Wall clock time and date at job start Tue Mar 31 2020 07:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00038 * 2 1 4 4 C 1.53000 * 109.47156 * 175.33514 * 3 2 1 5 5 S 1.81406 * 115.54954 * 38.91873 * 4 3 2 6 6 O 1.42104 * 110.54245 * 166.19471 * 5 4 3 7 7 O 1.42088 * 110.54065 * 302.94830 * 5 4 3 8 8 N 1.65601 * 104.44943 * 54.57335 * 5 4 3 9 9 C 1.46496 * 120.00177 * 66.23289 * 8 5 4 10 10 C 1.53000 * 109.47379 * 163.58765 * 9 8 5 11 11 C 1.53004 * 109.47081 * 300.00462 * 10 9 8 12 12 C 1.53007 * 109.46902 * 59.99991 * 10 9 8 13 13 C 1.50703 * 109.47440 * 180.02562 * 10 9 8 14 14 H 1.07996 * 119.99823 * 358.94973 * 13 10 9 15 15 C 1.37875 * 120.00085 * 178.94691 * 13 10 9 16 16 N 1.31520 * 119.99880 * 4.34660 * 15 13 10 17 17 Si 1.86799 * 120.00239 * 184.35555 * 15 13 10 18 18 H 1.48500 * 109.47198 * 94.95937 * 17 15 13 19 19 H 1.48491 * 109.47246 * 214.96669 * 17 15 13 20 20 H 1.48503 * 109.46605 * 334.96406 * 17 15 13 21 21 C 1.52994 * 117.49997 * 253.24675 * 4 3 2 22 22 C 1.53004 * 117.49916 * 184.58411 * 4 3 2 23 23 H 1.09000 * 109.46773 * 60.00982 * 1 2 3 24 24 H 1.09000 * 109.47148 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47524 * 300.00424 * 1 2 3 26 26 H 1.09006 * 109.46810 * 295.33198 * 3 2 1 27 27 H 1.09002 * 109.47555 * 55.33613 * 3 2 1 28 28 H 0.96998 * 119.99741 * 246.23962 * 8 5 4 29 29 H 1.08999 * 109.47384 * 283.59180 * 9 8 5 30 30 H 1.09005 * 109.47232 * 43.59022 * 9 8 5 31 31 H 1.09001 * 109.47156 * 62.00330 * 11 10 9 32 32 H 1.08999 * 109.46548 * 182.00044 * 11 10 9 33 33 H 1.08993 * 109.46952 * 301.99995 * 11 10 9 34 34 H 1.08999 * 109.46755 * 60.00263 * 12 10 9 35 35 H 1.09000 * 109.47214 * 179.97438 * 12 10 9 36 36 H 1.08994 * 109.47529 * 300.00431 * 12 10 9 37 37 H 0.96997 * 119.99712 * 179.97438 * 16 15 13 38 38 H 1.09000 * 117.50060 * 0.02562 * 21 4 3 39 39 H 1.09003 * 117.50153 * 145.02087 * 21 4 3 40 40 H 1.09002 * 117.49954 * 214.97715 * 22 4 3 41 41 H 1.09000 * 117.49721 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5311 1.1865 0.1173 5 16 4.2833 -0.1771 -0.8130 6 8 5.6920 -0.0083 -0.8937 7 8 3.7156 -1.4198 -0.4227 8 7 3.7560 0.0426 -2.3673 9 6 4.1894 1.2167 -3.1288 10 6 3.9167 0.9886 -4.6169 11 6 4.6895 -0.2426 -5.0942 12 6 2.4184 0.7655 -4.8325 13 6 4.3631 2.1962 -5.4003 14 1 4.7822 3.0485 -4.8864 15 6 4.2365 2.2127 -6.7732 16 7 3.6486 1.2118 -7.3914 17 14 4.9003 3.6565 -7.7551 18 1 6.2679 3.3392 -8.2389 19 1 4.0119 3.9154 -8.9165 20 1 4.9486 4.8627 -6.8902 21 6 4.1680 1.5644 1.4560 22 6 4.3335 2.4832 0.2429 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.7563 1.8161 -0.9289 27 1 1.6241 1.8751 0.8452 28 1 3.1601 -0.6060 -2.7735 29 1 3.6389 2.0939 -2.7888 30 1 5.2568 1.3757 -2.9752 31 1 4.3418 -1.1223 -4.5525 32 1 4.5234 -0.3843 -6.1621 33 1 5.7537 -0.0983 -4.9079 34 1 1.8679 1.6426 -4.4924 35 1 2.2240 0.6035 -5.8927 36 1 2.0959 -0.1080 -4.2659 37 1 3.5592 1.2236 -8.3572 38 1 3.5036 1.8973 2.2534 39 1 5.0394 0.9939 1.7777 40 1 5.3135 2.5167 -0.2330 41 1 3.7778 3.4209 0.2424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416530369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:55 Heat of formation + Delta-G solvation = -114.484074 kcal Electronic energy + Delta-G solvation = -23098.010458 eV Core-core repulsion = 19719.500952 eV Total energy + Delta-G solvation = -3378.509506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.51723 -38.60636 -38.21689 -37.38593 -36.95389 -34.86106 -32.28412 -29.25031 -27.51033 -27.36257 -26.50200 -26.14862 -23.60275 -23.18440 -20.69825 -20.01923 -18.69298 -18.22915 -17.58669 -17.30447 -16.95558 -16.60235 -16.37408 -16.15813 -15.47608 -15.08645 -14.97504 -14.78521 -14.04240 -13.95862 -13.60040 -13.34644 -13.22538 -13.17772 -13.04450 -12.85335 -12.71464 -12.56513 -12.46898 -12.44065 -12.24862 -12.05954 -12.02453 -11.69177 -11.48181 -11.33574 -11.05543 -10.64842 -10.58365 -10.34627 -10.07300 -7.95685 -6.11851 -0.60153 1.46200 1.49682 1.56965 1.76627 2.22895 2.50483 2.79281 2.91990 3.18111 3.27981 3.58617 3.83664 3.88502 4.29270 4.33752 4.46818 4.53581 4.57117 4.59152 4.61940 4.66158 4.78709 4.84470 4.87805 4.90816 5.03468 5.13372 5.14514 5.26554 5.32075 5.55164 5.72003 5.73156 6.13161 6.17217 6.22778 6.32640 6.50089 6.95575 7.55843 9.03284 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020634 B = 0.005116 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.674254 B = 5471.940210 C = 5669.611443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.116 3.884 4 C -0.656 4.656 5 S 2.647 3.353 6 O -0.996 6.996 7 O -0.982 6.982 8 N -1.106 6.106 9 C 0.142 3.858 10 C 0.053 3.947 11 C -0.125 4.125 12 C -0.120 4.120 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.022 3.978 16 N -0.905 5.905 17 Si 0.946 3.054 18 H -0.285 1.285 19 H -0.288 1.288 20 H -0.266 1.266 21 C -0.113 4.113 22 C -0.107 4.107 23 H 0.050 0.950 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.414 0.586 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.025 0.975 32 H 0.056 0.944 33 H 0.017 0.983 34 H 0.030 0.970 35 H 0.059 0.941 36 H 0.027 0.973 37 H 0.257 0.743 38 H 0.143 0.857 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 3.632 16.781 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C 0.039 3.961 4 C -0.749 4.749 5 S 2.742 3.258 6 O -0.986 6.986 7 O -0.973 6.973 8 N -0.867 5.867 9 C 0.016 3.984 10 C 0.052 3.948 11 C -0.183 4.183 12 C -0.178 4.178 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.177 4.177 16 N -0.544 5.544 17 Si 0.773 3.227 18 H -0.211 1.211 19 H -0.214 1.214 20 H -0.191 1.191 21 C -0.151 4.151 22 C -0.145 4.145 23 H 0.068 0.932 24 H 0.109 0.891 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.250 0.750 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.037 0.963 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.161 0.839 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.489 2.836 16.971 17.782 hybrid contribution -0.440 0.775 -1.231 1.520 sum -4.929 3.612 15.740 16.885 Atomic orbital electron populations 1.22931 0.78867 1.03834 1.01278 1.87956 1.22056 1.27747 1.95669 1.21709 0.86026 0.85455 1.02921 1.31782 1.05997 1.19385 1.17721 1.03421 0.73460 0.75152 0.73779 1.93533 1.31098 1.87715 1.86237 1.93510 1.79852 1.41161 1.82758 1.55302 1.65462 1.35454 1.30442 1.21320 0.98084 0.85586 0.93372 1.18302 0.93212 0.93780 0.89535 1.21699 0.97590 0.97123 1.01916 1.21672 0.96831 0.97401 1.01928 1.21372 1.40889 1.01697 0.92034 0.92380 1.25538 0.95302 0.98053 0.98778 1.69965 1.43363 1.32319 1.08733 0.85737 0.77893 0.80616 0.78486 1.21105 1.21432 1.19067 1.23253 1.01741 1.00789 0.89348 1.23167 0.99848 0.91794 0.99673 0.93180 0.89089 0.91939 0.91264 0.89253 0.74979 0.91395 0.92665 0.95640 0.92493 0.96348 0.95123 0.92262 0.95421 0.93352 0.83858 0.87369 0.86974 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.41 -10.90 9.12 -133.68 -1.22 -12.12 16 3 C 0.12 2.46 6.02 71.98 0.43 2.89 16 4 C -0.66 -15.37 2.55 -10.79 -0.03 -15.40 16 5 S 2.65 89.60 5.17 -56.49 -0.29 89.31 16 6 O -1.00 -38.90 16.98 -127.65 -2.17 -41.07 16 7 O -0.98 -38.78 16.95 -121.04 -2.05 -40.83 16 8 N -1.11 -39.41 5.19 -187.49 -0.97 -40.39 16 9 C 0.14 5.49 4.99 86.38 0.43 5.92 16 10 C 0.05 2.47 0.52 -52.92 -0.03 2.44 16 11 C -0.13 -6.06 8.07 71.98 0.58 -5.48 16 12 C -0.12 -5.36 8.09 71.98 0.58 -4.78 16 13 C -0.52 -26.51 8.01 25.60 0.21 -26.31 16 14 H 0.06 2.87 7.75 -2.91 -0.02 2.85 16 15 C 0.02 1.17 5.13 84.65 0.43 1.60 16 16 N -0.90 -49.02 9.36 21.45 0.20 -48.82 16 17 Si 0.95 41.76 29.54 68.60 2.03 43.78 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 C -0.11 -1.89 9.94 30.62 0.30 -1.58 16 22 C -0.11 -1.91 9.89 30.62 0.30 -1.61 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.09 1.32 7.93 -2.39 -0.02 1.30 16 28 H 0.41 14.87 6.48 -96.75 -0.63 14.25 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.05 2.22 7.64 -2.38 -0.02 2.20 16 31 H 0.02 1.11 7.29 -2.39 -0.02 1.09 16 32 H 0.06 3.01 6.10 -2.39 -0.01 3.00 16 33 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 2.99 5.99 -2.39 -0.01 2.98 16 36 H 0.03 1.08 6.58 -2.39 -0.02 1.07 16 37 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 38 H 0.14 1.52 8.08 -2.39 -0.02 1.50 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.11 2.25 7.88 -2.39 -0.02 2.23 16 41 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -67.73 341.18 0.38 -67.36 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.39 Total: 23.32 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 4.47 Total: -40.56 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -0.77 Total: -89.20 kcal Atomic # 8 Polarization: -88.58 SS G_CDS: -5.44 Total: -94.02 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 89.60 SS G_CDS: -0.29 Total: 89.31 kcal Total: -67.73 0.38 -67.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416530369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.129 kcal (2) G-P(sol) polarization free energy of solvation -67.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds