Wall clock time and date at job start Tue Mar 31 2020 07:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00188 * 2 1 4 4 C 1.52995 * 109.47334 * 59.99301 * 3 2 1 5 5 C 1.52999 * 109.46814 * 299.99409 * 3 2 1 6 6 C 1.52999 * 109.47257 * 179.97438 * 3 2 1 7 7 N 1.46497 * 109.47167 * 64.99621 * 6 3 2 8 8 S 1.65602 * 119.99699 * 165.27707 * 7 6 3 9 9 O 1.42108 * 104.27382 * 180.79762 * 8 7 6 10 10 O 1.42093 * 104.27799 * 308.65309 * 8 7 6 11 11 C 1.81394 * 104.45036 * 64.72636 * 8 7 6 12 12 C 1.52998 * 109.47299 * 173.87111 * 11 8 7 13 13 C 1.50699 * 115.54907 * 65.26885 * 12 11 8 14 14 H 1.07999 * 120.00357 * 268.54409 * 13 12 11 15 15 C 1.37880 * 119.99986 * 88.55068 * 13 12 11 16 16 N 1.31511 * 120.00224 * 174.70141 * 15 13 12 17 17 Si 1.86801 * 120.00053 * 354.69864 * 15 13 12 18 18 H 1.48499 * 109.47053 * 92.55135 * 17 15 13 19 19 H 1.48496 * 109.47263 * 212.55623 * 17 15 13 20 20 H 1.48498 * 109.46965 * 332.55652 * 17 15 13 21 21 C 1.53004 * 117.50138 * 279.60087 * 12 11 8 22 22 C 1.53000 * 117.50175 * 210.93986 * 12 11 8 23 23 H 1.08998 * 109.47448 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47247 * 300.00810 * 1 2 3 25 25 H 1.09010 * 109.47105 * 60.00241 * 1 2 3 26 26 H 1.08998 * 109.47238 * 179.97438 * 4 3 2 27 27 H 1.09003 * 109.47432 * 300.00813 * 4 3 2 28 28 H 1.09005 * 109.46844 * 60.00304 * 4 3 2 29 29 H 1.08996 * 109.47712 * 300.00250 * 5 3 2 30 30 H 1.09004 * 109.46871 * 60.00483 * 5 3 2 31 31 H 1.09001 * 109.47169 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.46558 * 304.99871 * 6 3 2 33 33 H 1.08992 * 109.46928 * 184.99876 * 6 3 2 34 34 H 0.97002 * 120.00318 * 345.00345 * 7 6 3 35 35 H 1.08996 * 109.47300 * 293.87248 * 11 8 7 36 36 H 1.08999 * 109.47414 * 53.87300 * 11 8 7 37 37 H 0.96997 * 120.00232 * 180.02562 * 16 15 13 38 38 H 1.09003 * 117.49542 * 0.02562 * 21 12 11 39 39 H 1.09000 * 117.49964 * 145.01302 * 21 12 11 40 40 H 1.08997 * 117.50053 * 214.97519 * 22 12 11 41 41 H 1.08998 * 117.49690 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5587 2.0648 1.2491 5 6 1.5589 2.0646 -1.2493 6 6 3.5354 1.1846 0.0006 7 7 3.9767 0.5639 -1.2508 8 16 5.5711 0.6339 -1.6926 9 8 5.6187 -0.0422 -2.9416 10 8 5.9022 2.0121 -1.5926 11 6 6.4366 -0.3228 -0.4175 12 6 7.9120 -0.4621 -0.7979 13 6 8.7004 0.8219 -0.8242 14 1 8.7812 1.3873 -1.7409 15 6 9.3187 1.2749 0.3219 16 7 10.0918 2.3378 0.2758 17 14 9.0583 0.3789 1.9401 18 1 10.1302 -0.6322 2.1242 19 1 9.1009 1.3547 3.0587 20 1 7.7368 -0.2981 1.9239 21 6 8.2790 -1.5376 -1.8224 22 6 8.6411 -1.7296 -0.3476 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 2.0024 3.0604 1.2493 27 1 0.4721 2.1508 1.2491 28 1 1.8803 1.5239 2.1392 29 1 1.8805 1.5237 -2.1393 30 1 0.4722 2.1507 -1.2493 31 1 2.0019 3.0605 -1.2492 32 1 3.8507 0.5685 0.8427 33 1 3.9784 2.1765 0.0902 34 1 3.3356 0.1084 -1.8187 35 1 6.3553 0.1912 0.5402 36 1 5.9870 -1.3125 -0.3380 37 1 10.5271 2.6563 1.0820 38 1 7.4692 -2.1456 -2.2258 39 1 9.0909 -1.3165 -2.5153 40 1 9.6911 -1.6348 -0.0708 41 1 8.0698 -2.4641 0.2200 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451261679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:57 Heat of formation + Delta-G solvation = -121.284077 kcal Electronic energy + Delta-G solvation = -22780.522701 eV Core-core repulsion = 19401.718324 eV Total energy + Delta-G solvation = -3378.804376 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16463 -38.84113 -37.96988 -36.81887 -36.10754 -34.28423 -32.91784 -30.08426 -28.46004 -28.05035 -27.58686 -26.14922 -23.34854 -21.41887 -21.03635 -20.20052 -18.61224 -18.51709 -17.80237 -17.11668 -16.91275 -16.85184 -16.17174 -16.03900 -15.56319 -15.37225 -14.81714 -14.66595 -14.56714 -14.11345 -13.98069 -13.75620 -13.22677 -13.20959 -13.05248 -12.95441 -12.88868 -12.83792 -12.66021 -12.38226 -12.30259 -12.23266 -12.04401 -11.76041 -11.67783 -11.47287 -10.96082 -10.72149 -10.56170 -10.48139 -10.08435 -8.31058 -6.44232 -0.55114 1.37036 1.38010 1.51729 2.01659 2.36847 2.79643 2.88162 3.01521 3.16198 3.41653 3.66505 3.79007 3.92478 4.00458 4.18719 4.33899 4.37214 4.44948 4.51700 4.55858 4.60156 4.63000 4.69171 4.73734 4.85543 4.85830 4.93924 4.96338 5.02829 5.07048 5.21724 5.22763 5.36413 5.45224 5.62909 6.15458 6.20986 6.31365 6.67011 7.28367 8.85233 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020281 B = 0.005384 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.257107 B = 5199.549497 C = 5552.364667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.394 6.394 3 C 0.108 3.892 4 C -0.178 4.178 5 C -0.182 4.182 6 C 0.115 3.885 7 N -1.108 6.108 8 S 2.623 3.377 9 O -0.994 6.994 10 O -0.992 6.992 11 C -0.573 4.573 12 C -0.033 4.033 13 C -0.513 4.513 14 H 0.028 0.972 15 C 0.027 3.973 16 N -0.942 5.942 17 Si 0.933 3.067 18 H -0.264 1.264 19 H -0.293 1.293 20 H -0.215 1.215 21 C -0.175 4.175 22 C -0.168 4.168 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.423 0.577 35 H 0.133 0.867 36 H 0.155 0.845 37 H 0.269 0.731 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.463 -6.729 4.546 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.313 6.313 3 C 0.067 3.933 4 C -0.236 4.236 5 C -0.240 4.240 6 C -0.011 4.011 7 N -0.870 5.870 8 S 2.720 3.280 9 O -0.985 6.985 10 O -0.982 6.982 11 C -0.705 4.705 12 C -0.036 4.036 13 C -0.550 4.550 14 H 0.046 0.954 15 C -0.172 4.172 16 N -0.580 5.580 17 Si 0.755 3.245 18 H -0.189 1.189 19 H -0.220 1.220 20 H -0.137 1.137 21 C -0.212 4.212 22 C -0.207 4.207 23 H 0.112 0.888 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.259 0.741 35 H 0.151 0.849 36 H 0.173 0.827 37 H 0.077 0.923 38 H 0.129 0.871 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.804 -6.185 3.971 22.064 hybrid contribution 0.193 0.032 0.701 0.728 sum -20.611 -6.153 4.673 22.011 Atomic orbital electron populations 1.22988 0.80094 1.03630 1.01122 1.87950 1.21096 1.27078 1.95222 1.21613 0.91387 0.84066 0.96192 1.22395 1.03132 1.01217 0.96836 1.22444 1.02740 1.01112 0.97684 1.21598 0.94391 0.99205 0.85879 1.55370 1.26424 1.71664 1.33551 1.04330 0.73255 0.74850 0.75601 1.93470 1.86308 1.77180 1.41520 1.93517 1.83391 1.33945 1.87352 1.30163 1.07053 1.15643 1.17637 1.18796 0.89904 0.90452 1.04424 1.20439 1.32122 1.05702 0.96720 0.95355 1.25942 0.93031 0.95167 1.03105 1.70066 1.31195 1.26295 1.30395 0.85975 0.82278 0.78660 0.77548 1.18921 1.21993 1.13681 1.23101 1.03666 1.02273 0.92136 1.23085 1.00788 0.99239 0.97549 0.88812 0.92572 0.93085 0.90529 0.90081 0.91037 0.92341 0.90117 0.91252 0.89617 0.89472 0.74078 0.84886 0.82684 0.92251 0.87052 0.90185 0.90199 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.21 113.37 1.16 1.38 16 2 O -0.39 -7.59 10.15 -148.98 -1.51 -9.10 16 3 C 0.11 2.06 0.79 -10.80 -0.01 2.05 16 4 C -0.18 -2.59 8.25 71.98 0.59 -2.00 16 5 C -0.18 -3.33 8.03 71.98 0.58 -2.75 16 6 C 0.12 2.78 5.29 86.38 0.46 3.24 16 7 N -1.11 -30.81 5.29 -187.50 -0.99 -31.81 16 8 S 2.62 101.72 5.19 -56.49 -0.29 101.42 16 9 O -0.99 -42.48 18.08 -127.65 -2.31 -44.78 16 10 O -0.99 -48.25 17.18 -127.65 -2.19 -50.44 16 11 C -0.57 -20.80 5.54 71.98 0.40 -20.40 16 12 C -0.03 -1.49 0.79 -52.93 -0.04 -1.53 16 13 C -0.51 -29.58 8.77 25.60 0.22 -29.36 16 14 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 15 C 0.03 1.54 5.47 84.66 0.46 2.00 16 16 N -0.94 -59.57 13.96 21.45 0.30 -59.27 16 17 Si 0.93 42.01 24.96 68.60 1.71 43.73 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.21 -8.16 5.68 99.48 0.57 -7.60 16 21 C -0.17 -6.96 9.96 30.62 0.30 -6.65 16 22 C -0.17 -6.42 7.67 30.62 0.23 -6.19 16 23 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 0.57 6.42 -2.39 -0.02 0.55 16 25 H 0.05 0.57 6.42 -2.38 -0.02 0.56 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 0.90 6.54 -2.39 -0.02 0.89 16 28 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.06 1.18 6.89 -2.39 -0.02 1.16 16 30 H 0.08 1.11 6.54 -2.39 -0.02 1.09 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.09 2.25 7.71 -2.39 -0.02 2.23 16 34 H 0.42 10.35 7.54 -96.74 -0.73 9.62 16 35 H 0.13 4.63 6.53 -2.39 -0.02 4.61 16 36 H 0.16 4.15 8.09 -2.39 -0.02 4.13 16 37 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 39 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.08 3.26 7.34 -2.39 -0.02 3.24 16 41 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -78.81 337.01 -0.77 -79.59 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.15 Total: 30.88 kcal Atomic # 6 Polarization: -64.58 SS G_CDS: 4.36 Total: -60.22 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -0.69 Total: -91.08 kcal Atomic # 8 Polarization: -98.31 SS G_CDS: -6.01 Total: -104.32 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.71 Total: 43.73 kcal Atomic # 16 Polarization: 101.72 SS G_CDS: -0.29 Total: 101.42 kcal Total: -78.81 -0.77 -79.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451261679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.695 kcal (2) G-P(sol) polarization free energy of solvation -78.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds