Wall clock time and date at job start Tue Mar 31 2020 06:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99716 * 2 1 4 4 H 1.09001 * 112.90853 * 21.74750 * 3 2 1 5 5 C 1.53781 * 113.61289 * 250.49295 * 3 2 1 6 6 C 1.53786 * 87.17350 * 270.84487 * 5 3 2 7 7 H 1.08993 * 113.61491 * 89.15923 * 6 5 3 8 8 N 1.46501 * 113.61366 * 220.06429 * 6 5 3 9 9 S 1.65597 * 119.99663 * 245.49282 * 8 6 5 10 10 O 1.42104 * 104.27597 * 181.06792 * 9 8 6 11 11 O 1.42100 * 104.27876 * 308.93021 * 9 8 6 12 12 C 1.81405 * 104.45002 * 65.00028 * 9 8 6 13 13 C 1.53003 * 109.47321 * 179.97438 * 12 9 8 14 14 C 1.50694 * 109.47457 * 179.97438 * 13 12 9 15 15 H 1.08005 * 119.99887 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00371 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99652 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00278 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46923 * 60.00097 * 18 16 14 20 20 H 1.48496 * 109.47084 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47133 * 300.00076 * 18 16 14 22 22 C 1.53782 * 113.61276 * 152.99548 * 3 2 1 23 23 C 1.52996 * 113.61446 * 203.66117 * 22 3 2 24 24 C 1.52998 * 113.61779 * 334.48196 * 22 3 2 25 25 H 1.09002 * 109.47343 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47413 * 300.00122 * 1 2 3 27 27 H 1.08996 * 109.47567 * 60.00424 * 1 2 3 28 28 H 1.09002 * 113.61445 * 25.43486 * 5 3 2 29 29 H 1.09002 * 113.61408 * 156.25217 * 5 3 2 30 30 H 0.97004 * 120.00013 * 65.48581 * 8 6 5 31 31 H 1.08999 * 109.46977 * 299.99903 * 12 9 8 32 32 H 1.08996 * 109.47057 * 59.99583 * 12 9 8 33 33 H 1.09004 * 109.46791 * 300.00246 * 13 12 9 34 34 H 1.09004 * 109.46855 * 59.99423 * 13 12 9 35 35 H 0.97000 * 119.99831 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.47267 * 79.50746 * 23 22 3 37 37 H 1.09002 * 109.47394 * 199.50506 * 23 22 3 38 38 H 1.09003 * 109.47316 * 319.50608 * 23 22 3 39 39 H 1.09004 * 109.46667 * 40.49400 * 24 22 3 40 40 H 1.08995 * 109.47416 * 160.49191 * 24 22 3 41 41 H 1.08999 * 109.47065 * 280.49569 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3307 2.0723 0.3720 5 6 2.6905 1.6768 -1.3282 6 6 3.9738 1.0496 -0.7584 7 1 4.0683 -0.0162 -0.9661 8 7 5.1882 1.8032 -1.0801 9 16 6.3446 1.1321 -2.0571 10 8 7.3638 2.1201 -2.1234 11 8 6.5954 -0.1417 -1.4793 12 6 5.5279 0.9512 -3.6668 13 6 6.5060 0.3342 -4.6686 14 6 5.8274 0.1834 -6.0056 15 1 4.8008 0.4958 -6.1284 16 6 6.5165 -0.3545 -7.0718 17 7 7.7663 -0.7355 -6.9220 18 14 5.6750 -0.5422 -8.7289 19 1 5.2417 0.7915 -9.2178 20 1 6.6244 -1.1408 -9.7012 21 1 4.4901 -1.4257 -8.5851 22 6 3.4076 1.3576 0.6398 23 6 3.7910 2.7434 1.1625 24 6 3.6551 0.2473 1.6630 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 2.2884 1.1427 -2.1891 29 1 2.7663 2.7514 -1.4944 30 1 5.3149 2.6953 -0.7209 31 1 4.6577 0.3031 -3.5619 32 1 5.2105 1.9303 -4.0252 33 1 7.3759 0.9826 -4.7733 34 1 6.8238 -0.6449 -4.3102 35 1 8.2512 -1.1135 -7.6722 36 1 3.3141 2.9123 2.1280 37 1 4.8734 2.8021 1.2768 38 1 3.4586 3.5033 0.4552 39 1 3.2305 -0.6868 1.2952 40 1 4.7276 0.1245 1.8135 41 1 3.1835 0.5133 2.6090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440396395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:32 Heat of formation + Delta-G solvation = -110.466413 kcal Electronic energy + Delta-G solvation = -22315.506755 eV Core-core repulsion = 18937.171468 eV Total energy + Delta-G solvation = -3378.335287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.52551 -36.83588 -36.47900 -35.37652 -33.86022 -32.92547 -31.13939 -30.54364 -27.75230 -26.76297 -25.56036 -24.08350 -22.58816 -21.60644 -19.07572 -18.87562 -17.40670 -17.12396 -16.40644 -15.73838 -15.65453 -15.32004 -15.21920 -14.64615 -14.52501 -14.21961 -13.76800 -13.35183 -13.22471 -12.55898 -12.53312 -12.42323 -12.29443 -12.02884 -11.76179 -11.69980 -11.61335 -11.53869 -11.43984 -11.04747 -11.01976 -10.99547 -10.93741 -10.40173 -10.34462 -10.18026 -9.73127 -9.62479 -9.37060 -8.94514 -8.47745 -6.09960 -4.15421 0.85534 3.20021 3.28584 3.33320 3.35162 3.39300 4.24098 4.28435 4.34230 4.40664 4.61563 4.73787 4.83890 4.97346 5.03671 5.13265 5.17711 5.25107 5.28659 5.42131 5.45090 5.50521 5.51907 5.69812 5.73817 5.78311 5.80842 5.90060 5.92113 6.15322 6.22189 6.38989 6.53085 7.00943 7.14648 7.33265 7.39814 7.82837 8.20442 8.87676 9.49067 11.01127 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.004441 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.671533 B = 6303.650371 C = 7317.888813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.071 3.929 4 H 0.077 0.923 5 C -0.179 4.179 6 C 0.142 3.858 7 H 0.122 0.878 8 N -1.114 6.114 9 S 2.589 3.411 10 O -0.970 6.970 11 O -0.966 6.966 12 C -0.588 4.588 13 C 0.028 3.972 14 C -0.520 4.520 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.891 5.891 18 Si 0.900 3.100 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.086 4.086 23 C -0.132 4.132 24 C -0.135 4.135 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.411 0.589 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.265 0.735 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.359 6.155 16.245 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.012 3.988 4 H 0.095 0.905 5 C -0.218 4.218 6 C 0.034 3.966 7 H 0.140 0.860 8 N -0.870 5.870 9 S 2.687 3.313 10 O -0.961 6.961 11 O -0.956 6.956 12 C -0.721 4.721 13 C -0.011 4.011 14 C -0.559 4.559 15 H 0.079 0.921 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.088 4.088 23 C -0.189 4.189 24 C -0.192 4.192 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.246 0.754 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.196 5.499 16.390 21.749 hybrid contribution -1.196 0.585 -1.246 1.823 sum -14.392 6.084 15.144 21.760 Atomic orbital electron populations 1.22805 0.80980 1.02855 0.99892 1.87892 1.19558 1.26188 1.94485 1.23039 0.93956 0.85256 0.96522 0.90488 1.24068 0.97127 1.02226 0.98418 1.22368 0.82674 0.96594 0.94979 0.86033 1.55794 1.35440 1.29028 1.66711 1.05622 0.74314 0.74092 0.77267 1.93547 1.54835 1.60282 1.87394 1.93546 1.83626 1.42794 1.75620 1.30450 1.12982 1.10187 1.18513 1.18957 0.92827 0.96318 0.92999 1.20964 0.98708 1.42294 0.93967 0.92130 1.25060 0.94926 0.95182 0.99277 1.69946 1.09429 1.41490 1.32019 0.86535 0.79233 0.78457 0.83065 1.20121 1.21078 1.20090 1.22458 0.93979 0.97085 0.95328 1.21571 1.02328 0.94062 1.00932 1.21614 1.01855 0.98270 0.97448 0.89516 0.94146 0.93915 0.89830 0.88536 0.75443 0.86325 0.86179 0.94893 0.94845 0.92495 0.91975 0.91258 0.92023 0.91077 0.92202 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.86 101.05 1.10 1.33 16 2 O -0.36 -3.83 9.22 -35.23 -0.32 -4.15 16 3 C 0.07 0.67 3.78 -25.92 -0.10 0.57 16 4 H 0.08 0.58 7.85 -51.93 -0.41 0.18 16 5 C -0.18 -1.81 7.35 -25.92 -0.19 -2.00 16 6 C 0.14 1.73 3.72 -67.02 -0.25 1.48 16 7 H 0.12 1.67 7.71 -51.93 -0.40 1.27 16 8 N -1.11 -14.65 5.50 -4.12 -0.02 -14.68 16 9 S 2.59 47.06 5.44 -107.50 -0.58 46.48 16 10 O -0.97 -20.38 18.08 -57.54 -1.04 -21.42 16 11 O -0.97 -20.50 17.56 -57.54 -1.01 -21.51 16 12 C -0.59 -11.38 6.01 37.16 0.22 -11.16 16 13 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 14 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 18 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.09 -0.87 1.35 -153.60 -0.21 -1.08 16 23 C -0.13 -1.07 7.90 37.16 0.29 -0.77 16 24 C -0.13 -1.42 9.00 37.16 0.33 -1.08 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.10 0.83 7.63 -51.93 -0.40 0.43 16 30 H 0.41 4.50 7.07 -34.47 -0.24 4.26 16 31 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 32 H 0.12 2.09 8.14 -51.93 -0.42 1.66 16 33 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.59 7.43 -51.93 -0.39 0.20 16 38 H 0.06 0.43 7.32 -51.93 -0.38 0.05 16 39 H 0.07 0.81 7.07 -51.93 -0.37 0.44 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -35.12 347.15 -8.15 -43.27 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.77 Total: 1.80 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 0.65 Total: -25.36 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.71 Total: -40.64 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -2.38 Total: -47.08 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 47.06 SS G_CDS: -0.58 Total: 46.48 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.12 -8.15 -43.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440396395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.194 kcal (2) G-P(sol) polarization free energy of solvation -35.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds