Wall clock time and date at job start Tue Mar 31 2020 07:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00188 * 2 1 4 4 C 1.52995 * 109.47334 * 59.99301 * 3 2 1 5 5 C 1.52999 * 109.46814 * 299.99409 * 3 2 1 6 6 C 1.52999 * 109.47257 * 179.97438 * 3 2 1 7 7 N 1.46497 * 109.47167 * 64.99621 * 6 3 2 8 8 S 1.65602 * 119.99699 * 165.27707 * 7 6 3 9 9 O 1.42108 * 104.27382 * 180.79762 * 8 7 6 10 10 O 1.42093 * 104.27799 * 308.65309 * 8 7 6 11 11 C 1.81394 * 104.45036 * 64.72636 * 8 7 6 12 12 C 1.52998 * 109.47299 * 173.87111 * 11 8 7 13 13 C 1.50699 * 115.54907 * 65.26885 * 12 11 8 14 14 H 1.07999 * 120.00357 * 268.54409 * 13 12 11 15 15 C 1.37880 * 119.99986 * 88.55068 * 13 12 11 16 16 N 1.31511 * 120.00224 * 174.70141 * 15 13 12 17 17 Si 1.86801 * 120.00053 * 354.69864 * 15 13 12 18 18 H 1.48499 * 109.47053 * 92.55135 * 17 15 13 19 19 H 1.48496 * 109.47263 * 212.55623 * 17 15 13 20 20 H 1.48498 * 109.46965 * 332.55652 * 17 15 13 21 21 C 1.53004 * 117.50138 * 279.60087 * 12 11 8 22 22 C 1.53000 * 117.50175 * 210.93986 * 12 11 8 23 23 H 1.08998 * 109.47448 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47247 * 300.00810 * 1 2 3 25 25 H 1.09010 * 109.47105 * 60.00241 * 1 2 3 26 26 H 1.08998 * 109.47238 * 179.97438 * 4 3 2 27 27 H 1.09003 * 109.47432 * 300.00813 * 4 3 2 28 28 H 1.09005 * 109.46844 * 60.00304 * 4 3 2 29 29 H 1.08996 * 109.47712 * 300.00250 * 5 3 2 30 30 H 1.09004 * 109.46871 * 60.00483 * 5 3 2 31 31 H 1.09001 * 109.47169 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.46558 * 304.99871 * 6 3 2 33 33 H 1.08992 * 109.46928 * 184.99876 * 6 3 2 34 34 H 0.97002 * 120.00318 * 345.00345 * 7 6 3 35 35 H 1.08996 * 109.47300 * 293.87248 * 11 8 7 36 36 H 1.08999 * 109.47414 * 53.87300 * 11 8 7 37 37 H 0.96997 * 120.00232 * 180.02562 * 16 15 13 38 38 H 1.09003 * 117.49542 * 0.02562 * 21 12 11 39 39 H 1.09000 * 117.49964 * 145.01302 * 21 12 11 40 40 H 1.08997 * 117.50053 * 214.97519 * 22 12 11 41 41 H 1.08998 * 117.49690 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5587 2.0648 1.2491 5 6 1.5589 2.0646 -1.2493 6 6 3.5354 1.1846 0.0006 7 7 3.9767 0.5639 -1.2508 8 16 5.5711 0.6339 -1.6926 9 8 5.6187 -0.0422 -2.9416 10 8 5.9022 2.0121 -1.5926 11 6 6.4366 -0.3228 -0.4175 12 6 7.9120 -0.4621 -0.7979 13 6 8.7004 0.8219 -0.8242 14 1 8.7812 1.3873 -1.7409 15 6 9.3187 1.2749 0.3219 16 7 10.0918 2.3378 0.2758 17 14 9.0583 0.3789 1.9401 18 1 10.1302 -0.6322 2.1242 19 1 9.1009 1.3547 3.0587 20 1 7.7368 -0.2981 1.9239 21 6 8.2790 -1.5376 -1.8224 22 6 8.6411 -1.7296 -0.3476 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 2.0024 3.0604 1.2493 27 1 0.4721 2.1508 1.2491 28 1 1.8803 1.5239 2.1392 29 1 1.8805 1.5237 -2.1393 30 1 0.4722 2.1507 -1.2493 31 1 2.0019 3.0605 -1.2492 32 1 3.8507 0.5685 0.8427 33 1 3.9784 2.1765 0.0902 34 1 3.3356 0.1084 -1.8187 35 1 6.3553 0.1912 0.5402 36 1 5.9870 -1.3125 -0.3380 37 1 10.5271 2.6563 1.0820 38 1 7.4692 -2.1456 -2.2258 39 1 9.0909 -1.3165 -2.5153 40 1 9.6911 -1.6348 -0.0708 41 1 8.0698 -2.4641 0.2200 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451261679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:58 Heat of formation + Delta-G solvation = -93.483346 kcal Electronic energy + Delta-G solvation = -22779.317170 eV Core-core repulsion = 19401.718324 eV Total energy + Delta-G solvation = -3377.598846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.37606 -37.10270 -36.31409 -35.25281 -34.98177 -32.15217 -32.02168 -28.48622 -27.71116 -27.37234 -25.51315 -25.21919 -21.69301 -20.31161 -19.56727 -18.62375 -17.21415 -16.95667 -16.44863 -16.07263 -15.41182 -15.22600 -15.13211 -14.89678 -14.21081 -13.87043 -13.71321 -13.33842 -12.98683 -12.94904 -12.62817 -12.49845 -12.28369 -12.16879 -11.90999 -11.53658 -11.39840 -11.34580 -11.19676 -11.16896 -10.91181 -10.64074 -10.62084 -10.35046 -10.08938 -9.79598 -9.72656 -9.23947 -9.13578 -8.65056 -8.42903 -6.15690 -4.22877 0.98994 3.23210 3.33006 3.33979 3.38094 3.56627 4.36043 4.40228 4.52307 4.66130 4.75035 4.84231 4.94693 5.08332 5.10692 5.13309 5.30324 5.32861 5.38651 5.47162 5.51744 5.58634 5.63327 5.75190 5.82868 5.85770 5.95185 6.02294 6.06701 6.15821 6.23320 6.45466 6.68120 6.90346 7.01478 7.08623 7.27530 7.61473 8.38469 8.89893 9.45658 10.95800 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020281 B = 0.005384 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.257107 B = 5199.549497 C = 5552.364667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.376 6.376 3 C 0.105 3.895 4 C -0.180 4.180 5 C -0.179 4.179 6 C 0.130 3.870 7 N -1.127 6.127 8 S 2.616 3.384 9 O -0.969 6.969 10 O -0.941 6.941 11 C -0.577 4.577 12 C 0.001 3.999 13 C -0.508 4.508 14 H 0.087 0.913 15 C 0.089 3.911 16 N -0.883 5.883 17 Si 0.873 3.127 18 H -0.276 1.276 19 H -0.291 1.291 20 H -0.256 1.256 21 C -0.177 4.177 22 C -0.185 4.185 23 H 0.083 0.917 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.414 0.586 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.267 0.733 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.807 -4.049 2.470 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.295 6.295 3 C 0.065 3.935 4 C -0.238 4.238 5 C -0.236 4.236 6 C 0.004 3.996 7 N -0.885 5.885 8 S 2.711 3.289 9 O -0.959 6.959 10 O -0.931 6.931 11 C -0.709 4.709 12 C -0.002 4.002 13 C -0.545 4.545 14 H 0.105 0.895 15 C -0.116 4.116 16 N -0.518 5.518 17 Si 0.701 3.299 18 H -0.201 1.201 19 H -0.217 1.217 20 H -0.180 1.180 21 C -0.214 4.214 22 C -0.224 4.224 23 H 0.102 0.898 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.247 0.753 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.117 -3.488 1.934 18.551 hybrid contribution -0.606 -0.834 1.470 1.795 sum -18.723 -4.322 3.404 19.515 Atomic orbital electron populations 1.22789 0.81680 1.02550 1.00158 1.87992 1.19351 1.27105 1.95030 1.21680 0.93095 0.83657 0.95091 1.22399 1.01995 1.01444 0.97916 1.22408 1.01332 1.01621 0.98287 1.21290 0.92322 0.99431 0.86601 1.55900 1.28416 1.71627 1.32574 1.04895 0.72298 0.75908 0.75804 1.93517 1.85477 1.77149 1.39788 1.93573 1.81965 1.30844 1.86686 1.30298 1.09593 1.13021 1.17965 1.18864 0.88291 0.91889 1.01156 1.20343 1.31427 1.03927 0.98801 0.89534 1.24944 0.93595 0.94345 0.98717 1.69895 1.29136 1.23686 1.29127 0.86934 0.80037 0.79594 0.83375 1.20147 1.21713 1.18043 1.23022 1.03262 1.03219 0.91908 1.22982 1.01185 1.00656 0.97581 0.89833 0.93849 0.93764 0.90732 0.91795 0.91294 0.91228 0.92204 0.90770 0.91157 0.88599 0.75258 0.85692 0.87382 0.92318 0.89986 0.88656 0.88951 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.21 101.05 1.03 1.23 16 2 O -0.38 -4.17 10.15 -35.23 -0.36 -4.53 16 3 C 0.11 1.12 0.79 -90.62 -0.07 1.05 16 4 C -0.18 -1.55 8.25 37.16 0.31 -1.24 16 5 C -0.18 -1.78 8.03 37.16 0.30 -1.48 16 6 C 0.13 1.69 5.29 -4.04 -0.02 1.67 16 7 N -1.13 -16.53 5.29 -10.62 -0.06 -16.58 16 8 S 2.62 51.29 5.19 -107.50 -0.56 50.73 16 9 O -0.97 -20.83 18.08 -57.54 -1.04 -21.87 16 10 O -0.94 -22.06 17.18 -57.54 -0.99 -23.05 16 11 C -0.58 -11.36 5.54 37.16 0.21 -11.15 16 12 C 0.00 0.02 0.79 -155.66 -0.12 -0.11 16 13 C -0.51 -14.22 8.77 -34.44 -0.30 -14.52 16 14 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 15 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 16 N -0.88 -26.72 13.96 55.43 0.77 -25.95 16 17 Si 0.87 20.97 24.96 -169.99 -4.24 16.73 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.26 -5.64 5.68 56.52 0.32 -5.32 16 21 C -0.18 -3.70 9.96 -26.69 -0.27 -3.97 16 22 C -0.19 -3.89 7.67 -26.69 -0.20 -4.09 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.30 6.42 -51.93 -0.33 -0.04 16 25 H 0.04 0.32 6.42 -51.92 -0.33 -0.02 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.74 6.89 -51.93 -0.36 0.38 16 30 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 1.26 7.71 -51.93 -0.40 0.86 16 34 H 0.41 5.41 7.54 -34.47 -0.26 5.15 16 35 H 0.12 2.40 6.53 -51.93 -0.34 2.06 16 36 H 0.11 1.75 8.09 -51.92 -0.42 1.33 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 40 H 0.09 2.01 7.34 -51.93 -0.38 1.63 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -34.51 337.01 -7.16 -41.67 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.52 Total: 7.97 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 0.76 Total: -30.19 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.72 Total: -42.53 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -2.39 Total: -49.45 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.24 Total: 16.73 kcal Atomic # 16 Polarization: 51.29 SS G_CDS: -0.56 Total: 50.73 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.51 -7.16 -41.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451261679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.816 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds