Wall clock time and date at job start Tue Mar 31 2020 06:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99716 * 2 1 4 4 H 1.09001 * 112.90853 * 21.74750 * 3 2 1 5 5 C 1.53781 * 113.61289 * 250.49295 * 3 2 1 6 6 C 1.53786 * 87.17350 * 270.84487 * 5 3 2 7 7 H 1.08993 * 113.61491 * 89.15923 * 6 5 3 8 8 N 1.46501 * 113.61366 * 220.06429 * 6 5 3 9 9 S 1.65597 * 119.99663 * 245.49282 * 8 6 5 10 10 O 1.42104 * 104.27597 * 181.06792 * 9 8 6 11 11 O 1.42100 * 104.27876 * 308.93021 * 9 8 6 12 12 C 1.81405 * 104.45002 * 65.00028 * 9 8 6 13 13 C 1.53003 * 109.47321 * 179.97438 * 12 9 8 14 14 C 1.50694 * 109.47457 * 179.97438 * 13 12 9 15 15 H 1.08005 * 119.99887 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00371 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99652 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00278 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46923 * 60.00097 * 18 16 14 20 20 H 1.48496 * 109.47084 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47133 * 300.00076 * 18 16 14 22 22 C 1.53782 * 113.61276 * 152.99548 * 3 2 1 23 23 C 1.52996 * 113.61446 * 203.66117 * 22 3 2 24 24 C 1.52998 * 113.61779 * 334.48196 * 22 3 2 25 25 H 1.09002 * 109.47343 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47413 * 300.00122 * 1 2 3 27 27 H 1.08996 * 109.47567 * 60.00424 * 1 2 3 28 28 H 1.09002 * 113.61445 * 25.43486 * 5 3 2 29 29 H 1.09002 * 113.61408 * 156.25217 * 5 3 2 30 30 H 0.97004 * 120.00013 * 65.48581 * 8 6 5 31 31 H 1.08999 * 109.46977 * 299.99903 * 12 9 8 32 32 H 1.08996 * 109.47057 * 59.99583 * 12 9 8 33 33 H 1.09004 * 109.46791 * 300.00246 * 13 12 9 34 34 H 1.09004 * 109.46855 * 59.99423 * 13 12 9 35 35 H 0.97000 * 119.99831 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.47267 * 79.50746 * 23 22 3 37 37 H 1.09002 * 109.47394 * 199.50506 * 23 22 3 38 38 H 1.09003 * 109.47316 * 319.50608 * 23 22 3 39 39 H 1.09004 * 109.46667 * 40.49400 * 24 22 3 40 40 H 1.08995 * 109.47416 * 160.49191 * 24 22 3 41 41 H 1.08999 * 109.47065 * 280.49569 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3307 2.0723 0.3720 5 6 2.6905 1.6768 -1.3282 6 6 3.9738 1.0496 -0.7584 7 1 4.0683 -0.0162 -0.9661 8 7 5.1882 1.8032 -1.0801 9 16 6.3446 1.1321 -2.0571 10 8 7.3638 2.1201 -2.1234 11 8 6.5954 -0.1417 -1.4793 12 6 5.5279 0.9512 -3.6668 13 6 6.5060 0.3342 -4.6686 14 6 5.8274 0.1834 -6.0056 15 1 4.8008 0.4958 -6.1284 16 6 6.5165 -0.3545 -7.0718 17 7 7.7663 -0.7355 -6.9220 18 14 5.6750 -0.5422 -8.7289 19 1 5.2417 0.7915 -9.2178 20 1 6.6244 -1.1408 -9.7012 21 1 4.4901 -1.4257 -8.5851 22 6 3.4076 1.3576 0.6398 23 6 3.7910 2.7434 1.1625 24 6 3.6551 0.2473 1.6630 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 2.2884 1.1427 -2.1891 29 1 2.7663 2.7514 -1.4944 30 1 5.3149 2.6953 -0.7209 31 1 4.6577 0.3031 -3.5619 32 1 5.2105 1.9303 -4.0252 33 1 7.3759 0.9826 -4.7733 34 1 6.8238 -0.6449 -4.3102 35 1 8.2512 -1.1135 -7.6722 36 1 3.3141 2.9123 2.1280 37 1 4.8734 2.8021 1.2768 38 1 3.4586 3.5033 0.4552 39 1 3.2305 -0.6868 1.2952 40 1 4.7276 0.1245 1.8135 41 1 3.1835 0.5133 2.6090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440396395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:32 Heat of formation + Delta-G solvation = -137.046970 kcal Electronic energy + Delta-G solvation = -22316.659375 eV Core-core repulsion = 18937.171468 eV Total energy + Delta-G solvation = -3379.487906 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.32489 -38.14547 -37.55269 -37.00252 -35.89240 -33.98708 -33.12540 -31.33371 -28.44573 -27.58339 -27.38144 -24.96498 -23.62354 -23.30036 -20.35564 -19.90781 -19.08641 -18.21084 -17.94559 -17.03695 -16.75473 -16.53333 -16.37758 -16.21595 -15.63546 -15.18048 -15.04868 -14.56980 -14.43609 -13.92681 -13.73773 -13.46586 -13.27247 -13.21099 -13.10694 -13.01820 -12.90446 -12.85911 -12.76264 -12.70790 -12.34465 -12.22805 -12.15678 -11.84870 -11.77623 -11.71086 -11.16123 -10.95751 -10.63647 -10.33221 -10.17013 -8.25473 -6.39738 -0.66238 1.40744 1.44511 1.52668 1.86696 2.38456 2.73866 2.81809 3.07826 3.26612 3.43621 3.59691 3.82455 3.97743 3.99536 4.11996 4.25556 4.31917 4.45204 4.58044 4.65208 4.66928 4.75733 4.79224 4.83855 4.94581 5.00015 5.06796 5.14252 5.18883 5.25043 5.27312 5.28808 5.44144 5.55897 5.68397 6.06389 6.16310 6.37706 6.73553 7.30397 8.86778 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.004441 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.671533 B = 6303.650371 C = 7317.888813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.389 6.389 3 C 0.077 3.923 4 H 0.105 0.895 5 C -0.173 4.173 6 C 0.120 3.880 7 H 0.100 0.900 8 N -1.091 6.091 9 S 2.615 3.385 10 O -0.999 6.999 11 O -1.000 7.000 12 C -0.585 4.585 13 C 0.020 3.980 14 C -0.539 4.539 15 H 0.076 0.924 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.284 1.284 21 H -0.263 1.263 22 C -0.083 4.083 23 C -0.133 4.133 24 C -0.135 4.135 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.425 0.575 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.007 0.993 34 H 0.004 0.996 35 H 0.267 0.733 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.182 7.737 16.546 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.308 6.308 3 C 0.018 3.982 4 H 0.123 0.877 5 C -0.213 4.213 6 C 0.012 3.988 7 H 0.118 0.882 8 N -0.852 5.852 9 S 2.712 3.288 10 O -0.990 6.990 11 O -0.990 6.990 12 C -0.717 4.717 13 C -0.019 4.019 14 C -0.578 4.578 15 H 0.094 0.906 16 C -0.202 4.202 17 N -0.574 5.574 18 Si 0.798 3.202 19 H -0.187 1.187 20 H -0.210 1.210 21 H -0.188 1.188 22 C -0.085 4.085 23 C -0.190 4.190 24 C -0.193 4.193 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.137 0.863 30 H 0.264 0.736 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.025 0.975 34 H 0.023 0.977 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.033 7.094 16.696 24.211 hybrid contribution -0.348 0.070 -1.239 1.289 sum -16.381 7.165 15.456 23.634 Atomic orbital electron populations 1.22969 0.79519 1.03593 1.00967 1.87871 1.21283 1.27097 1.94556 1.23049 0.93919 0.85570 0.95636 0.87725 1.24105 0.95254 1.03248 0.98666 1.22661 0.82693 0.95700 0.97730 0.88244 1.55242 1.35017 1.29677 1.65265 1.04543 0.74259 0.73075 0.76902 1.93498 1.56821 1.60866 1.87790 1.93503 1.84499 1.44873 1.76123 1.30332 1.12055 1.11356 1.17942 1.18820 0.93584 0.94851 0.94608 1.21480 0.99510 1.41977 0.94860 0.90603 1.26124 0.95532 0.94682 1.03861 1.70101 1.11305 1.42633 1.33405 0.85357 0.78208 0.79082 0.77560 1.18682 1.20952 1.18809 1.22526 0.94314 0.98006 0.93680 1.21625 1.02151 0.92946 1.02276 1.21609 1.00937 0.98135 0.98595 0.89129 0.92542 0.93273 0.90442 0.86338 0.73644 0.84467 0.83734 0.97517 0.97739 0.92393 0.90252 0.91920 0.90336 0.92508 0.93643 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.86 113.37 1.23 1.55 16 2 O -0.39 -7.52 9.22 -148.98 -1.37 -8.89 16 3 C 0.08 1.23 3.78 31.12 0.12 1.35 16 4 H 0.11 1.12 7.85 -2.39 -0.02 1.10 16 5 C -0.17 -3.04 7.35 31.12 0.23 -2.81 16 6 C 0.12 2.77 3.72 45.58 0.17 2.94 16 7 H 0.10 2.76 7.71 -2.39 -0.02 2.74 16 8 N -1.09 -27.39 5.50 -166.94 -0.92 -28.31 16 9 S 2.62 96.07 5.44 -56.49 -0.31 95.76 16 10 O -1.00 -42.45 18.08 -127.65 -2.31 -44.75 16 11 O -1.00 -43.83 17.56 -127.65 -2.24 -46.07 16 12 C -0.58 -22.59 6.01 71.98 0.43 -22.15 16 13 C 0.02 1.08 4.98 29.85 0.15 1.23 16 14 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16 15 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 16 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 17 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 18 Si 0.97 43.54 29.54 68.60 2.03 45.56 16 19 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 C -0.08 -1.49 1.35 -51.59 -0.07 -1.56 16 23 C -0.13 -1.72 7.90 71.98 0.57 -1.16 16 24 C -0.14 -2.72 9.00 71.98 0.65 -2.07 16 25 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.12 1.56 7.63 -2.39 -0.02 1.54 16 30 H 0.43 8.45 7.07 -96.74 -0.68 7.76 16 31 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 32 H 0.14 4.82 8.14 -2.39 -0.02 4.80 16 33 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.91 7.43 -2.39 -0.02 0.89 16 38 H 0.08 0.77 7.32 -2.39 -0.02 0.75 16 39 H 0.06 1.29 7.07 -2.38 -0.02 1.27 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -77.64 347.15 -0.34 -77.98 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.32 Total: 18.42 kcal Atomic # 6 Polarization: -56.61 SS G_CDS: 4.17 Total: -52.44 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -0.63 Total: -85.59 kcal Atomic # 8 Polarization: -93.79 SS G_CDS: -5.92 Total: -99.71 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 96.07 SS G_CDS: -0.31 Total: 95.76 kcal Total: -77.64 -0.34 -77.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440396395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.063 kcal (2) G-P(sol) polarization free energy of solvation -77.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds