165 0.89592 1.22926 1.00459 0.91686 1.00089 0.93598 0.89210 0.94248 0.91229 0.92496 0.74731 0.93482 0.91701 0.96924 0.90098 0.95421 0.95706 0.89449 0.97293 0.93057 0.87105 0.87509 0.86114 0.86972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.40 9.12 -51.23 -0.47 -5.87 16 3 C 0.12 1.45 6.02 37.16 0.22 1.68 16 4 C -0.65 -8.50 2.55 -90.62 -0.23 -8.74 16 5 S 2.65 45.44 5.17 -107.50 -0.56 44.89 16 6 O -0.96 -18.69 16.98 -57.54 -0.98 -19.67 16 7 O -0.95 -18.65 16.95 -64.45 -1.09 -19.75 16 8 N -1.10 -19.87 5.19 -10.61 -0.06 -19.93 16 9 C 0.13 2.56 4.99 -4.04 -0.02 2.54 16 10 C 0.06 1.47 0.52 -155.65 -0.08 1.39 16 11 C -0.13 -3.12 8.07 37.16 0.30 -2.82 16 12 C -0.13 -2.94 8.09 37.16 0.30 -2.63 16 13 C -0.51 -12.98 8.01 -34.44 -0.28 -13.26 16 14 H 0.06 1.43 7.75 -52.49 -0.41 1.03 16 15 C 0.07 1.73 5.13 -17.82 -0.09 1.63 16 16 N -0.88 -23.63 9.36 55.43 0.52 -23.11 16 17 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C -0.13 -1.28 9.94 -26.69 -0.27 -1.55 16 22 C -0.11 -1.22 9.89 -26.69 -0.26 -1.48 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.56 7.93 -51.93 -0.41 0.15 16 28 H 0.42 7.49 6.48 -34.47 -0.22 7.27 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.31 7.64 -51.93 -0.40 0.92 16 31 H 0.01 0.26 7.29 -51.93 -0.38 -0.12 16 32 H 0.08 2.09 6.10 -51.93 -0.32 1.77 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 2.19 5.99 -51.93 -0.31 1.88 16 36 H 0.01 0.17 6.58 -51.93 -0.34 -0.18 16 37 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.11 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.12 1.35 7.88 -51.93 -0.41 0.94 16 41 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 341.18 15.07 5.14 5.14 Total: -1.00 -31.24 341.18 -8.36 -39.60 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.56 Total: 5.06 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 0.71 Total: -21.77 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.46 Total: -43.04 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -2.54 Total: -45.28 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 45.44 SS G_CDS: -0.56 Total: 44.89 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.24 -8.36 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416530369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.281 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds