Wall clock time and date at job start Tue Mar 31 2020 06:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.08995 * 112.84884 * 338.30473 * 3 2 1 5 5 C 1.53786 * 113.61712 * 109.50282 * 3 2 1 6 6 C 1.53776 * 87.08111 * 139.97743 * 5 3 2 7 7 H 1.08994 * 113.61576 * 220.01346 * 6 5 3 8 8 N 1.46504 * 113.61053 * 89.19964 * 6 5 3 9 9 S 1.65604 * 119.99727 * 114.50377 * 8 6 5 10 10 O 1.42098 * 104.27531 * 181.07036 * 9 8 6 11 11 O 1.42105 * 104.27874 * 308.92849 * 9 8 6 12 12 C 1.81399 * 104.45032 * 64.99872 * 9 8 6 13 13 C 1.52995 * 109.47146 * 179.97438 * 12 9 8 14 14 C 1.50707 * 109.47240 * 180.02562 * 13 12 9 15 15 H 1.08007 * 119.99515 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00013 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00420 * 359.97438 * 16 14 13 18 18 Si 1.86812 * 119.99994 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46693 * 89.99763 * 18 16 14 20 20 H 1.48499 * 109.47163 * 209.99834 * 18 16 14 21 21 H 1.48501 * 109.46538 * 329.99862 * 18 16 14 22 22 C 1.53780 * 87.08361 * 334.56766 * 6 5 3 23 23 C 1.52998 * 113.61451 * 270.88087 * 22 6 5 24 24 C 1.53006 * 113.61124 * 139.97735 * 22 6 5 25 25 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 26 26 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 28 28 H 1.08998 * 113.61019 * 254.53294 * 5 3 2 29 29 H 1.09004 * 113.61059 * 25.42760 * 5 3 2 30 30 H 0.97001 * 120.00383 * 294.50344 * 8 6 5 31 31 H 1.08996 * 109.47231 * 300.00341 * 12 9 8 32 32 H 1.09005 * 109.46960 * 59.99765 * 12 9 8 33 33 H 1.09000 * 109.47562 * 299.99576 * 13 12 9 34 34 H 1.08997 * 109.47241 * 60.00428 * 13 12 9 35 35 H 0.96997 * 120.00001 * 180.02562 * 17 16 14 36 36 H 1.08995 * 109.46811 * 177.00193 * 23 22 6 37 37 H 1.08990 * 109.47022 * 297.00472 * 23 22 6 38 38 H 1.09003 * 109.46734 * 57.00651 * 23 22 6 39 39 H 1.08991 * 109.47526 * 302.99762 * 24 22 6 40 40 H 1.08997 * 109.46757 * 63.00461 * 24 22 6 41 41 H 1.09006 * 109.46798 * 182.99555 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3298 2.0717 -0.3713 5 6 2.6906 1.6769 1.3282 6 6 3.8010 2.3278 0.4867 7 1 4.8033 2.1574 0.8797 8 7 3.5468 3.7347 0.1671 9 16 4.5340 4.9145 0.7803 10 8 3.9780 6.1266 0.2896 11 8 4.5820 4.6419 2.1741 12 6 6.1474 4.5981 0.0139 13 6 7.1583 5.6356 0.5066 14 6 8.4985 5.3731 -0.1306 15 1 8.6175 4.5485 -0.8179 16 6 9.5730 6.1850 0.1646 17 7 9.4283 7.1889 1.0019 18 14 11.2346 5.8593 -0.6247 19 1 11.3328 6.6131 -1.9003 20 1 12.3142 6.2994 0.2950 21 1 11.3772 4.4062 -0.8960 22 6 3.4078 1.3575 -0.6397 23 6 4.1554 0.0236 -0.5884 24 6 3.4218 1.9951 -2.0305 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 2.1215 2.3889 1.9260 29 1 3.0271 0.8139 1.9027 30 1 2.8002 3.9753 -0.4036 31 1 6.4893 3.5995 0.2859 32 1 6.0547 4.6677 -1.0699 33 1 6.8163 6.6341 0.2341 34 1 7.2511 5.5664 1.5904 35 1 10.1842 7.7603 1.2092 36 1 3.7885 -0.6291 -1.3805 37 1 5.2220 0.1994 -0.7273 38 1 3.9880 -0.4497 0.3791 39 1 2.7570 2.8587 -2.0410 40 1 4.4353 2.3136 -2.2738 41 1 3.0830 1.2668 -2.7674 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440396632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:34 Heat of formation + Delta-G solvation = -110.779212 kcal Electronic energy + Delta-G solvation = -22280.066941 eV Core-core repulsion = 18901.718090 eV Total energy + Delta-G solvation = -3378.348851 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55217 -36.90572 -36.54793 -35.44760 -33.90048 -32.94588 -31.17438 -30.48191 -27.47799 -27.06388 -25.60966 -24.10496 -22.62503 -21.68328 -19.10060 -18.93306 -17.57890 -16.77048 -16.40763 -16.00205 -15.57954 -15.44685 -15.32764 -14.87361 -14.55141 -13.89319 -13.57338 -13.39885 -13.28175 -13.14688 -12.53849 -12.35440 -12.21965 -11.89443 -11.76617 -11.70619 -11.64035 -11.57042 -11.50539 -11.09937 -11.07974 -10.96834 -10.95197 -10.45085 -10.40651 -10.28131 -9.78028 -9.53781 -9.44469 -9.02346 -8.50778 -6.12880 -4.18520 0.76821 3.07644 3.25861 3.32187 3.34808 3.57829 4.10848 4.24491 4.34781 4.39568 4.55342 4.67911 4.77560 5.01554 5.04782 5.07753 5.15213 5.19853 5.22432 5.39148 5.47217 5.53061 5.59903 5.64690 5.73638 5.74359 5.86195 5.88181 5.91322 6.08823 6.19042 6.33181 6.48176 6.98379 7.07785 7.29455 7.35486 7.80054 8.16851 8.84918 9.46366 10.98154 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024546 B = 0.003998 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.437987 B = 7001.292204 C = 7651.966663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.068 3.932 4 H 0.086 0.914 5 C -0.167 4.167 6 C 0.138 3.862 7 H 0.109 0.891 8 N -1.108 6.108 9 S 2.591 3.409 10 O -0.967 6.967 11 O -0.963 6.963 12 C -0.588 4.588 13 C 0.028 3.972 14 C -0.520 4.520 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.086 4.086 23 C -0.119 4.119 24 C -0.138 4.138 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.411 0.589 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.265 0.735 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.755 -14.287 -4.150 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C 0.010 3.990 4 H 0.103 0.897 5 C -0.207 4.207 6 C 0.029 3.971 7 H 0.127 0.873 8 N -0.863 5.863 9 S 2.689 3.311 10 O -0.958 6.958 11 O -0.953 6.953 12 C -0.721 4.721 13 C -0.011 4.011 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.088 4.088 23 C -0.177 4.177 24 C -0.195 4.195 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.245 0.755 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.711 -13.669 -3.304 21.085 hybrid contribution 0.676 -0.119 -1.071 1.272 sum -15.035 -13.788 -4.375 20.864 Atomic orbital electron populations 1.22763 0.81613 1.02495 0.99844 1.87934 1.19150 1.27380 1.94578 1.23941 0.93433 0.84921 0.96673 0.89658 1.23946 0.98237 1.01244 0.97248 1.21488 0.99471 0.80308 0.95783 0.87345 1.55704 1.45419 1.17591 1.67583 1.05644 0.77230 0.72962 0.75276 1.93555 1.77056 1.43317 1.81843 1.93555 1.86952 1.84403 1.30419 1.30444 1.18424 1.10798 1.12484 1.18966 0.92883 0.91732 0.97557 1.21000 0.93393 1.14362 1.27184 0.92023 1.25069 0.99359 0.94971 0.95087 1.69955 1.31731 1.17104 1.34067 0.86472 0.83090 0.78609 0.79127 1.20481 1.21015 1.19738 1.22540 0.94673 0.96396 0.95226 1.21412 0.99249 0.94201 1.02847 1.21710 1.02761 1.00143 0.94933 0.94130 0.89887 0.94226 0.90325 0.88202 0.75546 0.86297 0.86037 0.94861 0.94812 0.92526 0.91881 0.92049 0.91760 0.92513 0.91456 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.86 101.05 1.10 1.32 16 2 O -0.37 -3.74 9.86 -35.23 -0.35 -4.08 16 3 C 0.07 0.66 3.55 -25.92 -0.09 0.57 16 4 H 0.09 0.75 7.76 -51.93 -0.40 0.35 16 5 C -0.17 -1.80 7.36 -25.92 -0.19 -1.99 16 6 C 0.14 1.58 3.75 -67.12 -0.25 1.33 16 7 H 0.11 1.23 7.63 -51.93 -0.40 0.83 16 8 N -1.11 -13.86 5.02 -4.20 -0.02 -13.88 16 9 S 2.59 45.15 5.41 -107.50 -0.58 44.57 16 10 O -0.97 -19.70 18.08 -57.54 -1.04 -20.74 16 11 O -0.96 -19.69 17.82 -57.54 -1.03 -20.71 16 12 C -0.59 -10.93 6.01 37.16 0.22 -10.71 16 13 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 14 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 18 Si 0.90 21.09 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 22 C -0.09 -0.85 1.34 -153.69 -0.21 -1.05 16 23 C -0.12 -1.11 8.42 37.16 0.31 -0.80 16 24 C -0.14 -1.26 8.64 37.16 0.32 -0.94 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.10 1.02 7.63 -51.93 -0.40 0.62 16 30 H 0.41 4.30 7.46 -34.47 -0.26 4.04 16 31 H 0.12 1.96 7.75 -51.93 -0.40 1.56 16 32 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 33 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.60 7.25 -51.93 -0.38 0.22 16 39 H 0.06 0.48 6.70 -51.93 -0.35 0.13 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -34.53 347.60 -8.17 -42.69 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.77 Total: 1.25 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 0.66 Total: -24.73 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.72 Total: -39.54 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -2.41 Total: -45.54 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 45.15 SS G_CDS: -0.58 Total: 44.57 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.53 -8.17 -42.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440396632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.086 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds